mRNA_P-wetherbeei_contig57277.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57277.1.1
Unique NamemRNA_P-wetherbeei_contig57277.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI00198AE404 (MFS transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00198AE404)

HSP 1 Score: 269 bits (687), Expect = 3.680e-86
Identity = 141/170 (82.94%), Postives = 153/170 (90.00%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALL+DA+LLL+SAAILRGI        RAD HFWRDLRAGVRFVA+HRLLVALA AVG WQMCHNAA+VVQILFATRTLGLSEQAVGLSYMGMG G+I+ASV+G+R+SRRIGPGPCLVLGFAVCGAGWLLLAVAPAN WGVAAF  MLMLFS GAV V+INFLALR
Sbjct:  192 GAPLALLIDAVLLLVSAAILRGIVIFEETRPRADAHFWRDLRAGVRFVAQHRLLVALAAAVGIWQMCHNAAMVVQILFATRTLGLSEQAVGLSYMGMGVGTIVASVFGNRVSRRIGPGPCLVLGFAVCGAGWLLLAVAPANAWGVAAFATMLMLFSTGAVLVFINFLALR 361          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI001ADFD384 (MFS transporter n=1 Tax=Rhizobacter sp. AJA081-3 TaxID=2753607 RepID=UPI001ADFD384)

HSP 1 Score: 254 bits (648), Expect = 2.440e-80
Identity = 132/170 (77.65%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA+LLL+SA ILRGI        R D HFWRDL+ GVRFVAR +LLVALACAVG WQMCH+AA+VVQILFATRTLGLSEQAVGLSYMGMG G+I+ASVYG+RISRRIGPG CL LGFA+CGAGWL+LA APAN WGVAAF  ML++FS GAV V+INFLALR
Sbjct:  191 GAPLALLVDAVLLLVSAGILRGIVVNEERLVRHDAHFWRDLKTGVRFVARQKLLVALACAVGVWQMCHHAAIVVQILFATRTLGLSEQAVGLSYMGMGLGTIVASVYGNRISRRIGPGRCLTLGFAICGAGWLMLAFAPANRWGVAAFALMLLMFSAGAVLVFINFLALR 360          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: A0A0Q6M0Z5_9BURK (MFS transporter n=4 Tax=Rhizobacter TaxID=212743 RepID=A0A0Q6M0Z5_9BURK)

HSP 1 Score: 254 bits (648), Expect = 2.800e-80
Identity = 130/170 (76.47%), Postives = 146/170 (85.88%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA+LLL+SA ILRGI        RAD HFWRDL+AGVRFV   RLL+ALA AVG WQMCH+AA+VVQILFATRTLGLSEQAVGLSYMGMGGG+ILAS+YG+RISRR GPGPCLVLGF +CG GWL+LAVAPAN WG+AAF AML+ FS GAV ++INFL LR
Sbjct:  190 GAPLALLVDAVLLLLSAGILRGIRIIEHRRPRADAHFWRDLQAGVRFVRSQRLLIALAAAVGLWQMCHHAALVVQILFATRTLGLSEQAVGLSYMGMGGGTILASIYGNRISRRYGPGPCLVLGFVICGVGWLVLAVAPANSWGIAAFAAMLLCFSAGAVLIFINFLGLR 359          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI000FDD47AC (MFS transporter n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDD47AC)

HSP 1 Score: 248 bits (633), Expect = 4.510e-78
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA LL++SA ILRGI        R D HFWRDL+AGVRFVAR RLLVALACAVG WQMCH+AA+VVQILFATRTLGLSE  VGLSY+GMG G++LAS++G RISRRIGPGPCL LGFAVCGAGW LLA+APA+ WGV+AF  ML++FS GAV V+INFLALR
Sbjct:  191 GAPLALLVDAALLVVSATILRGIVVDERRAVRHDAHFWRDLKAGVRFVARQRLLVALACAVGVWQMCHHAAIVVQILFATRTLGLSEHQVGLSYVGMGVGTVLASIWGDRISRRIGPGPCLTLGFAVCGAGWCLLALAPADRWGVSAFALMLLMFSAGAVLVFINFLALR 360          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: A0A0L6TCC1_9BURK (MFS transporter n=1 Tax=Methylibium sp. NZG TaxID=1686064 RepID=A0A0L6TCC1_9BURK)

HSP 1 Score: 246 bits (628), Expect = 1.400e-77
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA+LL+ SAAILRGI        R D  FWRDLRAGVRFVA +RLLVALA AVG WQMCH+AA+VVQILFATRTLGLSEQAVGLSYMGMG G++LAS++G+R+SRRIGPGPCLVLGFA+CG GWLLL+ APAN WGVA F  ML+LF+ GAV V+INFLALR
Sbjct:  168 GAPLALLVDAVLLIASAAILRGIVINEERKPRPDARFWRDLRAGVRFVAGNRLLVALAIAVGGWQMCHHAAIVVQILFATRTLGLSEQAVGLSYMGMGVGTVLASLFGNRVSRRIGPGPCLVLGFAICGVGWLLLSFAPANAWGVAVFALMLLLFAAGAVLVFINFLALR 337          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI0019ADCD4D (MFS transporter n=2 Tax=Proteobacteria TaxID=1224 RepID=UPI0019ADCD4D)

HSP 1 Score: 243 bits (619), Expect = 6.030e-76
Identity = 129/170 (75.88%), Postives = 142/170 (83.53%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA++L+ SAAILRGI        R + HF RDL AGVRFV RHRLLVALA  +G WQ+C NAAVVVQILFATRTLGLSEQAVGLSY+GMG G++L+SVYG RISRRIGPGPCL+LGFAVCGAGWLLLA APAN WGVA F  MLMLFS GAV V+INFL LR
Sbjct:  191 GAPLALLVDAVVLIASAAILRGIVIHEEPRARTESHFVRDLWAGVRFVGRHRLLVALAVVMGVWQLCQNAAVVVQILFATRTLGLSEQAVGLSYIGMGAGTVLSSVYGPRISRRIGPGPCLILGFAVCGAGWLLLAFAPANAWGVALFALMLMLFSAGAVLVFINFLGLR 360          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: A0A3N7HMF6_9BURK (MFS transporter n=1 Tax=Albitalea terrae TaxID=2496871 RepID=A0A3N7HMF6_9BURK)

HSP 1 Score: 239 bits (610), Expect = 2.330e-74
Identity = 128/170 (75.29%), Postives = 143/170 (84.12%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA LL+ISA ILRGI         A  HFWRDLRAGV FV R RLLV+LA  VG WQMCH+AA+VVQILFATRTLGLSEQAVGLSYMGMG G+I+ASV G+RISR++GPGPCLV+GFAVC AGWLLLAVAPAN +GVAAF AML+ FS GAV ++INFLALR
Sbjct:  188 GAPLALLVDAGLLIISATILRGIAIHEERKVAAQAHFWRDLRAGVNFVRRQRLLVSLASVVGIWQMCHHAAIVVQILFATRTLGLSEQAVGLSYMGMGLGTIVASVLGNRISRKLGPGPCLVIGFAVCAAGWLLLAVAPANAYGVAAFAAMLLCFSAGAVLIFINFLALR 357          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI001AD30642 (Uncharacterized protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001AD30642)

HSP 1 Score: 236 bits (601), Expect = 2.530e-73
Identity = 125/170 (73.53%), Postives = 142/170 (83.53%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALLVDA LLL+SA+ILRG+         A   FW DLRAGVRFV   RLLV+LA AVG WQMCH+AA+VVQILFATRTLGLSEQAVGLSYMGMG G+I+ASV G+RISRR GPGPCLV+GFAVC AGWLLLAVAPAN +G+AAF  ML+LFS GAV ++INFLA+R
Sbjct:  185 GAPLALLVDACLLLVSASILRGVTVHEEPQRAAGARFWLDLRAGVRFVRSQRLLVSLAVAVGIWQMCHHAAIVVQILFATRTLGLSEQAVGLSYMGMGVGTIIASVLGNRISRRFGPGPCLVIGFAVCAAGWLLLAVAPANAYGIAAFALMLLLFSAGAVLIFINFLAMR 354          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: A0A0Q7AWF5_9BURK (MFS transporter n=1 Tax=Rhizobacter sp. Root404 TaxID=1736528 RepID=A0A0Q7AWF5_9BURK)

HSP 1 Score: 231 bits (590), Expect = 1.160e-71
Identity = 125/154 (81.17%), Postives = 130/154 (84.42%), Query Frame = 1
Query:   49 AAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            AAILRGI        RAD HF RDLRAGVRFV RHRLLVALA AVG WQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMG G+ILASV G R+S R+GPGPCLVLGFAVCGAGWLLLAVAP   +GVAAF  MLMLFS GAV V+INFLALR
Sbjct:  201 AAILRGIVVVEDLRPRADAHFMRDLRAGVRFVLRHRLLVALALAVGVWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGVGTILASVVGRRVSARVGPGPCLVLGFAVCGAGWLLLAVAPVGPFGVAAFALMLMLFSTGAVLVFINFLALR 354          
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Match: UPI00164C7404 (MFS transporter n=1 Tax=Undibacterium hunanense TaxID=2762292 RepID=UPI00164C7404)

HSP 1 Score: 230 bits (586), Expect = 2.660e-71
Identity = 123/170 (72.35%), Postives = 137/170 (80.59%), Query Frame = 1
Query:    1 GAPVALLVDALLLLISAAILRGIXXXXXXXXRADEHFWRDLRAGVRFVARHRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGGSILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVAMLMLFSIGAVFVYINFLALR 510
            GAP+ALL DALLLL SA ILRGI        R D HFWRDL+AG+ FV    LL+ALA  VG WQ+C+NAA+VVQILFATR LGLSEQAVGLSYMGMG G+I+ASVYG RISRRIGPGPC+VLG AVCG GW LLA+APAN WG+AAF  MLM FSIG V ++INFLALR
Sbjct:  178 GAPLALLADALLLLTSAVILRGIHINEVRMPREDAHFWRDLKAGLSFVTNKPLLIALAMTVGGWQLCYNAALVVQILFATRELGLSEQAVGLSYMGMGIGTIIASVYGYRISRRIGPGPCMVLGVAVCGVGWGLLALAPANNWGIAAFGFMLMCFSIGGVLIFINFLALR 347          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198AE4043.680e-8682.94MFS transporter n=1 Tax=Hyphomicrobiales bacterium... [more]
UPI001ADFD3842.440e-8077.65MFS transporter n=1 Tax=Rhizobacter sp. AJA081-3 T... [more]
A0A0Q6M0Z5_9BURK2.800e-8076.47MFS transporter n=4 Tax=Rhizobacter TaxID=212743 R... [more]
UPI000FDD47AC4.510e-7875.29MFS transporter n=1 Tax=Piscinibacter defluvii Tax... [more]
A0A0L6TCC1_9BURK1.400e-7775.88MFS transporter n=1 Tax=Methylibium sp. NZG TaxID=... [more]
UPI0019ADCD4D6.030e-7675.88MFS transporter n=2 Tax=Proteobacteria TaxID=1224 ... [more]
A0A3N7HMF6_9BURK2.330e-7475.29MFS transporter n=1 Tax=Albitalea terrae TaxID=249... [more]
UPI001AD306422.530e-7373.53Uncharacterized protein n=1 Tax=Burkholderiaceae b... [more]
A0A0Q7AWF5_9BURK1.160e-7181.17MFS transporter n=1 Tax=Rhizobacter sp. Root404 Ta... [more]
UPI00164C74042.660e-7172.35MFS transporter n=1 Tax=Undibacterium hunanense Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57277contigP-wetherbeei_contig57277:3..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog983917.RGE_10580
PFAMsMFS_1
Model size510
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.31e-67
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1R3YS@1224|Proteobacteria,2VQBS@28216|Betaproteobacteria,1KNDV@119065|unclassified Burkholderiales
DescriptionTransmembrane secretion effector
Cds size510
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.6128867-CDS-P-wetherbeei_contig57277:2..5121683186849.6128867-CDS-P-wetherbeei_contig57277:2..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57277 3..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57277.1.1prot_P-wetherbeei_contig57277.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57277 3..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57277.1.1

>prot_P-wetherbeei_contig57277.1.1 ID=prot_P-wetherbeei_contig57277.1.1|Name=mRNA_P-wetherbeei_contig57277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
GAPVALLVDALLLLISAAILRGIIVNEERRRRADEHFWRDLRAGVRFVAR
HRLLVALACAVGCWQMCHNAAVVVQILFATRTLGLSEQAVGLSYMGMGGG
SILASVYGSRISRRIGPGPCLVLGFAVCGAGWLLLAVAPANEWGVAAFVA
MLMLFSIGAVFVYINFLALR
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mRNA from alignment at P-wetherbeei_contig57277:3..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57277.1.1 ID=mRNA_P-wetherbeei_contig57277.1.1|Name=mRNA_P-wetherbeei_contig57277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57277:3..512- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGCCGGTGGCGTTGCTCGTCGACGCGCTGCTGCTGTTGATCTCGGC CGCGATCCTGCGCGGCATCATCGTCAACGAAGAGCGCCGGCGCCGCGCCG ACGAACACTTCTGGCGCGACCTGCGTGCCGGCGTGCGCTTCGTGGCGAGG CACCGTCTGCTGGTGGCGCTGGCCTGCGCCGTGGGCTGCTGGCAGATGTG CCACAACGCGGCCGTGGTCGTGCAGATCCTGTTCGCCACGCGCACGCTCG GCCTGTCGGAGCAGGCGGTCGGGCTGAGCTACATGGGCATGGGTGGCGGC AGCATCCTTGCCAGCGTGTACGGCAGCCGCATCAGCCGGCGCATCGGGCC GGGGCCCTGCCTGGTGCTCGGTTTTGCGGTGTGCGGTGCCGGCTGGCTGC TGCTGGCGGTGGCACCTGCGAACGAATGGGGCGTGGCGGCGTTCGTCGCG ATGCTGATGCTGTTTTCGATCGGCGCGGTGTTCGTCTACATCAACTTCCT CGCGCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57277:3..512-

>mRNA_P-wetherbeei_contig57277.1.1 ID=mRNA_P-wetherbeei_contig57277.1.1|Name=mRNA_P-wetherbeei_contig57277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57277:3..512- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGCCGGTGGCGTTGCTCGTCGACGCGCTGCTGCTGTTGATCTCGGC
CGCGATCCTGCGCGGCATCATCGTCAACGAAGAGCGCCGGCGCCGCGCCG
ACGAACACTTCTGGCGCGACCTGCGTGCCGGCGTGCGCTTCGTGGCGAGG
CACCGTCTGCTGGTGGCGCTGGCCTGCGCCGTGGGCTGCTGGCAGATGTG
CCACAACGCGGCCGTGGTCGTGCAGATCCTGTTCGCCACGCGCACGCTCG
GCCTGTCGGAGCAGGCGGTCGGGCTGAGCTACATGGGCATGGGTGGCGGC
AGCATCCTTGCCAGCGTGTACGGCAGCCGCATCAGCCGGCGCATCGGGCC
GGGGCCCTGCCTGGTGCTCGGTTTTGCGGTGTGCGGTGCCGGCTGGCTGC
TGCTGGCGGTGGCACCTGCGAACGAATGGGGCGTGGCGGCGTTCGTCGCG
ATGCTGATGCTGTTTTCGATCGGCGCGGTGTTCGTCTACATCAACTTCCT
CGCGCTGCGC
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