mRNA_P-wetherbeei_contig57356.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57356.1.1
Unique NamemRNA_P-wetherbeei_contig57356.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57356.1.1 vs. uniprot
Match: A0A6M5YTQ7_9BACT (Peptidase_S9 domain-containing protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YTQ7_9BACT)

HSP 1 Score: 125 bits (315), Expect = 4.630e-32
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 LWGSIGGKTPFDCRVAYVIDPLSQMNAFPDWVLFTRDVLDKDFEGVHGAGWFDRGGRIDDRHSAWR 201
            LWGSIGGKT FDCRVAY IDP+SQM AFPDWVL TR+VLDKDFEGVHGAGWF+R G+IDD+ SAWR
Sbjct:  727 LWGSIGGKTLFDCRVAYGIDPMSQMYAFPDWVLLTREVLDKDFEGVHGAGWFNRDGKIDDQRSAWR 792
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BLAST of mRNA_P-wetherbeei_contig57356.1.1 vs. uniprot
Match: A0A521KYK0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KYK0_9BACT)

HSP 1 Score: 46.6 bits (109), Expect = 2.900e-5
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   43 RVAYVIDPLSQMNAFPDWVLFTRDVLDKDFEGVHGAGWFDRGGRIDDRHSAWR 201
            R+ Y + P +    +PD+V+F+ DVL K   GV  AGWFDR  ++  R  A+R
Sbjct:    5 RLGYTLQPFTSGVGYPDYVIFSTDVLTKGDGGVLEAGWFDRDWKVQ-REGAFR 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6M5YTQ7_9BACT4.630e-3283.33Peptidase_S9 domain-containing protein n=1 Tax=Fri... [more]
A0A521KYK0_9BACT2.900e-541.51Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57356contigP-wetherbeei_contig57356:206..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.875044-CDS-P-wetherbeei_contig57356:205..4091683186850.875044-CDS-P-wetherbeei_contig57356:205..409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57356 206..409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57356.1.1prot_P-wetherbeei_contig57356.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57356 206..409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57356.1.1

>prot_P-wetherbeei_contig57356.1.1 ID=prot_P-wetherbeei_contig57356.1.1|Name=mRNA_P-wetherbeei_contig57356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
SLWGSIGGKTPFDCRVAYVIDPLSQMNAFPDWVLFTRDVLDKDFEGVHGA
GWFDRGGRIDDRHSAWR*
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mRNA from alignment at P-wetherbeei_contig57356:206..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57356.1.1 ID=mRNA_P-wetherbeei_contig57356.1.1|Name=mRNA_P-wetherbeei_contig57356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig57356:206..409+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTTTGGGGATCGATCGGTGGGAAAACGCCGTTCGACTGCCGCGTCGC
TTACGTAATCGATCCCCTGTCACAGATGAACGCGTTCCCGGACTGGGTAC
TCTTCACCCGTGACGTTCTCGACAAGGACTTCGAGGGCGTCCACGGTGCC
GGCTGGTTCGATCGCGGCGGAAGAATTGACGACCGGCATTCCGCTTGGCG
CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57356:206..409+

>mRNA_P-wetherbeei_contig57356.1.1 ID=mRNA_P-wetherbeei_contig57356.1.1|Name=mRNA_P-wetherbeei_contig57356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig57356:206..409+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTTTGGGGATCGATCGGTGGGAAAACGCCGTTCGACTGCCGCGTCGC
TTACGTAATCGATCCCCTGTCACAGATGAACGCGTTCCCGGACTGGGTAC
TCTTCACCCGTGACGTTCTCGACAAGGACTTCGAGGGCGTCCACGGTGCC
GGCTGGTTCGATCGCGGCGGAAGAATTGACGACCGGCATTCCGCTTGGCG
CTGA
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