mRNA_P-wetherbeei_contig57347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57347.1.1
Unique NamemRNA_P-wetherbeei_contig57347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A1H1MRH2_9BACT (FecR family protein n=1 Tax=Opitutus sp. GAS368 TaxID=1882749 RepID=A0A1H1MRH2_9BACT)

HSP 1 Score: 155 bits (393), Expect = 2.030e-43
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTKDVPP-RIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNR----VKLVLADPSRGQIPIVASIRSDNIEGFV 510
            IEV FT  ERRV L  GEA F VAK+  RPFIV ANG  VRAVGTAF+V  D  ++E+LVTEG V V  P+ +          P++ AG+R V+S     PP R+   S +++A+  AWQPQLLDFSS  L K + EFN+R      ++LV+ADP    +PIVASIRSDNIEGFV
Sbjct:  146 IEVEFTPAERRVHLVRGEAHFAVAKNPLRPFIVRANGVDVRAVGTAFDVRLDPESVEVLVTEGHVQVQLPAASV---------PVLAAGQRTVISFAPAAPPPRVLDVSPEEMAQRLAWQPQLLDFSSTALAKVVAEFNRRTGATQGIRLVIADPELESLPIVASIRSDNIEGFV 311          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A8F9TZN0_9BACT (FecR domain-containing protein n=1 Tax=Oleiharenicola sp. KSB-15 TaxID=2862869 RepID=A0A8F9TZN0_9BACT)

HSP 1 Score: 146 bits (369), Expect = 7.600e-40
Identity = 81/170 (47.65%), Postives = 110/170 (64.71%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTKDVPPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            IE ++T  ER + L  GEAFF VAK+  RPFIV ANG  V+AVGTAFNV    GA+++LVTEG+V +A      G         LV AGE  +V +    P  +  ASA ++++  AWQPQ+LDFSS  L   + EFN+ NRV++V+ADP+   + IV ++RSDN++GFV
Sbjct:  148 IEAHYTPGEREISLVRGEAFFKVAKNPLRPFIVRANGIAVQAVGTAFNVRLVDGAVDVLVTEGRVKIA-----NGDASDQNPPLLVAAGEHTLVPVRGHGPVAVAKASATEISQALAWQPQMLDFSSTPLGDMVAEFNRHNRVQIVIADPTLAHLAIVGAVRSDNVDGFV 312          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A2A2QIL3_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium Tous-C5TDCM TaxID=1982322 RepID=A0A2A2QIL3_9BACT)

HSP 1 Score: 144 bits (364), Expect = 8.160e-39
Identity = 84/177 (47.46%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTKDVPPRIEPAS-------ADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            + V +T  ERRV L  GEA FTVAK+  RPFIVSA G + RA+GTAFNV    G++E+LVTEG+V VAP S       T    P++  GE+  V L  D      PA+       A+++AR  AWQP+LL FSS  L + + EFN+ N ++L LADP+    P+  S RSDN EGFV
Sbjct:  171 VVVEYTAAERRVRLLTGEAHFTVAKNPSRPFIVSAAGVETRAIGTAFNVRLASGSVEVLVTEGRVQVAPSS------PTPAPLPMLGVGEKLTVPLENDPNLNSSPAALVPVAVGAEEIARALAWQPRLLQFSSAPLAEVVAEFNRYNTLQLALADPALAAFPVTTSFRSDNAEGFV 341          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A2A2QLZ5_9BACT (FecR domain-containing protein n=1 Tax=Opitutae bacterium Tous-C5TDCM TaxID=1982322 RepID=A0A2A2QLZ5_9BACT)

HSP 1 Score: 142 bits (359), Expect = 2.590e-38
Identity = 83/171 (48.54%), Postives = 111/171 (64.91%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTK-DVPPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            +E  ++  ERRV L  GEA FTVAKD  RPF+VSA G  VRAVGT FNV  +  A+E++V+EG+V V  P+ A        A+ L V G+  VV+LT    PP+I   SAD++A   AWQP+LLDF+   L + + EFN+RN V+L + DP  G + + A+ RSDN+EGFV
Sbjct:  155 VEAIYSATERRVRLVRGEANFTVAKDAVRPFVVSAGGVDVRAVGTVFNVRLEPAAVEVVVSEGRVNVDAPARA--------ATSLAV-GQSTVVALTAAGAPPQIATLSADEIAARLAWQPRLLDFTDAALTEIVAEFNRRNPVQLSVVDPVLGAVRLSATFRSDNVEGFV 316          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: UPI0019B363BA (FecR domain-containing protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019B363BA)

HSP 1 Score: 141 bits (355), Expect = 1.420e-37
Identity = 84/180 (46.67%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAG----------ERAVVSLTKDVPPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            +   +T  ERRV L  GEA FTV K+  RPFIVSANG  V AVGTAFNV  D  A+E+LVTEG+V V  P  A G     VA    +AG          +RAVVSL    PP+IE  +  Q+ R+ AWQ ++LDF    L + + EFN+ N V+++L D    Q+ I AS RS+N++GFV
Sbjct:  155 VSARYTAGERRVRLERGEAHFTVTKNPTRPFIVSANGVDVFAVGTAFNVKIDVTAVEVLVTEGRVQVTAP--APGAASRAVAGGAPLAGARMVSALDLRQRAVVSLEHISPPQIEALTPAQIDRVLAWQRRILDFDKAPLAEIVAEFNRHNEVQMLLVDQELAQVLISASFRSNNVDGFV 332          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A2A2Q7B7_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium Tous-C1TDCM TaxID=1982319 RepID=A0A2A2Q7B7_9BACT)

HSP 1 Score: 140 bits (354), Expect = 1.560e-37
Identity = 84/170 (49.41%), Postives = 111/170 (65.29%), Query Frame = 1
Query:   10 NFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAV--APPSGATGKTETTVASPLVVAGERAVVSLTKDVPP-RIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            +FT  ERRV L  GEA FTV K+  RPF+V+A G  VRAVGTAFNV   R A+E+LVTEG+V V    P     + +  V  P++ AGERAVVSL       RI   +A ++ R+ AWQ +LL+F++V L + + EFN+RN ++LV+ADP    + I  S RSDN+EGFV
Sbjct:  152 HFTPAERRVRLTAGEAHFTVTKNPARPFVVAAQGMDVRAVGTAFNVRLGRAAVEVLVTEGRVRVDDVRPGPVAPEAKPAVV-PVLEAGERAVVSLAPQPEXVRIAVLTAGEIERVLAWQHRLLEFNAVPLVEVVAEFNRRNALQLVVADPELAAVRITTSFRSDNVEGFV 320          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: UPI0019929C66 (FecR domain-containing protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019929C66)

HSP 1 Score: 139 bits (350), Expect = 5.140e-37
Identity = 84/172 (48.84%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAP-PSGATGKTETTVASPLVVAGERAVVSLTKDVP-PRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            I V+FT+ ERRV L  GEA FTV  D  RPF+V A G  VRAVGTAF V  + G++ +LVTEGKV +      A G        PL+ +G+RAVVSL    P P I P +AD++A   AW+P++LDF+  TL +   EFN+ N V+L + DPS     + A+IRSDN+EGFV
Sbjct:  147 ITVSFTLAERRVRLERGEAHFTVTHDPSRPFVVEAGGVAVRAVGTAFCVTRETGSVAVLVTEGKVRLTSLDKPALGD------DPLLNSGQRAVVSLAPGGPAPTIAPVTADEIAERLAWKPRVLDFAEATLAEIATEFNRCNPVRLEITDPSLRARRLSATIRSDNVEGFV 312          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A2G4HFF9_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4HFF9_9BACT)

HSP 1 Score: 139 bits (350), Expect = 9.330e-37
Identity = 80/177 (45.20%), Postives = 109/177 (61.58%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTKD-----VPPRIEPASA--DQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            + V +T  ERRV+L  GEA FTVAK+  RPFIVSA G + RA+GTAFNV    G++E+LVTEG+V VAP + +          P++  GE+  V L  +      P  + P +   +++AR  AWQP+LL FSS  L + + EFN+ N ++L LADP+    P+  S RSDN EGFV
Sbjct:  170 VVVAYTAAERRVLLLTGEARFTVAKNPTRPFIVSAAGVETRAIGTAFNVRLAAGSVEVLVTEGRVQVAPAAPSPAPL------PMLCVGEKLTVPLENNRGRNSAPAALVPVAVGVEEIARALAWQPRLLQFSSAPLAEVVAEFNRHNTLQLALADPALAAFPVTTSFRSDNAEGFV 340          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: UPI0019C63C2A (FecR domain-containing protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019C63C2A)

HSP 1 Score: 137 bits (345), Expect = 2.830e-36
Identity = 82/176 (46.59%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    1 IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVA----VAPPSGATGKTETTVASPL-VVAGERAVVSLTKDV-PPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGFV 510
            IE  FT + RRV L  GEA FTV K+  RPFIV A G  VRAVGTAF+V    GA+E+LVTEGKV     V PP+   G       +P  +VAGERAV+ +   V PP + PASA ++A++ AWQ   L+F  + L + + EFN RN ++LV+ + S G++ +    R+DN+E FV
Sbjct:  137 IETAFTADTRRVRLVRGEAHFTVTKNLARPFIVDAGGVSVRAVGTAFDVRRASGAVEVLVTEGKVQIERPVIPPAAPVGLLAMHAPAPTPLVAGERAVIDIRNAVAPPLVTPASAGEIAQLLAWQGVRLEFVDLPLAEVVIEFNLRNSLQLVVGNVSTGRLRVAGKFRADNVEAFV 312          
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Match: A0A2A2Q9T7_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium Tous-C1TDCM TaxID=1982319 RepID=A0A2A2Q9T7_9BACT)

HSP 1 Score: 135 bits (341), Expect = 1.630e-35
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 1
Query:    7 VNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVMFDRGALEILVTEGKVAV---APPSGATGKTETTVASPLVVA----GERAVVSLTKD-----VPPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADPSRGQIPIVASIRSDNIEGF 507
            V F+ +ERRV+L  GEA FTVAK+  RPF+V A G  VRA+GTAFNV     +LE+LVTEG V V   A    A       + +P V+A    G R V+++  +     V   +   SA+++A++  W+P+LLDF +V L   +  FN+ NR +L + DPS   +PIVASIRSDN+EGF
Sbjct:  152 VQFSPHERRVLLVQGEAQFTVAKNPARPFVVRAGGVDVRAIGTAFNVKLAGPSLEVLVTEGTVHVERRAAAPAANSAASAVMPAPAVLAALTAGHRTVIAVASESGATEVSATVRTVSAEEIAQVLDWKPRLLDFEAVPLADVVATFNRLNRTQLAVGDPSLAGLPIVASIRSDNVEGF 330          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H1MRH2_9BACT2.030e-4352.57FecR family protein n=1 Tax=Opitutus sp. GAS368 Ta... [more]
A0A8F9TZN0_9BACT7.600e-4047.65FecR domain-containing protein n=1 Tax=Oleiharenic... [more]
A0A2A2QIL3_9BACT8.160e-3947.46Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
A0A2A2QLZ5_9BACT2.590e-3848.54FecR domain-containing protein n=1 Tax=Opitutae ba... [more]
UPI0019B363BA1.420e-3746.67FecR domain-containing protein n=1 Tax=Undibacteri... [more]
A0A2A2Q7B7_9BACT1.560e-3749.41Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
UPI0019929C665.140e-3748.84FecR domain-containing protein n=1 Tax=Undibacteri... [more]
A0A2G4HFF9_9BACT9.330e-3745.20Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
UPI0019C63C2A2.830e-3646.59FecR domain-containing protein n=1 Tax=Undibacteri... [more]
A0A2A2Q9T7_9BACT1.630e-3544.69Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57347contigP-wetherbeei_contig57347:1..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog452637.Oter_3504
PFAMsDUF4880,DUF4974,FecR
Model size510
Max annot lvl414999|Opitutae
KEGG koko:K07165
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.63e-31
EggNOG OGsCOG3712@1|root,COG3712@2|Bacteria,46VY1@74201|Verrucomicrobia,3K8T5@414999|Opitutae
DescriptionAnti-FecI sigma factor, FecR
Cds size510
COG categoryPT
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.7574172-CDS-P-wetherbeei_contig57347:0..5101683186850.7574172-CDS-P-wetherbeei_contig57347:0..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57347 1..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57347.1.1prot_P-wetherbeei_contig57347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57347 1..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57347.1.1

>prot_P-wetherbeei_contig57347.1.1 ID=prot_P-wetherbeei_contig57347.1.1|Name=mRNA_P-wetherbeei_contig57347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
IEVNFTINERRVVLRHGEAFFTVAKDTQRPFIVSANGAQVRAVGTAFNVM
FDRGALEILVTEGKVAVAPPSGATGKTETTVASPLVVAGERAVVSLTKDV
PPRIEPASADQLARIRAWQPQLLDFSSVTLEKAIDEFNQRNRVKLVLADP
SRGQIPIVASIRSDNIEGFV
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mRNA from alignment at P-wetherbeei_contig57347:1..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57347.1.1 ID=mRNA_P-wetherbeei_contig57347.1.1|Name=mRNA_P-wetherbeei_contig57347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57347:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGGTCAACTTCACCATCAATGAAAGGCGTGTCGTGCTTCGTCACGG CGAAGCGTTCTTCACCGTGGCCAAGGATACGCAGCGTCCGTTTATCGTGA GTGCCAACGGGGCCCAGGTCCGGGCCGTTGGCACGGCATTCAATGTCATG TTTGACCGCGGGGCCCTGGAAATCCTCGTCACGGAGGGCAAGGTCGCGGT GGCCCCGCCGTCGGGCGCGACCGGGAAGACCGAGACGACGGTCGCATCCC CTCTGGTCGTGGCGGGCGAGCGGGCGGTGGTTTCGCTGACCAAAGACGTG CCGCCCCGGATTGAACCCGCCAGTGCGGATCAACTGGCGAGGATTCGGGC CTGGCAGCCTCAGTTGCTGGATTTTTCATCTGTTACGCTGGAGAAGGCCA TCGACGAGTTCAACCAGCGCAACCGGGTGAAGCTCGTGCTGGCGGATCCT TCCCGTGGCCAGATTCCCATCGTGGCTTCGATCCGTTCGGACAACATCGA GGGCTTCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57347:1..510+

>mRNA_P-wetherbeei_contig57347.1.1 ID=mRNA_P-wetherbeei_contig57347.1.1|Name=mRNA_P-wetherbeei_contig57347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57347:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGGTCAACTTCACCATCAATGAAAGGCGTGTCGTGCTTCGTCACGG
CGAAGCGTTCTTCACCGTGGCCAAGGATACGCAGCGTCCGTTTATCGTGA
GTGCCAACGGGGCCCAGGTCCGGGCCGTTGGCACGGCATTCAATGTCATG
TTTGACCGCGGGGCCCTGGAAATCCTCGTCACGGAGGGCAAGGTCGCGGT
GGCCCCGCCGTCGGGCGCGACCGGGAAGACCGAGACGACGGTCGCATCCC
CTCTGGTCGTGGCGGGCGAGCGGGCGGTGGTTTCGCTGACCAAAGACGTG
CCGCCCCGGATTGAACCCGCCAGTGCGGATCAACTGGCGAGGATTCGGGC
CTGGCAGCCTCAGTTGCTGGATTTTTCATCTGTTACGCTGGAGAAGGCCA
TCGACGAGTTCAACCAGCGCAACCGGGTGAAGCTCGTGCTGGCGGATCCT
TCCCGTGGCCAGATTCCCATCGTGGCTTCGATCCGTTCGGACAACATCGA
GGGCTTCGTG
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