mRNA_P-wetherbeei_contig57304.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57304.1.1
Unique NamemRNA_P-wetherbeei_contig57304.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: UPI001BAB0DC1 (DUF2207 domain-containing protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAB0DC1)

HSP 1 Score: 256 bits (655), Expect = 1.670e-79
Identity = 122/170 (71.76%), Postives = 139/170 (81.76%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            IKRGILRDFPTSYAN DGTRVEV FDV  VTRDG++EAYA ERL NG RVRIG AD +L  G+HTY+I YRT+RQ+GFF + DELYWNATG GWT PI++AEA I LPE VPFRQSA YTGPQGA+ KDA V  Q  G IVFRTT+ LP R+GLTVAAGW+KG++  PS+
Sbjct:   48 IKRGILRDFPTSYANRDGTRVEVGFDVRSVTRDGMTEAYATERLGNGVRVRIGRADTLLANGSHTYVITYRTTRQVGFFAEYDELYWNATGNGWTFPIDVAEAHIHLPEAVPFRQSAFYTGPQGAQGKDALVAEQRPGLIVFRTTQQLPPRNGLTVAAGWQKGVVTPPST 217          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: UPI0017FA5359 (DUF2207 domain-containing protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017FA5359)

HSP 1 Score: 248 bits (633), Expect = 4.070e-76
Identity = 119/169 (70.41%), Postives = 139/169 (82.25%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPS 507
            I+RGILRDFPT Y   +GTRVEV FDV GV RDG +E +A E L+NG R+RIGSAD +L  G HTY+I+YRT+RQIGFF DVDELYWNATGTGWT  I++AEARITLPE VPFR+SALYTGPQGA  +DATV+ Q  G IVFRTTRPLP R+GLTVA  W+KG++A P+
Sbjct:   69 IRRGILRDFPTIYTRPNGTRVEVGFDVLGVERDGRTEPFAREVLTNGVRLRIGSADTLLRSGPHTYVIRYRTTRQIGFFDDVDELYWNATGTGWTFGIDVAEARITLPEAVPFRRSALYTGPQGATGRDATVIEQQPGRIVFRTTRPLPPRNGLTVATAWQKGVVAPPT 237          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A6N7GZK9_9HYPH (DUF2207 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GZK9_9HYPH)

HSP 1 Score: 246 bits (628), Expect = 1.860e-75
Identity = 112/170 (65.88%), Postives = 137/170 (80.59%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGI RDFPT Y   DG+ VE+ F +  VTR+G +E   +ERL+NG R+RIGSAD+ + RG HTY+I+YRT+RQIGFF D DELYWNATG GW  PI+ AEARITLPENVPFRQ+A+YTGPQG   +DAT+V Q GG IVFRTTRPLPAR+GLTVAA W+KG++  P++
Sbjct:   56 IRRGIFRDFPTIYTRPDGSGVEIGFQLESVTRNGSAENTVIERLANGVRIRIGSADREIPRGQHTYVIRYRTTRQIGFFTDYDELYWNATGNGWIFPIDRAEARITLPENVPFRQTAIYTGPQGGTGRDATIVEQQGGRIVFRTTRPLPARNGLTVAAAWQKGVVEPPTA 225          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A327L6U3_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L6U3_9HYPH)

HSP 1 Score: 241 bits (615), Expect = 1.610e-73
Identity = 117/169 (69.23%), Postives = 133/169 (78.70%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPS 507
            I+RGILRD PT Y   DGTRVEV FDV GV RDG +E +A E L+NG R+RIGS +  L  G HTY+I YRT+RQIGFF DVDELYWNATGTGWT  I++AEARITLPE VPFR+SA YTGPQGA   DATVV Q  G IVFRTTRPLP + GLTVAA W+KG++A P+
Sbjct:   64 IRRGILRDVPTVYTRRDGTRVEVGFDVLGVQRDGQAETFAREALANGVRLRIGSPETFLRSGPHTYVITYRTTRQIGFFDDVDELYWNATGTGWTFAIDVAEARITLPEAVPFRRSAFYTGPQGATGHDATVVEQRPGLIVFRTTRPLPPKSGLTVAAAWQKGIVAPPT 232          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A127EQS0_9HYPH (Transmembrane signal peptide protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EQS0_9HYPH)

HSP 1 Score: 239 bits (611), Expect = 7.370e-73
Identity = 113/170 (66.47%), Postives = 136/170 (80.00%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGILRDFPT+Y   DG+RVEV FDV  V RD + E +  ER++NG RVRIGSA   L+ G+HTY+IKYRT+RQIGFF   DELYWNATGTGWT PI++AEARITLPE VP +QSA+YTGPQGA  KDA +V Q  G IVFRTT+ LP  +GLTVAAGW+KG++A P++
Sbjct:   55 IRRGILRDFPTTYHRADGSRVEVGFDVQSVMRDDLYEQFTTERMTNGVRVRIGSAGVSLNTGSHTYVIKYRTTRQIGFFKSYDELYWNATGTGWTFPIDVAEARITLPEAVPIQQSAIYTGPQGAAGKDAIIVEQKPGLIVFRTTKRLPVANGLTVAAGWQKGVVAEPTT 224          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A363TUL2_9BRAD (DUF2207 domain-containing protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TUL2_9BRAD)

HSP 1 Score: 238 bits (606), Expect = 3.440e-72
Identity = 114/170 (67.06%), Postives = 131/170 (77.06%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGILRDFPT+Y   DG RVEV F+V  VTR G+ EA+A+ERL+NG RVRIG A+ +L  G H Y+I YRT+RQIGFF   DELYWNATGTGWT  IE  EARITLPE VP RQSA YTGPQGAR  DA V  Q+ G IVFRTT+PLP R GLTVAA W+KG++A P +
Sbjct:   57 IRRGILRDFPTTYHRRDGARVEVGFEVEQVTRGGMPEAFAIERLANGVRVRIGRANVLLPIGTHEYVISYRTTRQIGFFPAYDELYWNATGTGWTFAIEAVEARITLPERVPIRQSAFYTGPQGARGSDAQVAHQEPGVIVFRTTKPLPPRSGLTVAAAWDKGVVAEPDT 226          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: UPI000408EDD4 (DUF2207 domain-containing protein n=1 Tax=Kaistia adipata TaxID=166954 RepID=UPI000408EDD4)

HSP 1 Score: 237 bits (605), Expect = 5.020e-72
Identity = 114/170 (67.06%), Postives = 134/170 (78.82%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGILRDFPT+Y +E G  V V FDV  VTRDG  E +A+E L+NG RVRIGS D +LD G H Y+I+YRT+RQIGFF D DELYWNATGTGWT PI++AE RITLPE VPF Q+A+YTG QG R +DA VVS++ G IVFRTT PLPA  GLTVAA W KG++A PS+
Sbjct:   59 IRRGILRDFPTTYRDERGASVVVGFDVESVTRDGKDEPFAIESLANGKRVRIGSGDTLLDYGPHDYVIRYRTTRQIGFFDDFDELYWNATGTGWTFPIDVAETRITLPEAVPFGQTAIYTGRQGERGQDARVVSKEPGRIVFRTTAPLPANAGLTVAAAWLKGVVAPPSA 228          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A7R7T8H9_9HYPH (Uncharacterized protein n=1 Tax=Kaistia sp. 32K TaxID=2795690 RepID=A0A7R7T8H9_9HYPH)

HSP 1 Score: 237 bits (605), Expect = 5.220e-72
Identity = 113/170 (66.47%), Postives = 136/170 (80.00%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGILRDFPT+Y ++ G  V V FDV  VTRDG +E +A+E LSNG R+RIGSA+ +L  G H Y+I+YRT+RQIGFF D DELYWN TGTGWT PI++AEARITLPE VPF  +A+YTG QG R +DA VVS++ G IVFRTT PLPA +GLTVAA W KG++AAPSS
Sbjct:   62 IRRGILRDFPTTYRDDRGGSVVVGFDVESVTRDGQNEPFAIETLSNGKRIRIGSAETLLTPGPHDYVIRYRTNRQIGFFDDFDELYWNVTGTGWTFPIDVAEARITLPEAVPFGNTAIYTGQQGERGQDARVVSKEPGRIVFRTTAPLPAHNGLTVAAAWPKGVVAAPSS 231          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: A0A1W6ZK24_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZK24_9HYPH)

HSP 1 Score: 236 bits (602), Expect = 1.450e-71
Identity = 114/169 (67.46%), Postives = 130/169 (76.92%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPS 507
            I+RGILRDFPT Y   DG RVEV F+V  VTR G  E Y +ERLSNG R+RIG AD+ +  G  TY+I+YRT+RQIGFF + DELYWNATGTGWT PI++AEARITLPE V F QSA YTGPQGA  KDA ++ Q  G IVFRTTRPLP R GLTVAA W KG++A PS
Sbjct:   57 IRRGILRDFPTVYTVRDGRRVEVGFNVESVTRGGAEEDYKLERLSNGVRIRIGRADRTVTPGQVTYVIRYRTTRQIGFFQNFDELYWNATGTGWTFPIDVAEARITLPEPVNFTQSAFYTGPQGATGKDAAIIEQRPGVIVFRTTRPLPPRSGLTVAAAWPKGVVAPPS 225          
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Match: UPI000366CD4F (DUF2207 domain-containing protein n=1 Tax=Kaistia granuli TaxID=363259 RepID=UPI000366CD4F)

HSP 1 Score: 234 bits (598), Expect = 5.730e-71
Identity = 111/170 (65.29%), Postives = 134/170 (78.82%), Query Frame = 1
Query:    1 IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRVRIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEMAEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPARHGLTVAAGWEKGLIAAPSS 510
            I+RGILRDFPT+Y ++ G  V V FDV  VTRDG  E +A+E+LSNG R+RIGS D +L  G H Y+I+Y+T+RQIGFF D DELYWNATGTGWT PI++AEARITLPE VPF  +A+YTG QG R +DA +VS++ G IVFRTT PLPA  GLTVAA W KG++ APSS
Sbjct:   63 IRRGILRDFPTTYRDDKGGSVVVGFDVESVTRDGRDEPFAIEQLSNGKRIRIGSGDTLLTPGPHDYVIRYKTTRQIGFFDDFDELYWNATGTGWTFPIDVAEARITLPEAVPFGNTAIYTGHQGERGQDARIVSKEPGRIVFRTTEPLPAHSGLTVAAAWPKGVVDAPSS 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57304.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BAB0DC11.670e-7971.76DUF2207 domain-containing protein n=1 Tax=unclassi... [more]
UPI0017FA53594.070e-7670.41DUF2207 domain-containing protein n=1 Tax=Rhodopla... [more]
A0A6N7GZK9_9HYPH1.860e-7565.88DUF2207 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A327L6U3_9HYPH1.610e-7369.23Uncharacterized protein n=1 Tax=Rhodoplanes roseus... [more]
A0A127EQS0_9HYPH7.370e-7366.47Transmembrane signal peptide protein n=1 Tax=Rhodo... [more]
A0A363TUL2_9BRAD3.440e-7267.06DUF2207 domain-containing protein n=1 Tax=Bradyrhi... [more]
UPI000408EDD45.020e-7267.06DUF2207 domain-containing protein n=1 Tax=Kaistia ... [more]
A0A7R7T8H9_9HYPH5.220e-7266.47Uncharacterized protein n=1 Tax=Kaistia sp. 32K Ta... [more]
A0A1W6ZK24_9HYPH1.450e-7167.46Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
UPI000366CD4F5.730e-7165.29DUF2207 domain-containing protein n=1 Tax=Kaistia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57304contigP-wetherbeei_contig57304:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122132.AQYH01000008_gene2660
PFAMsDUF2207
Model size510
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.39e-72
EggNOG OGsCOG4907@1|root,COG4907@2|Bacteria,1MXPY@1224|Proteobacteria,2TUBP@28211|Alphaproteobacteria,4B77J@82115|Rhizobiaceae
DescriptionPredicted membrane protein (DUF2207)
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.2306964-CDS-P-wetherbeei_contig57304:1..5111683186850.2306964-CDS-P-wetherbeei_contig57304:1..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57304 2..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57304.1.1prot_P-wetherbeei_contig57304.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57304 2..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57304.1.1

>prot_P-wetherbeei_contig57304.1.1 ID=prot_P-wetherbeei_contig57304.1.1|Name=mRNA_P-wetherbeei_contig57304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
IKRGILRDFPTSYANEDGTRVEVDFDVHGVTRDGVSEAYAVERLSNGYRV
RIGSADKMLDRGAHTYIIKYRTSRQIGFFHDVDELYWNATGTGWTMPIEM
AEARITLPENVPFRQSALYTGPQGARDKDATVVSQDGGTIVFRTTRPLPA
RHGLTVAAGWEKGLIAAPSS
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mRNA from alignment at P-wetherbeei_contig57304:2..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57304.1.1 ID=mRNA_P-wetherbeei_contig57304.1.1|Name=mRNA_P-wetherbeei_contig57304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57304:2..511- (Phaeothamnion wetherbeei SAG_119_79)
ATCAAGCGCGGCATCCTGCGCGACTTTCCGACCAGCTATGCCAACGAGGA CGGCACCCGGGTTGAGGTCGATTTCGACGTGCATGGCGTGACGCGCGATG GCGTCAGCGAAGCGTATGCTGTTGAACGGCTGTCGAACGGCTACCGGGTT CGCATCGGTTCGGCCGACAAAATGCTCGATCGTGGCGCGCACACCTACAT CATCAAGTATCGCACTTCGCGGCAGATCGGCTTCTTCCATGACGTCGATG AGCTTTACTGGAACGCCACCGGCACCGGTTGGACCATGCCGATCGAGATG GCGGAGGCGAGGATCACGCTGCCGGAGAACGTGCCGTTCAGGCAGAGCGC ACTCTACACCGGCCCGCAGGGCGCCAGGGACAAGGACGCGACGGTCGTGT CGCAGGACGGCGGCACCATCGTCTTCCGCACCACCAGGCCGTTGCCGGCG CGACACGGCCTCACGGTCGCTGCCGGCTGGGAGAAGGGATTGATTGCGGC GCCGAGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57304:2..511-

>mRNA_P-wetherbeei_contig57304.1.1 ID=mRNA_P-wetherbeei_contig57304.1.1|Name=mRNA_P-wetherbeei_contig57304.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57304:2..511- (Phaeothamnion wetherbeei SAG_119_79)
ATCAAGCGCGGCATCCTGCGCGACTTTCCGACCAGCTATGCCAACGAGGA
CGGCACCCGGGTTGAGGTCGATTTCGACGTGCATGGCGTGACGCGCGATG
GCGTCAGCGAAGCGTATGCTGTTGAACGGCTGTCGAACGGCTACCGGGTT
CGCATCGGTTCGGCCGACAAAATGCTCGATCGTGGCGCGCACACCTACAT
CATCAAGTATCGCACTTCGCGGCAGATCGGCTTCTTCCATGACGTCGATG
AGCTTTACTGGAACGCCACCGGCACCGGTTGGACCATGCCGATCGAGATG
GCGGAGGCGAGGATCACGCTGCCGGAGAACGTGCCGTTCAGGCAGAGCGC
ACTCTACACCGGCCCGCAGGGCGCCAGGGACAAGGACGCGACGGTCGTGT
CGCAGGACGGCGGCACCATCGTCTTCCGCACCACCAGGCCGTTGCCGGCG
CGACACGGCCTCACGGTCGCTGCCGGCTGGGAGAAGGGATTGATTGCGGC
GCCGAGCAGC
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