mRNA_P-wetherbeei_contig57279.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57279.1.1
Unique NamemRNA_P-wetherbeei_contig57279.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A2P1VJS0_9BURK (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Variovorax TaxID=34072 RepID=A0A2P1VJS0_9BURK)

HSP 1 Score: 156 bits (395), Expect = 4.230e-45
Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWPAGDAGS 393
            RIGL+PD GA YTLPR+VG+ RA+E+++SAREI AAEAR LG+ +E+   + LMPRAL++A + A ASP+A+S++K AL SSLGSDL TML+IEAAGQ +A  S+YAKE+ RRFA+REPA+F WPA  AGS
Sbjct:  136 RIGLVPDMGAYYTLPRVVGLQRAKELIFSAREIDAAEARQLGIAMEVLPAENLMPRALAIARSFAGASPVAMSVSKRALQSSLGSDLPTMLEIEAAGQALASNSEYAKEAVRRFASREPAQFRWPA--AGS 264          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: UPI0019CB3091 (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019CB3091)

HSP 1 Score: 152 bits (385), Expect = 1.040e-43
Identity = 80/119 (67.23%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREP 357
            RIGL+PDYGALYTLPR VG+ RA+EIM+SAREIGAAEARDLGLVLE+   DAL+PRA+++A  L  ASP AL++TK AL+ SL S L ++L++EAAGQG+AG+S YAK++FRRFA ++P
Sbjct:  136 RIGLVPDYGALYTLPRAVGVQRAKEIMFSAREIGAAEARDLGLVLEVLAPDALLPRAIAMARTLVHASPTALAMTKEALNGSLNSSLDSLLELEAAGQGVAGSSAYAKDAFRRFANKQP 254          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A519ZAI2_9BURK (Enoyl-CoA hydratase/isomerase family protein (Fragment) n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519ZAI2_9BURK)

HSP 1 Score: 145 bits (367), Expect = 6.820e-42
Identity = 78/125 (62.40%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWP 375
            RIGL+PD+GALYTLPRIVG+ RA+E+MYSAREI   EA ++G+ LE+     L+PRA +LA +L  AS  A+S+TK AL++SLGSDLATML++EA GQ IA +SDY KES RRF A+EP +F WP
Sbjct:   44 RIGLVPDFGALYTLPRIVGLQRAKELMYSAREIVPQEALNMGIALEVLPAGELLPRAQALARSLCGASDAAMSVTKQALNASLGSDLATMLEMEATGQAIAASSDYLKESARRFVAKEPPQFRWP 168          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A1Y2R419_9BURK (Enoyl-CoA hydratase n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R419_9BURK)

HSP 1 Score: 146 bits (369), Expect = 4.730e-41
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWP 375
            RIGL+PD+GALYTLPRIVG+ RA+E+MYSAREIG  EA  +G+ LE+     L+PRA +LA +L  AS  A+S+TK AL++SLGSDL TML++EA GQ IA +SDY KES RRF A+EP +F WP
Sbjct:  139 RIGLVPDFGALYTLPRIVGLQRAKELMYSAREIGPQEALSMGIALEVLPAGELLPRAQALAQSLCGASDAAMSVTKQALNASLGSDLTTMLEMEANGQAIAASSDYLKESARRFVAKEPPQFRWP 263          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A679JLW3_VARPD (Short-chain-enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=A0A679JLW3_VARPD)

HSP 1 Score: 145 bits (365), Expect = 1.390e-40
Identity = 78/129 (60.47%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWPAGDA 387
            RIGLIPD  A YTLPR+VG+ RA+E+++SARE+ AAEA  LG+ +E+  VDAL+PRA ++A + A ASPLA+ ++K AL  SLG DL  +LDIEA GQ  A  SDYAKE+ RRFAAREPA+F WPA  +
Sbjct:  136 RIGLIPDMAAHYTLPRVVGLQRAKELIFSAREVDAAEALRLGIAMEVLPVDALLPRAQAIAGSFAGASPLAMGVSKRALQGSLGHDLQAVLDIEADGQATASGSDYAKEAVRRFAAREPAQFRWPAASS 264          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: UPI00131E3E4C (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131E3E4C)

HSP 1 Score: 145 bits (365), Expect = 2.140e-40
Identity = 77/125 (61.60%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWP 375
            RIGL+PD GA +TLPR VG+ RA+E+++SAREIGAAEA+ +G+ LE+   DAL+ RA  +A +   A+ +ALSL+K AL++SL SDLAT+LD+EAAGQGIAG+SDY KE+ RRF A+EPA+F WP
Sbjct:  142 RIGLVPDCGAFFTLPRAVGLQRAKELIFSAREIGAAEAQGMGIALEVLPPDALLARAQDMARSFCGANGVALSLSKQALNASLQSDLATVLDMEAAGQGIAGSSDYLKEAARRFVAKEPAQFRWP 266          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A7V8JZ25_9BURK (1,2-epoxyphenylacetyl-CoA isomerase n=4 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7V8JZ25_9BURK)

HSP 1 Score: 144 bits (363), Expect = 2.700e-40
Identity = 75/125 (60.00%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWP 375
            RIGL+PD GA YTLPR+VG+ RA+E+++SAREI A EA  LGL +E+   +AL  RA ++A + A ASP+A+S+ K AL +SLGSDL T+L+IE++GQ +A  SDYAKE+ RRFAAREPA+F WP
Sbjct:  136 RIGLVPDMGAFYTLPRVVGLQRAKELIFSAREIDATEALHLGLAMEVVPAEALAARAQAIARSFAGASPVAMSIAKRALQASLGSDLQTLLEIESSGQALASNSDYAKEAVRRFAAREPAQFRWP 260          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A0Q7LRU4_9BURK (Enoyl-CoA hydratase n=1 Tax=Variovorax sp. Root473 TaxID=1736541 RepID=A0A0Q7LRU4_9BURK)

HSP 1 Score: 144 bits (362), Expect = 4.690e-40
Identity = 79/126 (62.70%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWPA 378
            RIGL+PD GA YTLPR+VG+ RA+E++YSARE GA EA  + L LE+   + L+ RAL +A +L  ASPLALSL+K AL +SL SDL TMLD+EA GQ +AG SDYA+ES RRFA+REPA+F W A
Sbjct:  137 RIGLVPDVGAWYTLPRVVGLQRAKELVYSAREFGAHEALRMNLALEVHAPEQLLARALEIAHSLEGASPLALSLSKQALHASLQSDLTTMLDMEATGQAMAGASDYARESIRRFASREPAQFRWAA 262          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A1H7ESP0_9BURK (2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1H7ESP0_9BURK)

HSP 1 Score: 143 bits (360), Expect = 7.820e-40
Identity = 76/129 (58.91%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWPAGDA 387
            RIGLIPD  A YTLPR+VG+ RA+E+++SARE+ AAEA  LG+ +E+  V AL+PRA ++A + A ASP+A+ L+K AL  SL +DL T+LD+EA GQ +A  SDYAKE+ RRFAAREPA+F WPA  +
Sbjct:  136 RIGLIPDMAAHYTLPRVVGLQRAKELIFSAREVDAAEALRLGIAMEVLPVQALLPRAQAIARSFAGASPVAMGLSKRALRDSLANDLQTLLDVEADGQALASGSDYAKEAVRRFAAREPAQFRWPAASS 264          
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Match: A0A3A4RCJ9_9BURK (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A3A4RCJ9_9BURK)

HSP 1 Score: 140 bits (354), Expect = 7.630e-39
Identity = 77/125 (61.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:    1 RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEVDALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGIAGTSDYAKESFRRFAAREPARFVWP 375
            RIGL+PD G+ YTLPR+VG+ RA+E++YSARE GAAEA  +GL LEI     L+PRA+ +A +   A   A+SL+K AL +SL SDL TMLD+EA  Q IAG SDYA+ES RRFAAREPA+F WP
Sbjct:  137 RIGLVPDIGSWYTLPRVVGLQRAKELVYSAREFGAAEALQMGLALEILPSAELLPRAMEMARSFEGAPATAMSLSKQALQASLQSDLNTMLDMEATAQAIAGGSDYARESVRRFAAREPAQFRWP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P1VJS0_9BURK4.230e-4564.12Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
UPI0019CB30911.040e-4367.23Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A519ZAI2_9BURK6.820e-4262.40Enoyl-CoA hydratase/isomerase family protein (Frag... [more]
A0A1Y2R419_9BURK4.730e-4162.40Enoyl-CoA hydratase n=1 Tax=Hydrogenophaga sp. IBV... [more]
A0A679JLW3_VARPD1.390e-4060.47Short-chain-enoyl-CoA hydratase n=1 Tax=Variovorax... [more]
UPI00131E3E4C2.140e-4061.60enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A7V8JZ25_9BURK2.700e-4060.001,2-epoxyphenylacetyl-CoA isomerase n=4 Tax=unclas... [more]
A0A0Q7LRU4_9BURK4.690e-4062.70Enoyl-CoA hydratase n=1 Tax=Variovorax sp. Root473... [more]
A0A1H7ESP0_9BURK7.820e-4058.912-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomeras... [more]
A0A3A4RCJ9_9BURK7.630e-3961.60Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57279contigP-wetherbeei_contig57279:1..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog381666.H16_B0419
PFAMsECH_1
Model size402
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00004,RC00326,RC02689,RC03003
KEGG koko:K15866
KEGG ReactionR09837,R09839
KEGG Pathwayko00360,ko01120,map00360,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.96e-37
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2W1W1@28216|Betaproteobacteria,1KHVV@119060|Burkholderiaceae
EC5.3.3.18
DescriptionEnoyl-CoA hydratase/isomerase
Cds size402
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.6411505-CDS-P-wetherbeei_contig57279:0..4021683186849.6411505-CDS-P-wetherbeei_contig57279:0..402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57279 1..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57279.1.1prot_P-wetherbeei_contig57279.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57279 1..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57279.1.1

>prot_P-wetherbeei_contig57279.1.1 ID=prot_P-wetherbeei_contig57279.1.1|Name=mRNA_P-wetherbeei_contig57279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
RIGLIPDYGALYTLPRIVGIARAREIMYSAREIGAAEARDLGLVLEIAEV
DALMPRALSLAAALATASPLALSLTKSALDSSLGSDLATMLDIEAAGQGI
AGTSDYAKESFRRFAAREPARFVWPAGDAGSSK*
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mRNA from alignment at P-wetherbeei_contig57279:1..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57279.1.1 ID=mRNA_P-wetherbeei_contig57279.1.1|Name=mRNA_P-wetherbeei_contig57279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57279:1..402+ (Phaeothamnion wetherbeei SAG_119_79)
CGCATCGGCCTGATCCCCGACTACGGCGCGCTCTATACGCTGCCGCGCAT CGTCGGCATCGCGCGCGCCAGGGAGATCATGTACTCGGCGCGCGAAATCG GCGCTGCGGAGGCACGCGACCTCGGGCTGGTGCTCGAAATCGCCGAGGTC GACGCGCTGATGCCGCGCGCGTTATCCCTCGCGGCGGCGTTGGCTACGGC CTCGCCGCTGGCCTTGTCACTCACCAAGAGCGCACTCGACAGTTCCCTGG GCAGCGACCTGGCGACCATGCTGGATATCGAGGCGGCAGGCCAGGGCATC GCCGGCACGAGCGACTACGCGAAGGAATCATTCCGCCGCTTTGCGGCGCG CGAACCGGCGCGCTTTGTGTGGCCGGCGGGCGACGCCGGCAGCAGCAAAT AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57279:1..402+

>mRNA_P-wetherbeei_contig57279.1.1 ID=mRNA_P-wetherbeei_contig57279.1.1|Name=mRNA_P-wetherbeei_contig57279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57279:1..402+ (Phaeothamnion wetherbeei SAG_119_79)
CGCATCGGCCTGATCCCCGACTACGGCGCGCTCTATACGCTGCCGCGCAT
CGTCGGCATCGCGCGCGCCAGGGAGATCATGTACTCGGCGCGCGAAATCG
GCGCTGCGGAGGCACGCGACCTCGGGCTGGTGCTCGAAATCGCCGAGGTC
GACGCGCTGATGCCGCGCGCGTTATCCCTCGCGGCGGCGTTGGCTACGGC
CTCGCCGCTGGCCTTGTCACTCACCAAGAGCGCACTCGACAGTTCCCTGG
GCAGCGACCTGGCGACCATGCTGGATATCGAGGCGGCAGGCCAGGGCATC
GCCGGCACGAGCGACTACGCGAAGGAATCATTCCGCCGCTTTGCGGCGCG
CGAACCGGCGCGCTTTGTGTGGCCGGCGGGCGACGCCGGCAGCAGCAAAT
AG
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