mRNA_P-wetherbeei_contig57342.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57342.1.1
Unique NamemRNA_P-wetherbeei_contig57342.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI001C3E0F44 (C40 family peptidase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E0F44)

HSP 1 Score: 89.7 bits (221), Expect = 1.510e-19
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 DAIAAAAHNLASTTYLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGGDP 183
            DAI AAA NLA   Y GDGR TI AIQQRWAPN A+NDPT LN +W RNV  YY ELGGDP
Sbjct:  231 DAIRAAARNLAGELYAGDGRDTIVAIQQRWAPNHAANDPTGLNSHWTRNVSHYYAELGGDP 291          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI001C3E1600 (C40 family peptidase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E1600)

HSP 1 Score: 87.8 bits (216), Expect = 7.550e-19
Identity = 42/61 (68.85%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 DAIAAAAHNLASTTYLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGGDP 183
            D I AAA NL    Y G G TTI AIQ RWAP+GA NDPT LN NW RNV TYY ELGGDP
Sbjct:  235 DGIGAAARNLGGNLYAGSGLTTIPAIQGRWAPSGADNDPTGLNNNWVRNVSTYYAELGGDP 295          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI0019A0A939 (Uncharacterized protein n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=UPI0019A0A939)

HSP 1 Score: 68.2 bits (165), Expect = 5.490e-12
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 DAIAAAAHNLASTTYLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGGDP 183
            DAI   A  L  T YLG+GRTT+  +QQ+WAP+ A+NDPT LN  W  NV  +  E GGDP
Sbjct:  119 DAINTIAEGL-RTNYLGEGRTTVALVQQKWAPSNAANDPTGLNNYWVANVTKFLVEQGGDP 178          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI00198E1B76 (Uncharacterized protein n=1 Tax=Paenibacillus silvae TaxID=1325358 RepID=UPI00198E1B76)

HSP 1 Score: 55.1 bits (131), Expect = 2.160e-8
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGG 177
            Y   G TTI  IQ+++AP GASNDPT LN NW   V  YY  LGG
Sbjct:   48 YFDQGLTTIEQIQKKYAPVGASNDPTGLNKNWVNGVTKYYKSLGG 92          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI0009D63D61 (glucosaminidase domain-containing protein n=1 Tax=Paenibacillus odorifer TaxID=189426 RepID=UPI0009D63D61)

HSP 1 Score: 56.2 bits (134), Expect = 2.220e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGGD 180
            YL  G TTI AIQ+++APNGA+NDPT LN  W   V  YY   GG+
Sbjct:   98 YLDKGLTTIEAIQKKYAPNGAANDPTGLNSYWVSGVKKYYKMFGGE 143          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI00058BC492 (glucosaminidase domain-containing protein n=2 Tax=Bacillales TaxID=1385 RepID=UPI00058BC492)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-8
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 DAIAAAAHNLASTTYLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGGDPL 186
            D+I+  A NL S  YLG G  TIG I  ++AP GASNDPT LN +W   V  YY +L  + L
Sbjct:  172 DSISDMARNL-SKNYLGKGLATIGEIGNKYAPIGASNDPTGLNNHWVTGVTKYYQQLQSNTL 232          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: A0A1V4FUG4_9FLAO (LYZ2 domain-containing protein n=1 Tax=Chryseobacterium mucoviscidosis TaxID=1945581 RepID=A0A1V4FUG4_9FLAO)

HSP 1 Score: 54.7 bits (130), Expect = 1.040e-7
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGG 177
            Y+  G TTI  IQ+++AP GASNDPT LN NW   V  YY   GG
Sbjct:  109 YIDKGLTTIQQIQKKYAPVGASNDPTGLNNNWVNGVSKYYKMFGG 153          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI0009D675CE (glucosaminidase domain-containing protein n=2 Tax=Paenibacillus odorifer TaxID=189426 RepID=UPI0009D675CE)

HSP 1 Score: 54.3 bits (129), Expect = 1.560e-7
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGG 177
            Y   G T+I AIQ+++AP GASNDPT+LN NW   V  YY   GG
Sbjct:  113 YFDKGLTSIEAIQKKYAPVGASNDPTNLNSNWVNGVKKYYKMFGG 157          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI0009E7A7F6 (glucosaminidase domain-containing protein n=1 Tax=Paenibacillus riograndensis TaxID=483937 RepID=UPI0009E7A7F6)

HSP 1 Score: 53.9 bits (128), Expect = 1.710e-7
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGG 177
            Y+  G TTI  IQ+++APNGA+NDPT+LN  W   V  YY   GG
Sbjct:   97 YIDKGLTTIEQIQKKYAPNGAANDPTNLNSYWTSGVTKYYNMFGG 141          
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Match: UPI00069C2306 (glucosaminidase domain-containing protein n=1 Tax=Paenibacillus sp. DMB20 TaxID=1642570 RepID=UPI00069C2306)

HSP 1 Score: 52.8 bits (125), Expect = 3.630e-7
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   43 YLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNVGTYYTELGG 177
            Y   G TTI  IQ+++AP GASNDPT LN +W   V  YY  LGG
Sbjct:   82 YFDQGLTTIPQIQKKYAPVGASNDPTGLNNHWVSGVTRYYRMLGG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
UPI001C3E0F441.510e-1972.13C40 family peptidase n=1 Tax=Miltoncostaea marina ... [more]
UPI001C3E16007.550e-1968.85C40 family peptidase n=1 Tax=Miltoncostaea oceani ... [more]
UPI0019A0A9395.490e-1254.10Uncharacterized protein n=1 Tax=Thermoleophilia ba... [more]
UPI00198E1B762.160e-857.78Uncharacterized protein n=1 Tax=Paenibacillus silv... [more]
UPI0009D63D612.220e-856.52glucosaminidase domain-containing protein n=1 Tax=... [more]
UPI00058BC4927.170e-850.00glucosaminidase domain-containing protein n=2 Tax=... [more]
A0A1V4FUG4_9FLAO1.040e-755.56LYZ2 domain-containing protein n=1 Tax=Chryseobact... [more]
UPI0009D675CE1.560e-755.56glucosaminidase domain-containing protein n=2 Tax=... [more]
UPI0009E7A7F61.710e-753.33glucosaminidase domain-containing protein n=1 Tax=... [more]
UPI00069C23063.630e-755.56glucosaminidase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57342contigP-wetherbeei_contig57342:12..197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1461580.CCAS010000009_gene1313
PFAMsGlucosaminidase
Model size186
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-08
EggNOG OGsCOG4193@1|root,COG4193@2|Bacteria,1TSZR@1239|Firmicutes,4HDB1@91061|Bacilli,1ZG06@1386|Bacillus
DescriptionMannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
Cds size186
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.6891553-CDS-P-wetherbeei_contig57342:11..1971683186850.6891553-CDS-P-wetherbeei_contig57342:11..197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57342 12..197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57342.1.1prot_P-wetherbeei_contig57342.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57342 12..197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57342.1.1

>prot_P-wetherbeei_contig57342.1.1 ID=prot_P-wetherbeei_contig57342.1.1|Name=mRNA_P-wetherbeei_contig57342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
DAIAAAAHNLASTTYLGDGRTTIGAIQQRWAPNGASNDPTDLNGNWARNV
GTYYTELGGDPL
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mRNA from alignment at P-wetherbeei_contig57342:12..197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57342.1.1 ID=mRNA_P-wetherbeei_contig57342.1.1|Name=mRNA_P-wetherbeei_contig57342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig57342:12..197+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCATCGCGGCCGCGGCCCACAACCTCGCCAGCACCACCTACCTGGG CGACGGGCGGACCACGATCGGGGCGATCCAGCAGCGCTGGGCGCCGAACG GCGCCTCCAACGATCCGACCGATCTCAACGGCAACTGGGCTCGCAACGTC GGCACCTACTACACCGAGCTCGGGGGCGACCCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57342:12..197+

>mRNA_P-wetherbeei_contig57342.1.1 ID=mRNA_P-wetherbeei_contig57342.1.1|Name=mRNA_P-wetherbeei_contig57342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig57342:12..197+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCATCGCGGCCGCGGCCCACAACCTCGCCAGCACCACCTACCTGGG
CGACGGGCGGACCACGATCGGGGCGATCCAGCAGCGCTGGGCGCCGAACG
GCGCCTCCAACGATCCGACCGATCTCAACGGCAACTGGGCTCGCAACGTC
GGCACCTACTACACCGAGCTCGGGGGCGACCCGCTG
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