mRNA_P-wetherbeei_contig573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig573.1.1
Unique NamemRNA_P-wetherbeei_contig573.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig573contigP-wetherbeei_contig573:3473..6636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3164
Hectar predicted targeting categoryother localisation
Exons1
Cds size2847
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.066978-UTR-P-wetherbeei_contig573:3472..35321683186850.066978-UTR-P-wetherbeei_contig573:3472..3532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig573 3473..3532 -
1683186850.0849643-UTR-P-wetherbeei_contig573:6379..66361683186850.0849643-UTR-P-wetherbeei_contig573:6379..6636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig573 6380..6636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.0765274-CDS-P-wetherbeei_contig573:3532..63791683186850.0765274-CDS-P-wetherbeei_contig573:3532..6379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig573 3533..6379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig573.1.1prot_P-wetherbeei_contig573.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig573 3533..6379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig573.1.1

>prot_P-wetherbeei_contig573.1.1 ID=prot_P-wetherbeei_contig573.1.1|Name=mRNA_P-wetherbeei_contig573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=949bp
MEARAALRSLEAALCRNDSTEVAQAAHWLAMHPRECSALEPAAAWTIISA
ARGAAEALLRPHAAYRLAGGTPPPLGVLLDAAADCLVALASWAAGVPRER
FALHTLPPGRDSADMTALCDAEALAYRLLQQSRSGNGGSAVDLALATRSL
LLLASLAWGRPAAIDFLWRELSAVAPGAAQLRRLLLDDGAALREVLRALL
VHLHPTAAAAAIPSFASAAAGEAAADAALSLACDVAESKLLRVAHAVIDA
FNTAALDTAGSKRLMGICRRVAAVCAAAAARDDVSAGGRKAAAALAAAGL
IQSLTARISAAAATALIAQGLLLATEAAGSAAAAGSAAERGLAMTVAVAL
AAAGPAVMSLAGGQLLDSSRALAGLVRTVAFEQLLVDAGGDNTGMLLSPA
LELVPELYRGLAWLEAAAALGSDTSAGGSGSGNATLPALLDKARAIYALG
RLSAENSVIGCLGRGHVVPPTTRLLIATSPVFQMWDATSAAALAFVEAAL
DAAESTRLQFVDSNGGGGGGAGGEDSVADFAELLSYRRFGCEDDAGQRLL
ERLVRRAEAGGDAVYRVLYAVPTPAEADSGGILLEDVQQAWPGLAAATQS
CSRGCNGRGDVSGDGGAAVFVADPLFGPRAAVYARCCEVWVAMVGHNVPE
ALCTRIVPFLLTCLRLPAAGRYVTAPGAAAANAAAHGTLLRLLSYPHILH
GVHASASGGIGGGGNGGGNGNGSDEARRRLVCRYFRVAAAAYPAATPTAA
LATALGLVVGSLGHDQRFHGPALFGLTTLRDRSLELLAEAAVPAAVGMPG
GVMHAAAAAAAEADVAVQAPLSLLFQALRIVPQPLLAPLMGLVAELVQRE
PRSGLRRGAAAAPAAAAAAAAGRQPWSVMGLLYDAISSGVEPARRSELAV
WYLSLANDAFFARRSAAQLPAEPSAMVPAAPGVGKRVSIAAGGQHAAL*
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mRNA from alignment at P-wetherbeei_contig573:3473..6636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig573.1.1 ID=mRNA_P-wetherbeei_contig573.1.1|Name=mRNA_P-wetherbeei_contig573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3164bp|location=Sequence derived from alignment at P-wetherbeei_contig573:3473..6636- (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCAAAAACGCCAAAAAACGACGATGGTGCTTGACCCTCTGCTTGAA
GCGCGGCTACCAAACCGTCCTTCCCTGCCGATGGAAAGCTAACTGGATCG
AGATGAACAGCCTCATCGTCTTGACTGGTGTGATTCTCGGCTACATAGCG
CTCTATTCTAGCTCTGCAGGTTACGGTCTCTGCTGGTTCTTCTCCATCAC
GTTCATGCTGCTTGCCGTCGTCAGCCGCTGAAGCAAAAGAGACAGCCTAT
TCAAGGAATGGAAGCACGAGCCGCACTCCGCAGCTTGGAGGCCGCTCTCT
GCCGCAATGACAGCACAGAAGTCGCCCAAGCCGCACACTGGCTGGCCATG
CATCCGCGGGAGTGCAGCGCTCTTGAACCTGCGGCTGCATGGACGATCAT
TTCTGCGGCCAGAGGCGCCGCAGAGGCGCTGCTACGCCCGCACGCCGCAT
ACCGCCTCGCGGGGGGCACTCCACCGCCGCTCGGCGTCCTCCTCGACGCG
GCGGCGGATTGCCTCGTCGCGCTGGCATCCTGGGCCGCCGGCGTGCCTCG
GGAACGCTTCGCGTTGCACACACTGCCACCTGGGAGAGACTCGGCAGACA
TGACTGCGCTCTGCGACGCCGAGGCGCTGGCCTACCGTCTGCTTCAGCAG
AGCCGCAGTGGCAATGGCGGAAGTGCGGTCGATCTGGCGCTGGCTACGCG
TTCTCTCCTACTGCTGGCGTCGTTGGCATGGGGGCGCCCGGCTGCAATCG
ACTTTTTGTGGAGGGAACTCTCGGCGGTGGCGCCTGGAGCTGCGCAGCTG
CGTCGCCTTCTGCTGGATGATGGCGCAGCGCTGCGGGAAGTCCTTCGCGC
GTTGCTTGTCCACCTTCACCCCACCGCCGCTGCGGCTGCCATTCCCTCTT
TCGCGTCAGCTGCAGCGGGAGAAGCGGCGGCCGATGCGGCGCTCAGCCTG
GCCTGCGACGTTGCCGAATCGAAGCTTCTCCGCGTCGCTCACGCCGTCAT
CGATGCATTCAATACGGCCGCACTCGACACCGCGGGTTCCAAAAGGTTGA
TGGGCATCTGCCGCCGCGTGGCAGCCGTTTGCGCCGCCGCCGCTGCGCGC
GACGACGTGAGCGCCGGCGGTCGAAAAGCCGCAGCTGCGCTGGCCGCCGC
CGGACTCATCCAGAGCTTGACTGCCAGAATTAGCGCCGCCGCAGCGACGG
CGCTCATTGCGCAGGGACTGCTTCTCGCAACTGAAGCGGCCGGGTCTGCG
GCAGCTGCGGGGTCGGCAGCGGAACGCGGGCTGGCCATGACGGTTGCGGT
GGCACTGGCGGCGGCGGGGCCGGCGGTGATGTCGCTTGCCGGCGGCCAAT
TGCTTGACAGCAGCCGAGCTTTGGCGGGGCTTGTCAGGACGGTAGCGTTT
GAGCAGCTGCTAGTGGATGCTGGCGGCGACAACACCGGTATGCTTTTGTC
ACCCGCACTCGAGCTGGTGCCGGAACTCTACCGTGGCCTAGCTTGGCTGG
AGGCAGCAGCGGCTCTCGGCAGTGACACGAGCGCTGGCGGCAGCGGCAGT
GGTAACGCGACCCTCCCGGCGCTTCTTGATAAGGCACGGGCCATTTATGC
TTTGGGGCGCCTCTCTGCAGAGAATTCCGTTATTGGCTGTTTGGGCAGGG
GCCATGTGGTCCCGCCGACTACGCGCCTTCTGATTGCAACGTCGCCAGTC
TTTCAGATGTGGGACGCGACCTCCGCCGCCGCACTGGCGTTTGTCGAGGC
AGCGCTGGATGCTGCAGAGAGCACAAGATTGCAGTTCGTTGACAGCAACG
GCGGCGGTGGTGGCGGCGCTGGCGGCGAAGACAGCGTCGCTGACTTCGCG
GAGCTGCTCTCATATCGACGATTCGGCTGCGAGGACGACGCTGGCCAGCG
CCTGCTCGAACGGCTCGTCCGGCGCGCCGAGGCGGGCGGCGACGCCGTCT
ACCGTGTGCTCTACGCCGTCCCGACTCCGGCGGAGGCGGATAGCGGCGGC
ATTTTGTTAGAAGACGTCCAGCAGGCGTGGCCTGGTCTTGCCGCTGCCAC
CCAAAGCTGCAGTCGCGGCTGCAACGGCAGAGGCGACGTCAGCGGCGACG
GCGGCGCTGCCGTGTTTGTCGCCGACCCACTGTTTGGGCCGCGCGCCGCC
GTGTACGCACGGTGCTGCGAGGTGTGGGTGGCAATGGTGGGGCATAACGT
ACCCGAGGCGCTCTGCACCCGCATCGTCCCGTTTCTGCTGACGTGCCTGC
GGCTCCCGGCAGCGGGCCGCTACGTGACAGCGCCGGGTGCCGCCGCGGCC
AACGCCGCCGCGCACGGTACCCTCTTGCGGCTTCTCAGTTACCCGCATAT
CTTGCACGGCGTACACGCCTCGGCGTCCGGCGGCATTGGCGGAGGCGGAA
ACGGTGGAGGAAATGGAAACGGCAGCGATGAGGCGCGGCGGAGGCTGGTC
TGCCGGTACTTTAGGGTGGCGGCGGCAGCGTACCCGGCGGCGACGCCGAC
GGCGGCACTGGCGACGGCGCTAGGGCTGGTGGTCGGCTCACTGGGCCACG
ACCAGCGCTTCCACGGGCCAGCCCTCTTCGGCTTGACTACTTTGCGGGAC
CGCTCTTTGGAACTGCTCGCAGAGGCGGCTGTGCCGGCTGCGGTGGGAAT
GCCTGGAGGAGTGATGCACGCGGCGGCAGCGGCGGCTGCAGAAGCGGATG
TGGCGGTGCAGGCGCCGCTGTCGCTGCTGTTCCAGGCACTGCGGATCGTT
CCGCAACCGCTGCTGGCGCCGCTGATGGGCCTGGTGGCGGAGCTGGTGCA
GCGGGAGCCGCGGAGCGGTCTGCGCCGCGGCGCAGCGGCTGCGCCGGCGG
CAGCGGCGGCGGCGGCGGCGGGGCGTCAGCCGTGGAGCGTCATGGGGCTG
CTGTATGATGCCATATCGTCGGGCGTGGAGCCCGCAAGGCGCAGCGAGCT
GGCGGTGTGGTACCTAAGCCTTGCCAACGACGCCTTCTTTGCCCGGCGCT
CGGCAGCGCAGCTGCCGGCGGAGCCATCAGCGATGGTGCCGGCGGCGCCT
GGCGTGGGAAAGCGTGTGTCCATAGCGGCGGGGGGGCAGCATGCCGCCTT
GTGACCGCCAGCGGAGAGTGGAGTACGGTGAGAGAGACGAAACTCTTTTC
GTAAATTTACCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig573:3473..6636-

>mRNA_P-wetherbeei_contig573.1.1 ID=mRNA_P-wetherbeei_contig573.1.1|Name=mRNA_P-wetherbeei_contig573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2847bp|location=Sequence derived from alignment at P-wetherbeei_contig573:3473..6636- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCACGAGCCGCACTCCGCAGCTTGGAGGCCGCTCTCTGCCGCAA
TGACAGCACAGAAGTCGCCCAAGCCGCACACTGGCTGGCCATGCATCCGC
GGGAGTGCAGCGCTCTTGAACCTGCGGCTGCATGGACGATCATTTCTGCG
GCCAGAGGCGCCGCAGAGGCGCTGCTACGCCCGCACGCCGCATACCGCCT
CGCGGGGGGCACTCCACCGCCGCTCGGCGTCCTCCTCGACGCGGCGGCGG
ATTGCCTCGTCGCGCTGGCATCCTGGGCCGCCGGCGTGCCTCGGGAACGC
TTCGCGTTGCACACACTGCCACCTGGGAGAGACTCGGCAGACATGACTGC
GCTCTGCGACGCCGAGGCGCTGGCCTACCGTCTGCTTCAGCAGAGCCGCA
GTGGCAATGGCGGAAGTGCGGTCGATCTGGCGCTGGCTACGCGTTCTCTC
CTACTGCTGGCGTCGTTGGCATGGGGGCGCCCGGCTGCAATCGACTTTTT
GTGGAGGGAACTCTCGGCGGTGGCGCCTGGAGCTGCGCAGCTGCGTCGCC
TTCTGCTGGATGATGGCGCAGCGCTGCGGGAAGTCCTTCGCGCGTTGCTT
GTCCACCTTCACCCCACCGCCGCTGCGGCTGCCATTCCCTCTTTCGCGTC
AGCTGCAGCGGGAGAAGCGGCGGCCGATGCGGCGCTCAGCCTGGCCTGCG
ACGTTGCCGAATCGAAGCTTCTCCGCGTCGCTCACGCCGTCATCGATGCA
TTCAATACGGCCGCACTCGACACCGCGGGTTCCAAAAGGTTGATGGGCAT
CTGCCGCCGCGTGGCAGCCGTTTGCGCCGCCGCCGCTGCGCGCGACGACG
TGAGCGCCGGCGGTCGAAAAGCCGCAGCTGCGCTGGCCGCCGCCGGACTC
ATCCAGAGCTTGACTGCCAGAATTAGCGCCGCCGCAGCGACGGCGCTCAT
TGCGCAGGGACTGCTTCTCGCAACTGAAGCGGCCGGGTCTGCGGCAGCTG
CGGGGTCGGCAGCGGAACGCGGGCTGGCCATGACGGTTGCGGTGGCACTG
GCGGCGGCGGGGCCGGCGGTGATGTCGCTTGCCGGCGGCCAATTGCTTGA
CAGCAGCCGAGCTTTGGCGGGGCTTGTCAGGACGGTAGCGTTTGAGCAGC
TGCTAGTGGATGCTGGCGGCGACAACACCGGTATGCTTTTGTCACCCGCA
CTCGAGCTGGTGCCGGAACTCTACCGTGGCCTAGCTTGGCTGGAGGCAGC
AGCGGCTCTCGGCAGTGACACGAGCGCTGGCGGCAGCGGCAGTGGTAACG
CGACCCTCCCGGCGCTTCTTGATAAGGCACGGGCCATTTATGCTTTGGGG
CGCCTCTCTGCAGAGAATTCCGTTATTGGCTGTTTGGGCAGGGGCCATGT
GGTCCCGCCGACTACGCGCCTTCTGATTGCAACGTCGCCAGTCTTTCAGA
TGTGGGACGCGACCTCCGCCGCCGCACTGGCGTTTGTCGAGGCAGCGCTG
GATGCTGCAGAGAGCACAAGATTGCAGTTCGTTGACAGCAACGGCGGCGG
TGGTGGCGGCGCTGGCGGCGAAGACAGCGTCGCTGACTTCGCGGAGCTGC
TCTCATATCGACGATTCGGCTGCGAGGACGACGCTGGCCAGCGCCTGCTC
GAACGGCTCGTCCGGCGCGCCGAGGCGGGCGGCGACGCCGTCTACCGTGT
GCTCTACGCCGTCCCGACTCCGGCGGAGGCGGATAGCGGCGGCATTTTGT
TAGAAGACGTCCAGCAGGCGTGGCCTGGTCTTGCCGCTGCCACCCAAAGC
TGCAGTCGCGGCTGCAACGGCAGAGGCGACGTCAGCGGCGACGGCGGCGC
TGCCGTGTTTGTCGCCGACCCACTGTTTGGGCCGCGCGCCGCCGTGTACG
CACGGTGCTGCGAGGTGTGGGTGGCAATGGTGGGGCATAACGTACCCGAG
GCGCTCTGCACCCGCATCGTCCCGTTTCTGCTGACGTGCCTGCGGCTCCC
GGCAGCGGGCCGCTACGTGACAGCGCCGGGTGCCGCCGCGGCCAACGCCG
CCGCGCACGGTACCCTCTTGCGGCTTCTCAGTTACCCGCATATCTTGCAC
GGCGTACACGCCTCGGCGTCCGGCGGCATTGGCGGAGGCGGAAACGGTGG
AGGAAATGGAAACGGCAGCGATGAGGCGCGGCGGAGGCTGGTCTGCCGGT
ACTTTAGGGTGGCGGCGGCAGCGTACCCGGCGGCGACGCCGACGGCGGCA
CTGGCGACGGCGCTAGGGCTGGTGGTCGGCTCACTGGGCCACGACCAGCG
CTTCCACGGGCCAGCCCTCTTCGGCTTGACTACTTTGCGGGACCGCTCTT
TGGAACTGCTCGCAGAGGCGGCTGTGCCGGCTGCGGTGGGAATGCCTGGA
GGAGTGATGCACGCGGCGGCAGCGGCGGCTGCAGAAGCGGATGTGGCGGT
GCAGGCGCCGCTGTCGCTGCTGTTCCAGGCACTGCGGATCGTTCCGCAAC
CGCTGCTGGCGCCGCTGATGGGCCTGGTGGCGGAGCTGGTGCAGCGGGAG
CCGCGGAGCGGTCTGCGCCGCGGCGCAGCGGCTGCGCCGGCGGCAGCGGC
GGCGGCGGCGGCGGGGCGTCAGCCGTGGAGCGTCATGGGGCTGCTGTATG
ATGCCATATCGTCGGGCGTGGAGCCCGCAAGGCGCAGCGAGCTGGCGGTG
TGGTACCTAAGCCTTGCCAACGACGCCTTCTTTGCCCGGCGCTCGGCAGC
GCAGCTGCCGGCGGAGCCATCAGCGATGGTGCCGGCGGCGCCTGGCGTGG
GAAAGCGTGTGTCCATAGCGGCGGGGGGGCAGCATGCCGCCTTGTGA
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