mRNA_P-wetherbeei_contig57290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A3D5DE01_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DE01_9GAMM) HSP 1 Score: 65.9 bits (159), Expect = 2.150e-11 Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1
Query: 55 QGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPL 180
Q +AYP GQSE+Q+S+D++ECHQW+V QTGF+P+TAPPL
Sbjct: 26 QSQIFAYPIGGQSEEQVSRDKFECHQWAVGQTGFNPATAPPL 67
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A661CBZ7_9GAMM (Gly-zipper_Omp domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661CBZ7_9GAMM) HSP 1 Score: 65.1 bits (157), Expect = 3.910e-10 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 28 LGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASATXXXXXXXXXXGNQPQTQQPSAGGFLGIGNGGMLPGSGVMGDAATGAALGA 342
+G A+ GG YAYP+AGQS++Q++KD+Y CH W+V +TG+DP+ A +S XXXXXXXXXXG+ G+ G G G GV+ DAA GAALGA
Sbjct: 1 MGPASAAGIGGGVYAYPSAGQSQEQVNKDKYYCHNWAVIETGYDPTVA---SSXXXXXXXXXXXXGSS---------GYFGSGETGE---GGVVKDAAGGAALGA 90
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A2N8SUE8_PSEST (Uncharacterized protein n=3 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A2N8SUE8_PSEST) HSP 1 Score: 62.8 bits (151), Expect = 6.840e-10 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
VPA + G Y AYP GQS +Q S+DRYECH W+VSQ+GFDP+TA AT
Sbjct: 29 VPASEAGRYDVIAYPAKGQSAEQQSRDRYECHTWAVSQSGFDPATAQSAPPAT 81
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: W8RXX1_PSEST (Uncharacterized protein n=2 Tax=Pseudomonas stutzeri TaxID=316 RepID=W8RXX1_PSEST) HSP 1 Score: 60.1 bits (144), Expect = 7.390e-9 Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
V + G Y AYP +GQS +Q S+DRYECH WSVSQ+GFDP+TA AT
Sbjct: 29 VQVSEAGRYDVIAYPASGQSAEQQSRDRYECHTWSVSQSGFDPATAQSAPPAT 81
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI001F1DA398 (YMGG-like glycine zipper-containing protein n=2 Tax=Methylomicrobium sp. RS1 TaxID=2802053 RepID=UPI001F1DA398) HSP 1 Score: 60.5 bits (145), Expect = 1.670e-8 Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 7 LVMTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
L + +LG V Q YP GQS +QLSKDRYECH W+V Q+GFDPSTA
Sbjct: 9 LSLIAASLGLLAVVPAQADIMIYPMKGQSSEQLSKDRYECHVWAVQQSGFDPSTA 63
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A562QAH6_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas duriflava TaxID=459528 RepID=A0A562QAH6_9PSED) HSP 1 Score: 59.3 bits (142), Expect = 5.430e-8 Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 37 ATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA---PPLASA 189
ATV +Q AYP GQ+ +Q +DRYECH+W+VSQ+GFDP+TA PP+ S+
Sbjct: 94 ATVSSQTYDVIAYPARGQTVEQQGQDRYECHKWAVSQSGFDPATANTAPPVTSS 147
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A7Y4W161_9GAMM (Gly-zipper_OmpA domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y4W161_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 8.700e-8 Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1
Query: 10 VMTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
+ T L + V G YP GQS QLSKDRYECH W+V Q+GFDPS+ P ++
Sbjct: 10 ITTTLLMAALPVSVFAQGVMVYPAQGQSPDQLSKDRYECHTWAVQQSGFDPSSGAPAPQSS 70
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI0010A64F5F (DUF6515 family protein n=4 Tax=Pseudomonas TaxID=286 RepID=UPI0010A64F5F) HSP 1 Score: 59.7 bits (143), Expect = 1.160e-7 Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query: 70 AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
AYP AGQS +QL +DRYECH+W+V QTGFDP+TA
Sbjct: 193 AYPAAGQSPEQLDRDRYECHRWAVQQTGFDPATA 226
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: W9TIA4_9PSED (Uncharacterized protein n=3 Tax=Pseudomonas TaxID=286 RepID=W9TIA4_9PSED) HSP 1 Score: 58.2 bits (139), Expect = 1.470e-7 Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
+PA + Y AYP GQS +Q S+DRYECH W+VSQ+GFDP+TA +A+
Sbjct: 93 LPASEATRYDVIAYPAKGQSAEQQSRDRYECHSWAVSQSGFDPATAQSAPAAS 145
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI000409B71C (DUF6515 family protein n=5 Tax=Pseudomonas TaxID=286 RepID=UPI000409B71C) HSP 1 Score: 58.9 bits (141), Expect = 2.700e-7 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 46 PAQQGG--AYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
PA+QGG AYP GQ QQ +DRY+CH+W+VSQ+GFDP+TA
Sbjct: 215 PAEQGGYDVVAYPMYGQGPQQQEQDRYQCHRWAVSQSGFDPATA 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57290.1.1 >prot_P-wetherbeei_contig57290.1.1 ID=prot_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp MTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPback to top mRNA from alignment at P-wetherbeei_contig57290:21..512+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57290.1.1 ID=mRNA_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57290:21..512+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57290:21..512+ >mRNA_P-wetherbeei_contig57290.1.1 ID=mRNA_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig57290:21..512+ (Phaeothamnion wetherbeei SAG_119_79)back to top |