mRNA_P-wetherbeei_contig57305.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57305.1.1
Unique NamemRNA_P-wetherbeei_contig57305.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A7X9AFM0_9BURK (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFM0_9BURK)

HSP 1 Score: 166 bits (419), Expect = 1.900e-47
Identity = 73/108 (67.59%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:   19 PQPFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDALAHL 342
            P+P  +GSR+ V I D+AAGGEAVGR+DNFV F+P GAPGDELEV++TE+KKNYGRA I ++ KPS+RR+ P CP+Y  CGGCQ+QHIDYDSQL  KTK V+DAL H+
Sbjct:    2 PEPLAIGSRVRVTIHDLAAGGEAVGRVDNFVIFVPGGAPGDELEVQLTELKKNYGRARICRVFKPSIRRIVPRCPIYTACGGCQFQHIDYDSQLQFKTKMVEDALQHI 109
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A355TNL1_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD (Fragment) n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TNL1_9BACT)

HSP 1 Score: 142 bits (359), Expect = 1.190e-38
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:   28 FKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDALAHL 342
              +G R+ + I D A GGEAVGR+ NFV FIP  +PGD++E ++TE+KKNYGRA I +II PS+RR+QP CPVY +CGGC  QH++YDSQL  KTK V+DAL H+
Sbjct:    5 LSVGQRVELTINDFAVGGEAVGRVGNFVLFIPGASPGDKVEAQITELKKNYGRARIHRIIVPSMRRIQPRCPVYSECGGCHLQHVNYDSQLEFKTKMVQDALRHI 109
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A4P5ZFV3_9BACT (TRAM domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5ZFV3_9BACT)

HSP 1 Score: 125 bits (313), Expect = 5.520e-32
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:    7 QPTSPQPFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDALAHL 342
            QPT P PFK+G  I ++I+D+A GGE VGR+D FV F+P    G+ +  E+TE+KK++ RA + K+I  S  RV+P C  Y+QCGGCQYQH+ Y +QL  K K + D L  +
Sbjct:   15 QPTPPPPFKIGDSITIEIQDIAFGGEGVGRVDGFVVFVPFVGRGETVTAEITELKKSFARAKLLKVITASPDRVEPQCRYYMQCGGCQYQHLAYPAQLQLKHKQISDLLRRI 126
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A2N2J2Y2_9DELT (TRAM domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A2N2J2Y2_9DELT)

HSP 1 Score: 124 bits (311), Expect = 9.550e-32
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:   28 FKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDA 330
             ++  RI++KI+ +A GGE VGR+DNFV F+P  APGDELEVE+T++KK + R  I KIIKPS  R +P C  Y +CGGC YQH+DY+ QL  K K V++A
Sbjct:    1 MQIKDRIIIKIDSVAFGGEGVGRIDNFVVFVPFSAPGDELEVEITQLKKRFVRGRILKIIKPSPWRTKPLCRYYEKCGGCCYQHLDYEYQLSIKKKQVQEA 101
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: UPI00200B3109 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Natroniella acetigena TaxID=52004 RepID=UPI00200B3109)

HSP 1 Score: 124 bits (310), Expect = 3.200e-31
Identity = 52/107 (48.60%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:   22 QPFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDALAHL 342
            +P ++G +I++++ED+A GG+AVGR+D FV FI  G PG++++VE+T++KK+YGRA IS+++K S  RVQP C     CGGCQ  ++DY +QL  K K VKD +  +
Sbjct:    4 KPVRVGEKIMIELEDLATGGDAVGRIDGFVIFISGGIPGEKVKVEITQVKKSYGRAKISEVVKRSAERVQPSCQEDEDCGGCQISYLDYQAQLKYKRKIVKDTIERI 110
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: UPI00200A204D (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Natroniella sulfidigena TaxID=723921 RepID=UPI00200A204D)

HSP 1 Score: 123 bits (308), Expect = 6.200e-31
Identity = 52/107 (48.60%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:   22 QPFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDALAHL 342
            +P K+G  I++++ED+A GG+AVGR+D FV FIP G PG+ ++VE+T++KK+YGRA I ++I+ S  RVQP C     CGGCQ  ++DY +QL  K K V+D +  +
Sbjct:    4 KPIKVGEEIIIELEDLATGGDAVGRVDGFVIFIPGGIPGETVKVEITQVKKSYGRAKIIEVIEQSAERVQPSCQEDEDCGGCQISYLDYQAQLKYKRKIVRDTIERI 110
[Close]
BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A3C1VD32_9BACT (RNA methyltransferase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A3C1VD32_9BACT)

HSP 1 Score: 120 bits (301), Expect = 2.240e-30
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:   25 PFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKD 327
            PF++G+++ + I D+A GGE VGR D+FV F+P    G+ +E E+TE+KKN+ RA +  +I PS  RV+PPC  + +CGGCQYQH+DY +QL  K K + D
Sbjct:    2 PFQIGNKLTLTIHDIAFGGEGVGRTDDFVVFVPFVIVGETVEAEITEVKKNFARAKLLCVITPSPERVEPPCQYFTRCGGCQYQHMDYATQLQMKQKQIAD 102
[Close]
BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A0C1S1A9_9DELT (TRAM domain-containing protein (Fragment) n=1 Tax=Smithella sp. SC_K08D17 TaxID=1487949 RepID=A0A0C1S1A9_9DELT)

HSP 1 Score: 116 bits (290), Expect = 2.760e-30
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   28 FKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDA 330
             ++  R ++KIE +A GG+ VGR+DNFV F+P  APGDELE+E+T++KK +    I KIIKPS  R +P C  Y  CGGC YQH++Y+ QL  K K V++A
Sbjct:    1 MQIKDRAIIKIESVAFGGDGVGRIDNFVAFVPFSAPGDELEIEITQLKKKFLCGRILKIIKPSPFRAKPLCRYYENCGGCCYQHLNYEHQLAIKKKQVEEA 101
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BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A7W1VUG5_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VUG5_9BACT)

HSP 1 Score: 120 bits (300), Expect = 3.450e-30
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   25 PFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKD 327
            P  +GSR+ VKIED+A GGE V RL  FV F+P    G+ +EVE+TE+KKN+ RA + KI++ S +RV P CP +  CGGCQYQHIDY +QL  K K + D
Sbjct:    8 PCAVGSRVTVKIEDIAFGGEGVARLQEFVVFVPFVVIGELVEVEITELKKNFARAQLVKILEASQQRVDPLCPYFGDCGGCQYQHIDYGAQLKMKHKQIVD 108
[Close]
BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Match: A0A2N2I205_9DELT (TRAM domain-containing protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 TaxID=2013747 RepID=A0A2N2I205_9DELT)

HSP 1 Score: 118 bits (295), Expect = 2.100e-29
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:   28 FKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELEVEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQLFQKTKAVKDA 330
             ++  R ++KIE +A GG  VGR+DNFV F+P  APGDELE+E+T++KK + R  I K+IKPS  R +P C  Y +CGGC YQH++Y+ QL  K K V++A
Sbjct:    3 LQIKDRAIIKIESVAFGGAGVGRIDNFVAFVPFSAPGDELEIEITQLKKKFLRGRILKVIKPSPFRAKPLCRYYEKCGGCCYQHVNYEHQLQIKKKQVQEA 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57305.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFM0_9BURK1.900e-4767.5923S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A355TNL1_9BACT1.190e-3860.0023S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A4P5ZFV3_9BACT5.520e-3249.11TRAM domain-containing protein n=1 Tax=Verrucomicr... [more]
A0A2N2J2Y2_9DELT9.550e-3255.45TRAM domain-containing protein n=2 Tax=unclassifie... [more]
UPI00200B31093.200e-3148.6023S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
UPI00200A204D6.200e-3148.6023S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A3C1VD32_9BACT2.240e-3049.50RNA methyltransferase n=1 Tax=Verrucomicrobia subd... [more]
A0A0C1S1A9_9DELT2.760e-3051.49TRAM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7W1VUG5_9BACT3.450e-3054.46Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A2N2I205_9DELT2.100e-2951.49TRAM domain-containing protein n=1 Tax=Deltaproteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57305contigP-wetherbeei_contig57305:119..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog591001.Acfer_1736
Preferred namerumA
PFAMsTRAM,tRNA_U5-meth_tr
Model size342
Max annot lvl909932|Negativicutes
KEGG koko:K03215
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-28
EggNOG OGsCOG2265@1|root,COG2265@2|Bacteria,1TP4H@1239|Firmicutes,4H2QM@909932|Negativicutes
EC2.1.1.190
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Cds size342
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.2787173-CDS-P-wetherbeei_contig57305:118..4601683186850.2787173-CDS-P-wetherbeei_contig57305:118..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57305 119..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57305.1.1prot_P-wetherbeei_contig57305.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57305 119..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57305.1.1

>prot_P-wetherbeei_contig57305.1.1 ID=prot_P-wetherbeei_contig57305.1.1|Name=mRNA_P-wetherbeei_contig57305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MSQPTSPQPFKLGSRIVVKIEDMAAGGEAVGRLDNFVFFIPLGAPGDELE
VEVTEIKKNYGRAVISKIIKPSVRRVQPPCPVYVQCGGCQYQHIDYDSQL
FQKTKAVKDALAHL
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mRNA from alignment at P-wetherbeei_contig57305:119..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57305.1.1 ID=mRNA_P-wetherbeei_contig57305.1.1|Name=mRNA_P-wetherbeei_contig57305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig57305:119..460+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCAGCCTACTTCCCCGCAGCCCTTTAAACTCGGTTCACGCATTGT
CGTGAAGATCGAGGACATGGCAGCCGGAGGCGAGGCCGTGGGCCGTCTCG
ATAACTTCGTTTTCTTTATACCTCTAGGCGCCCCCGGCGACGAACTCGAG
GTCGAGGTTACCGAGATCAAGAAGAACTACGGCCGCGCTGTCATCTCTAA
GATCATCAAGCCCTCCGTGCGTCGCGTCCAGCCCCCCTGCCCGGTCTACG
TCCAGTGCGGCGGCTGCCAGTATCAGCATATCGATTACGACTCGCAGCTC
TTTCAGAAGACGAAGGCAGTAAAAGACGCGCTCGCACATCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57305:119..460+

>mRNA_P-wetherbeei_contig57305.1.1 ID=mRNA_P-wetherbeei_contig57305.1.1|Name=mRNA_P-wetherbeei_contig57305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig57305:119..460+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCAGCCTACTTCCCCGCAGCCCTTTAAACTCGGTTCACGCATTGT
CGTGAAGATCGAGGACATGGCAGCCGGAGGCGAGGCCGTGGGCCGTCTCG
ATAACTTCGTTTTCTTTATACCTCTAGGCGCCCCCGGCGACGAACTCGAG
GTCGAGGTTACCGAGATCAAGAAGAACTACGGCCGCGCTGTCATCTCTAA
GATCATCAAGCCCTCCGTGCGTCGCGTCCAGCCCCCCTGCCCGGTCTACG
TCCAGTGCGGCGGCTGCCAGTATCAGCATATCGATTACGACTCGCAGCTC
TTTCAGAAGACGAAGGCAGTAAAAGACGCGCTCGCACATCTC
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