mRNA_P-wetherbeei_contig57267.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57267.1.1
Unique NamemRNA_P-wetherbeei_contig57267.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57267.1.1 vs. uniprot
Match: A0A3C2AZU4_9ACTN (Guanylate cyclase domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZU4_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 3.060e-21
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 SLDLLACELDAQSRIDKLAAEYADRHADTAGTWALQVGVLAKQTGNFGDLAATLQVMIAESTVPGNWTAAYGLAQLENGDREGAAVTLDGCPVPPLDYLWMSTQVVIAELAAGLGRHDRCVRLMDELLPFR 393
            ++ +L  E   Q+R+D L   +     D  GTW +Q  VLA Q G  GDL  +LQ M         W A   +A   +GD +GAA  LD     P +Y W++ Q  +AE+A GLGRHD C  + D+LLPFR
Sbjct:  846 TIAILRSEGGVQARVDALFQRFGQSLTDAEGTWMIQTAVLAYQAGVLGDLVGSLQSMTTGPQAR-MWAAGLAVALWWSGDEQGAAEVLDRPDDLPRNYFWLAVQQALAEVAVGLGRHDHCRTIFDDLLPFR 975
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C2AZU4_9ACTN3.060e-2139.69Guanylate cyclase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57267contigP-wetherbeei_contig57267:1..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.4123137-CDS-P-wetherbeei_contig57267:0..3931683186849.4123137-CDS-P-wetherbeei_contig57267:0..393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57267 1..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57267.1.1prot_P-wetherbeei_contig57267.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57267 1..393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57267.1.1

>prot_P-wetherbeei_contig57267.1.1 ID=prot_P-wetherbeei_contig57267.1.1|Name=mRNA_P-wetherbeei_contig57267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
SLDLLACELDAQSRIDKLAAEYADRHADTAGTWALQVGVLAKQTGNFGDL
AATLQVMIAESTVPGNWTAAYGLAQLENGDREGAAVTLDGCPVPPLDYLW
MSTQVVIAELAAGLGRHDRCVRLMDELLPFR
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mRNA from alignment at P-wetherbeei_contig57267:1..393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57267.1.1 ID=mRNA_P-wetherbeei_contig57267.1.1|Name=mRNA_P-wetherbeei_contig57267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig57267:1..393- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGGACCTCCTCGCCTGCGAGCTCGACGCGCAATCGAGGATCGACAA
GCTCGCCGCCGAGTACGCCGATCGACACGCGGACACGGCGGGCACATGGG
CCCTCCAGGTCGGTGTCCTTGCCAAGCAGACCGGCAACTTCGGCGACCTC
GCCGCGACGCTGCAGGTGATGATCGCCGAGTCGACGGTGCCGGGGAACTG
GACCGCCGCGTATGGCCTGGCGCAGCTGGAGAACGGTGACCGGGAGGGTG
CTGCTGTCACGCTCGACGGCTGTCCTGTGCCGCCGCTCGACTACCTCTGG
ATGAGCACGCAGGTGGTCATCGCCGAACTGGCGGCCGGGCTCGGTCGTCA
CGATCGGTGCGTGCGGCTGATGGACGAGCTGCTGCCGTTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57267:1..393-

>mRNA_P-wetherbeei_contig57267.1.1 ID=mRNA_P-wetherbeei_contig57267.1.1|Name=mRNA_P-wetherbeei_contig57267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig57267:1..393- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGGACCTCCTCGCCTGCGAGCTCGACGCGCAATCGAGGATCGACAA
GCTCGCCGCCGAGTACGCCGATCGACACGCGGACACGGCGGGCACATGGG
CCCTCCAGGTCGGTGTCCTTGCCAAGCAGACCGGCAACTTCGGCGACCTC
GCCGCGACGCTGCAGGTGATGATCGCCGAGTCGACGGTGCCGGGGAACTG
GACCGCCGCGTATGGCCTGGCGCAGCTGGAGAACGGTGACCGGGAGGGTG
CTGCTGTCACGCTCGACGGCTGTCCTGTGCCGCCGCTCGACTACCTCTGG
ATGAGCACGCAGGTGGTCATCGCCGAACTGGCGGCCGGGCTCGGTCGTCA
CGATCGGTGCGTGCGGCTGATGGACGAGCTGCTGCCGTTCCGG
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