mRNA_P-wetherbeei_contig5732.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5732.2.1
Unique NamemRNA_P-wetherbeei_contig5732.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A482SPW6_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPW6_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 3.470e-21
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            P +++ FSQARNGR+KR+EE+LNLG P+D+ DE G TLL VA Q  ++ LAEML+ RGA  N QN +GN  L
Sbjct:    4 PSLDTVFSQARNGRIKRVEESLNLGFPIDAEDEKGTTLLLVAAQNSNKRLAEMLILRGASINHQNSQGNTAL 75          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S2RQ58_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ58_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.780e-21
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            P++E+ FSQARNGRVKRLEE+LN   PVD+ DE GNTLL +  Q C++ L E+++ RGA+ N QN  GN  L
Sbjct:   23 PDMETVFSQARNGRVKRLEESLNADFPVDTLDEKGNTLLLIGAQNCNKKLMELVIHRGANINHQNASGNTAL 94          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S3MBB9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBB9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.930e-20
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            P +++ FSQARNGR+KR+EE+LN G P+D  DE GNTLL VACQ  +R L EMLL RGA  N QN +GN  L
Sbjct: 2014 PSLDTVFSQARNGRIKRVEESLNAGFPIDGEDEKGNTLLLVACQNSNRRLVEMLLVRGAAINHQNAQGNTAL 2085          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S1UK14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK14_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-19
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   16 AGEAAAGTAPLPPEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            AG+AA G     P++++ FSQARNGR+KR+EE+LNLG P+D+ D  GNTLL VA QQ ++ L  +L+ RGAD N QN  GN  L
Sbjct:  104 AGQAAPGEGV--PKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTAL 185          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A6U3RLV7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RLV7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-18
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            PE+++ FSQARNGR KR+E++LN   PVD+ DE GNTLL +A Q C+++L ++L+ RGA+ N QN +GN PL
Sbjct: 1090 PELDTVFSQARNGRTKRVEDSLNADFPVDAEDEKGNTLLHLASQNCNKALMQLLIARGANVNSQNGQGNTPL 1161          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S1Y181_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y181_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.920e-18
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   16 AGEAAAGTAPLPPEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            AG+AA G     P++++ FSQARNGR+KR+EE+LNLG P+D+ D  GNTLL VA QQ ++ L  +L+ RGAD N QN  GN  L
Sbjct:  493 AGQAAPGEGV--PKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTAL 574          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S3XZ48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ48_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 3.430e-18
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   16 AGEAAAGTAPLPPEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            AG A A +A    ++E  FS AR+ RV  LE  L+ G+PV+  D++GNT+L VACQ  H+  A+  LRRGAD N +NY+GN PL
Sbjct:    2 AGAAGALSAAEAKDLEDVFSYARHNRVDDLERLLDAGMPVNIRDQYGNTVLCVACQNGHKRAAKAALRRGADINARNYRGNTPL 85          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A835Z1X4_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.260e-17
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADP--NRQNYKGNAPL 267
            PE++  FSQARNGRV+R+EE+LNLG P+D+ D+ GNTLL  ACQQ +  L EMLLRRGA    N +N  GN  L
Sbjct:  658 PELDVVFSQARNGRVRRVEESLNLGFPLDAVDDRGNTLLITACQQSNLPLIEMLLRRGARATVNHRNAHGNTCL 731          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A7S2FRG1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRG1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.270e-17
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   52 PEIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            P++E+ FSQARN R++RLE++LN   PVDS D+ GNTLL +  Q C+R L E++L RG++ N QN  GN+ L
Sbjct:  242 PDLETVFSQARNSRLRRLEDSLNADFPVDSQDDKGNTLLLIGAQNCNRKLMELVLARGSNINHQNAHGNSAL 313          
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Match: A0A2P4WW78_9STRA (SAM domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WW78_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.090e-17
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   55 EIESAFSQARNGRVKRLEETLNLGLPVDSTDEWGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL 267
            E+++ FSQARNGR+KRL E+L+ G P+DS D+ GNTLL +ACQ  ++ + E+L+ R A+ N +N +GN PL
Sbjct:  517 EVDTVFSQARNGRMKRLVESLDAGFPIDSEDDKGNTLLLLACQNVNQKMVELLVTRRANVNHRNAQGNTPL 587          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5732.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SPW6_9ARCH3.470e-2158.33Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A7S2RQ58_9STRA5.780e-2156.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3MBB9_9STRA8.930e-2061.11Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UK14_9STRA1.350e-1954.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U3RLV7_9STRA1.060e-1855.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Y181_9STRA1.920e-1854.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XZ48_HETAK3.430e-1850.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z1X4_9STRA1.260e-1759.46SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2FRG1_9STRA2.270e-1752.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2P4WW78_9STRA8.090e-1752.11SAM domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5732contigP-wetherbeei_contig5732:1248..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo136471
PFAMsAnk_2,SAM_1
Model size267
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.38e-17
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota,3QB3D@4776|Peronosporales
DescriptionSterile alpha motif.
Cds size267
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.4661222-CDS-P-wetherbeei_contig5732:1247..15141683186850.4661222-CDS-P-wetherbeei_contig5732:1247..1514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5732 1248..1514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5732.2.1prot_P-wetherbeei_contig5732.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5732 1248..1514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5732.2.1

>prot_P-wetherbeei_contig5732.2.1 ID=prot_P-wetherbeei_contig5732.2.1|Name=mRNA_P-wetherbeei_contig5732.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
GKNATAGEAAAGTAPLPPEIESAFSQARNGRVKRLEETLNLGLPVDSTDE
WGNTLLAVACQQCHRSLAEMLLRRGADPNRQNYKGNAPL
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mRNA from alignment at P-wetherbeei_contig5732:1248..1514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5732.2.1 ID=mRNA_P-wetherbeei_contig5732.2.1|Name=mRNA_P-wetherbeei_contig5732.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig5732:1248..1514+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAAAAACGCCACGGCCGGGGAGGCCGCCGCCGGGACCGCGCCGCTGCC GCCCGAGATCGAGTCGGCCTTCAGCCAGGCACGCAACGGACGCGTGAAGC GGCTGGAGGAGACGCTCAACCTGGGGTTGCCCGTTGACTCGACGGACGAG TGGGGCAACACGCTGCTGGCGGTGGCGTGCCAGCAGTGCCACCGCTCCCT GGCGGAGATGCTGCTGCGGCGCGGCGCCGACCCCAACCGCCAGAACTACA AGGGTAACGCCCCATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5732:1248..1514+

>mRNA_P-wetherbeei_contig5732.2.1 ID=mRNA_P-wetherbeei_contig5732.2.1|Name=mRNA_P-wetherbeei_contig5732.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig5732:1248..1514+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAAAAACGCCACGGCCGGGGAGGCCGCCGCCGGGACCGCGCCGCTGCC
GCCCGAGATCGAGTCGGCCTTCAGCCAGGCACGCAACGGACGCGTGAAGC
GGCTGGAGGAGACGCTCAACCTGGGGTTGCCCGTTGACTCGACGGACGAG
TGGGGCAACACGCTGCTGGCGGTGGCGTGCCAGCAGTGCCACCGCTCCCT
GGCGGAGATGCTGCTGCGGCGCGGCGCCGACCCCAACCGCCAGAACTACA
AGGGTAACGCCCCATTG
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