mRNA_P-wetherbeei_contig57238.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57238.1.1
Unique NamemRNA_P-wetherbeei_contig57238.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57238.1.1 vs. uniprot
Match: UPI001C3D9667 (PAS domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D9667)

HSP 1 Score: 77.0 bits (188), Expect = 6.280e-17
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 VPVFLCPRCAYRESSSERNVRHQPRGCSRCGFGF 102
            +PVFLCPRCAYRES SERNVRHQPRGCSRCGFGF
Sbjct:    1 MPVFLCPRCAYRESGSERNVRHQPRGCSRCGFGF 34
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BLAST of mRNA_P-wetherbeei_contig57238.1.1 vs. uniprot
Match: UPI001C3CF091 (PAS domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3CF091)

HSP 1 Score: 75.1 bits (183), Expect = 3.560e-16
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 VPVFLCPRCAYRESSSERNVRHQPRGCSRCGFGF 102
            +PVFLCPRCAYRE  SERNVRHQPRGCSRCGFGF
Sbjct:    1 MPVFLCPRCAYRERGSERNVRHQPRGCSRCGFGF 34
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BLAST of mRNA_P-wetherbeei_contig57238.1.1 vs. uniprot
Match: A0A7V9KCP0_9ACTN (PAS domain-containing protein n=2 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9KCP0_9ACTN)

HSP 1 Score: 47.4 bits (111), Expect = 1.910e-5
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 VFLCPRCAYRESSSERNV--RHQPRGCSRCGFGF 102
            +F+CP C +R + ++R    R+QP+GCS+CGFGF
Sbjct:    4 LFICPNCGHRSTQTDRTAGFRNQPKGCSKCGFGF 37
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001C3D96676.280e-1794.12PAS domain-containing protein n=1 Tax=Miltoncostae... [more]
UPI001C3CF0913.560e-1691.18PAS domain-containing protein n=1 Tax=Miltoncostae... [more]
A0A7V9KCP0_9ACTN1.910e-550.00PAS domain-containing protein n=2 Tax=Solirubrobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57238contigP-wetherbeei_contig57238:1..102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380390.JIAT01000010_gene4891
Model size102
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.22e-05
EggNOG OGsCOG3829@1|root,COG3829@2|Bacteria,2HQG0@201174|Actinobacteria,4CS14@84995|Rubrobacteria
DescriptionPAS domain
Cds size102
COG categoryKT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.142192-CDS-P-wetherbeei_contig57238:0..1021683186849.142192-CDS-P-wetherbeei_contig57238:0..102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57238 1..102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57238.1.1prot_P-wetherbeei_contig57238.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57238 1..102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57238.1.1

>prot_P-wetherbeei_contig57238.1.1 ID=prot_P-wetherbeei_contig57238.1.1|Name=mRNA_P-wetherbeei_contig57238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
VPVFLCPRCAYRESSSERNVRHQPRGCSRCGFGF
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mRNA from alignment at P-wetherbeei_contig57238:1..102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57238.1.1 ID=mRNA_P-wetherbeei_contig57238.1.1|Name=mRNA_P-wetherbeei_contig57238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig57238:1..102- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCGTCTTCCTCTGTCCGCGCTGCGCCTACCGCGAGAGCAGCAGCGA
ACGCAACGTGCGCCATCAGCCGCGCGGGTGCTCGCGTTGCGGATTCGGCT
TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57238:1..102-

>mRNA_P-wetherbeei_contig57238.1.1 ID=mRNA_P-wetherbeei_contig57238.1.1|Name=mRNA_P-wetherbeei_contig57238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig57238:1..102- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCGTCTTCCTCTGTCCGCGCTGCGCCTACCGCGAGAGCAGCAGCGA
ACGCAACGTGCGCCATCAGCCGCGCGGGTGCTCGCGTTGCGGATTCGGCT
TC
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