mRNA_P-wetherbeei_contig572.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig572.2.1
Unique NamemRNA_P-wetherbeei_contig572.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.080e-43
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KGPWTKEEDD IM    SGVTKW+EIA  +PGR+GKQCRERW NHLDP++KK  W  EEDRILV  Q++LGN W  IA +LPGRSEN+VKNRWNSA RRK
Sbjct:   45 KGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRRK 144
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A7S2SKE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SKE3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.110e-43
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:   10 WTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            WTKEEDD IM    SGVTKW+EIA  +PGR+GKQCRERW NHLDP++KK  W  EEDRILV  Q++LGN W  IA +LPGRSEN+VKNRWNSA RRK
Sbjct:    1 WTKEEDDTIMDAIKSGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWSEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRRK 97
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A7S2RZ51_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ51_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.560e-42
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KGPWTKEED II+    +G+TKW+EIA  +PGR+GKQCRERW NHLDP++KK  W  EED +LV AQ + GN+WT+IA LLPGRSEN+VKNRWNSATRR+
Sbjct:  308 KGPWTKEEDQIIIDCIEAGITKWSEIAERIPGRIGKQCRERWFNHLDPSLKKGGWTEEEDAVLVEAQSKWGNSWTKIAKLLPGRSENAVKNRWNSATRRR 407
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO)

HSP 1 Score: 151 bits (381), Expect = 5.360e-42
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KGPWT EED +I++  ++G+TKW+EI+  +PGR+GKQCRERW NHLDP++KK  W  EEDRIL  AQ  +GN W  IA LLPGRSENSVKNRWNSA RRK
Sbjct:   62 KGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRRK 161
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A7S4DB75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB75_HETAK)

HSP 1 Score: 144 bits (363), Expect = 1.100e-40
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KG WTKEED +I++   SG+ KW++IA  +PGR+GKQ RERW NHLDP++KK  W PEED +L  AQ R GNAWT+IA LLPGRS+NS+KN WNS+T R+
Sbjct:  133 KGAWTKEEDAVIVACMESGIKKWSKIAERIPGRIGKQVRERWFNHLDPHLKKGGWSPEEDAVLAEAQARWGNAWTKIARLLPGRSDNSIKNHWNSSTVRR 232
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.440e-40
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSL---YSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KGPWT+EED I+  +   Y +G  KW+ IA  + GR+GKQCRERW NHLDPN+ K  W PEEDRI+  AQ + GN W+ IA LLPGR+ENSVKNRWNS+ R+K
Sbjct:   59 KGPWTEEEDGIVRDMVLMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSARKK 161
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: F0Y4D5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D5_AURAN)

HSP 1 Score: 139 bits (349), Expect = 1.640e-40
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSA 288
            KG +T+EED II+     G  +W +IA  +PGR+GKQCRERW NHLDPN+KK  W  EED ILV AQQR GNAWT+IA LLPGR+E++VKNRWNSA
Sbjct:   20 KGAFTEEEDKIIIECMREGGLRWMQIAERIPGRIGKQCRERWTNHLDPNLKKGGWTREEDAILVEAQQRFGNAWTKIAELLPGRAESAVKNRWNSA 115
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A6H5KUQ8_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.270e-40
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK 300
            KGPWT EED II+   +  +T+W+EIA  V GR+GKQCRERW NHLDP +KK++W PEED ILV  Q R GN+WT+IA LLPGRSEN+VKNRWNSA R+K
Sbjct:  200 KGPWTTEEDQIIIDCINEKMTRWSEIAERVEGRVGKQCRERWFNHLDPTLKKSSWTPEEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK 299
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: W7TBR6_9STRA (Myb-related 3r-1-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBR6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 5.860e-40
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSA 288
            KGPW +EED +I+    SG+TKW+EIA  +PGRLGKQCRERW+NHLDP+V K+AW  EED+ L+A Q R GNAW +IA LLPGRSENSVKNRWNSA
Sbjct:  184 KGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSA 279
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BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Match: A0A7S2SVF3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.550e-39
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNVKKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRR 297
            KG WTKEED II+    +G+ +W+EIA  +PGR+GKQ RERW NHLDP +KK +W  EED IL  AQ R GN+WT+IA LLPGR+EN++KNRWNSA+RR
Sbjct:   92 KGTWTKEEDQIIIDCIEAGINRWSEIAEYIPGRVGKQARERWFNHLDPTIKKGSWTDEEDAILTVAQARWGNSWTKIARLLPGRAENTIKNRWNSASRR 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig572.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GBT4_9STRA1.080e-4372.00Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A7S2SKE3_9STRA4.110e-4371.13Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2RZ51_9STRA1.560e-4269.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A5A8DBZ9_CAFRO5.360e-4267.00Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S4DB75_HETAK1.100e-4063.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2BQG7_9STRA1.440e-4061.17Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0Y4D5_AURAN1.640e-4065.63Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6H5KUQ8_9PHAE2.270e-4067.00MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
W7TBR6_9STRA5.860e-4069.79Myb-related 3r-1-like protein n=2 Tax=Monodopsidac... [more]
A0A7S2SVF3_9STRA3.550e-3963.64Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig572contigP-wetherbeei_contig572:2208..2507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035212.1
PFAMsMyb_DNA-binding
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.69e-41
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size300
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.8073487-CDS-P-wetherbeei_contig572:2207..25071683186848.8073487-CDS-P-wetherbeei_contig572:2207..2507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig572 2208..2507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig572.2.1prot_P-wetherbeei_contig572.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig572 2208..2507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig572.2.1

>prot_P-wetherbeei_contig572.2.1 ID=prot_P-wetherbeei_contig572.2.1|Name=mRNA_P-wetherbeei_contig572.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
KGPWTKEEDDIIMSLYSSGVTKWAEIAVSVPGRLGKQCRERWVNHLDPNV
KKTAWQPEEDRILVAAQQRLGNAWTRIAALLPGRSENSVKNRWNSATRRK
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mRNA from alignment at P-wetherbeei_contig572:2208..2507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig572.2.1 ID=mRNA_P-wetherbeei_contig572.2.1|Name=mRNA_P-wetherbeei_contig572.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig572:2208..2507+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGGCCGTGGACGAAGGAAGAGGACGATATCATCATGTCGCTGTACTC
TTCCGGTGTTACCAAGTGGGCCGAGATCGCCGTGAGCGTCCCCGGCCGTC
TTGGTAAACAGTGTAGGGAACGTTGGGTGAATCACTTAGATCCAAACGTC
AAGAAGACGGCGTGGCAGCCGGAGGAGGACCGGATCCTGGTGGCGGCCCA
ACAGCGACTGGGCAATGCCTGGACAAGAATCGCCGCTTTGCTGCCCGGAC
GCAGCGAGAACTCCGTCAAGAACCGCTGGAACTCGGCGACGCGCCGCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig572:2208..2507+

>mRNA_P-wetherbeei_contig572.2.1 ID=mRNA_P-wetherbeei_contig572.2.1|Name=mRNA_P-wetherbeei_contig572.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig572:2208..2507+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGGCCGTGGACGAAGGAAGAGGACGATATCATCATGTCGCTGTACTC
TTCCGGTGTTACCAAGTGGGCCGAGATCGCCGTGAGCGTCCCCGGCCGTC
TTGGTAAACAGTGTAGGGAACGTTGGGTGAATCACTTAGATCCAAACGTC
AAGAAGACGGCGTGGCAGCCGGAGGAGGACCGGATCCTGGTGGCGGCCCA
ACAGCGACTGGGCAATGCCTGGACAAGAATCGCCGCTTTGCTGCCCGGAC
GCAGCGAGAACTCCGTCAAGAACCGCTGGAACTCGGCGACGCGCCGCAAA
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