mRNA_P-wetherbeei_contig57313.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57313.1.1
Unique NamemRNA_P-wetherbeei_contig57313.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57313contigP-wetherbeei_contig57313:77..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size423
Hectar predicted targeting categorysignal peptide
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.3874722-UTR-P-wetherbeei_contig57313:76..971683186850.3874722-UTR-P-wetherbeei_contig57313:76..97Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57313 77..97 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.3980978-CDS-P-wetherbeei_contig57313:97..4991683186850.3980978-CDS-P-wetherbeei_contig57313:97..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57313 98..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57313.1.1prot_P-wetherbeei_contig57313.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57313 98..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57313.1.1

>prot_P-wetherbeei_contig57313.1.1 ID=prot_P-wetherbeei_contig57313.1.1|Name=mRNA_P-wetherbeei_contig57313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MTSVFAAAVLSPAIVFAGVVLIKLIDFWGQLSSRYLYEHQKITNVLIVVA
LGIAIARAVSRHPPKWTGGLQVWWAVLWLWVYGAFSLTWSRAPLAGTEQW
SLYLPYMVITLAIPLVFTRTEDFKKALLATIGLG
back to top

mRNA from alignment at P-wetherbeei_contig57313:77..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57313.1.1 ID=mRNA_P-wetherbeei_contig57313.1.1|Name=mRNA_P-wetherbeei_contig57313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig57313:77..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTTATCGTATTTATTGATAATGACTTCAGTGTTCGCTGCTGCCGTGCT
TTCACCAGCAATCGTGTTCGCAGGAGTGGTATTAATTAAGTTAATTGATT
TTTGGGGGCAACTCTCAAGTCGTTACTTGTACGAGCATCAGAAGATTACC
AATGTATTGATTGTCGTAGCTCTAGGAATTGCGATAGCTCGGGCGGTTAG
TCGTCATCCGCCAAAATGGACTGGTGGGTTACAAGTCTGGTGGGCCGTCC
TCTGGCTTTGGGTCTATGGTGCATTTTCGCTTACTTGGAGCCGCGCGCCT
TTGGCCGGTACAGAGCAATGGAGCCTGTACTTGCCATACATGGTGATAAC
TCTTGCGATCCCACTTGTGTTTACGCGAACGGAGGATTTTAAGAAAGCCC
TCTTGGCTACAATAGGTCTCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57313:77..499+

>mRNA_P-wetherbeei_contig57313.1.1 ID=mRNA_P-wetherbeei_contig57313.1.1|Name=mRNA_P-wetherbeei_contig57313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57313:77..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTCAGTGTTCGCTGCTGCCGTGCTTTCACCAGCAATCGTGTTCGC
AGGAGTGGTATTAATTAAGTTAATTGATTTTTGGGGGCAACTCTCAAGTC
GTTACTTGTACGAGCATCAGAAGATTACCAATGTATTGATTGTCGTAGCT
CTAGGAATTGCGATAGCTCGGGCGGTTAGTCGTCATCCGCCAAAATGGAC
TGGTGGGTTACAAGTCTGGTGGGCCGTCCTCTGGCTTTGGGTCTATGGTG
CATTTTCGCTTACTTGGAGCCGCGCGCCTTTGGCCGGTACAGAGCAATGG
AGCCTGTACTTGCCATACATGGTGATAACTCTTGCGATCCCACTTGTGTT
TACGCGAACGGAGGATTTTAAGAAAGCCCTCTTGGCTACAATAGGTCTCG
GG
back to top