mRNA_P-wetherbeei_contig572.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig572.3.1
Unique NamemRNA_P-wetherbeei_contig572.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig572.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig572contigP-wetherbeei_contig572:8126..9524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA18655
PFAMsF-box,F-box-like,LRR_6
Model size1061
Max annot lvl2759|Eukaryota
KEGG koko:K10314
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
Evalue1.88e-16
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-06_010970.1
DescriptionF-box LRR-repeat protein
Cds size561
COG categoryB
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.8466132-UTR-P-wetherbeei_contig572:8125..84141683186848.8466132-UTR-P-wetherbeei_contig572:8125..8414Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig572 8126..8414 +
1683186848.8918896-UTR-P-wetherbeei_contig572:9313..95241683186848.8918896-UTR-P-wetherbeei_contig572:9313..9524Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig572 9314..9524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.8633447-CDS-P-wetherbeei_contig572:8414..86161683186848.8633447-CDS-P-wetherbeei_contig572:8414..8616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig572 8415..8616 +
1683186848.875948-CDS-P-wetherbeei_contig572:8954..93131683186848.875948-CDS-P-wetherbeei_contig572:8954..9313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig572 8955..9313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig572.3.1prot_P-wetherbeei_contig572.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig572 8415..9313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig572.3.1

>prot_P-wetherbeei_contig572.3.1 ID=prot_P-wetherbeei_contig572.3.1|Name=mRNA_P-wetherbeei_contig572.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MVRHGTRLRAVDLGGCFNMSLKGVMDLITRHPNRENFDALQLPGLPLTHE
FTAALPANCPNITSLGIGYNQLELLLLEQLLNPLARQLRALRVHWCVTVR
DNMLLWIGQSCPRLRFLDVCGCKFVTINGVGTMLQAKQVGWLWEGKRGWS
GFDEGGEVQLGIRTEVSWLQYFFRAAVQSHHPRLDR*
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mRNA from alignment at P-wetherbeei_contig572:8126..9524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig572.3.1 ID=mRNA_P-wetherbeei_contig572.3.1|Name=mRNA_P-wetherbeei_contig572.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1399bp|location=Sequence derived from alignment at P-wetherbeei_contig572:8126..9524+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCCAGATCATCGACGGCGGCGGCCGCTCTCTCCCCGGCTCGATCCCCA
TCCCGCCCAACTTCCTCGATGACTCATTCGCCGCCCTGTCGCTGGCGGGC
TCCAAAATCGACACCTCCTACGTCGCCGACGTCGTCTGCAAGGCGTGCCC
GTCGCTACGCCGTGTCGACCTGTCCGGCGCATCCTTCATCTCGGACGAGA
CGGTCCGTGTCCTCGTCAGCGGCTGTCGGCAGATCGAGGAGCTCCGGCTG
GAAGCGTGCCGGAAGCTGACCGACGACGCCGTCCGCCACATGGTCCGCCA
TGGCACGCGGCTGCGTGCGGTTGACCTTGGCGGCTGCTTCAACATGTCGC
TAAAGGGCGTCATGGATCTCATCACGCGGCATCCGAACCGGGAAAATTTT
GACGCGCTGCAGCTGCCGGGGCTGCCGCTGACGCACGAGTTCACCGCCGC
GCTGCCAGCAAACTGCCCCAACATCACATCTCTCGGCATTGGTCTGTGGG
GGTTGTTTCCTTCTTTTTGTGGGCTGGACATCCTTCTTGTCTTCCTGGTG
CTGTGATAACCGGCGGGGTTTTGAACTTGCATCGGGTTGAATTGGTTTAT
CCCTTTCATTTCCAAGAAAGCTTGCCCGAAATCTTTCACGTTTGAGCGAA
ACATAGCGTTCGAACTGGGAGCATCAAATTTCGAAGGAAAGGCGCCGAGT
TGTTGCCGTTTCATTCTTTCCCTGCGGCCTCTCCGCCTGCTCTGGTCTTG
TTGGTATCGCCGCCTTCCGTCGACCCTCCCTGCCGGCCGGCTTGTCTGGC
CTGTCGGATGGCCTGCGCCGCCGCCTCAGGCTACAACCAGCTGGAGCTGC
TTCTTCTAGAACAGCTGCTAAACCCGCTGGCGCGGCAGCTGCGGGCGCTA
CGCGTCCACTGGTGCGTGACCGTGCGTGACAACATGCTGCTGTGGATCGG
GCAGAGCTGCCCGCGGCTGCGGTTTCTTGACGTATGCGGCTGCAAGTTCG
TGACCATCAACGGCGTCGGCACCATGCTGCAAGCCAAGCAGGTAGGGTGG
CTGTGGGAGGGGAAAAGAGGATGGAGCGGGTTCGATGAGGGAGGTGAAGT
GCAGTTGGGGATACGCACGGAAGTTAGCTGGTTGCAATACTTCTTTCGGG
CTGCTGTGCAAAGCCATCATCCGAGACTTGACCGTTAGAAAATTGGCCGC
AGTTGTTTCTCTCCTTGGTGGATTTATCATTCCACCCGTTGCCCTCCCTC
CTGCCGTTTCCTTTCTTTCTTCTTGCTCTTTTTCCTACTCCTCCTCCGGC
CTCCAATCATTAGCAATGCCATGAAGTGCGACCCGAGGAGTTCGACCTGT
TCTCGCGGATCGTGCTGACCTACACGGCGGTCCCGAAGCCCCTCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig572:8126..9524+

>mRNA_P-wetherbeei_contig572.3.1 ID=mRNA_P-wetherbeei_contig572.3.1|Name=mRNA_P-wetherbeei_contig572.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig572:8126..9524+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCGCCATGGCACGCGGCTGCGTGCGGTTGACCTTGGCGGCTGCTT
CAACATGTCGCTAAAGGGCGTCATGGATCTCATCACGCGGCATCCGAACC
GGGAAAATTTTGACGCGCTGCAGCTGCCGGGGCTGCCGCTGACGCACGAG
TTCACCGCCGCGCTGCCAGCAAACTGCCCCAACATCACATCTCTCGGCAT
TGGCTACAACCAGCTGGAGCTGCTTCTTCTAGAACAGCTGCTAAACCCGC
TGGCGCGGCAGCTGCGGGCGCTACGCGTCCACTGGTGCGTGACCGTGCGT
GACAACATGCTGCTGTGGATCGGGCAGAGCTGCCCGCGGCTGCGGTTTCT
TGACGTATGCGGCTGCAAGTTCGTGACCATCAACGGCGTCGGCACCATGC
TGCAAGCCAAGCAGGTAGGGTGGCTGTGGGAGGGGAAAAGAGGATGGAGC
GGGTTCGATGAGGGAGGTGAAGTGCAGTTGGGGATACGCACGGAAGTTAG
CTGGTTGCAATACTTCTTTCGGGCTGCTGTGCAAAGCCATCATCCGAGAC
TTGACCGTTAG
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