mRNA_P-wetherbeei_contig572.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig572.1.1
Unique NamemRNA_P-wetherbeei_contig572.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig572.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig572contigP-wetherbeei_contig572:2..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF18
Preferred nameTHOC5
PFAMsFimP
Model size1024
Max annot lvl2759|Eukaryota
KEGG koko:K05291,ko:K13174
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000346,GO:0000347,GO:0000445,GO:0000902,GO:0001701,GO:0001824,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007140,GO:0007275,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017145,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030224,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032239,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035162,GO:0042886,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044766,GO:0045184,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045649,GO:0045650,GO:0045787,GO:0045893,GO:0045935,GO:0046483,GO:0046784,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051301,GO:0051302,GO:0051321,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051836,GO:0060215,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1901976,GO:1901977,GO:1902105,GO:1902106,GO:1902579,GO:1902680,GO:1903046,GO:1903131,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1903827,GO:2000001,GO:2000002,GO:2000026,GO:2000035,GO:2000112,GO:2000197,GO:2001020,GO:2001021,GO:2001141
Exons1
Evalue0.000319
EggNOG OGsKOG2216@1|root,KOG2216@2759|Eukaryota
Descriptionpositive regulation of DNA-templated transcription, elongation
Cds size564
COG categoryE
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.7452853-UTR-P-wetherbeei_contig572:1..1111683186848.7452853-UTR-P-wetherbeei_contig572:1..111Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig572 2..111 +
1683186848.7692714-UTR-P-wetherbeei_contig572:675..10251683186848.7692714-UTR-P-wetherbeei_contig572:675..1025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig572 676..1025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.7590811-CDS-P-wetherbeei_contig572:111..6751683186848.7590811-CDS-P-wetherbeei_contig572:111..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig572 112..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig572.1.1prot_P-wetherbeei_contig572.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig572 112..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig572.1.1

>prot_P-wetherbeei_contig572.1.1 ID=prot_P-wetherbeei_contig572.1.1|Name=mRNA_P-wetherbeei_contig572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MASWEEIQAPRLDWFESPAAAAAAKADGEGEMAMMVDGGEQDAAAAAAMA
GRVRHGCRYFRATVKGAGRGAAMVDAVIEVPAEYPVALPRFRLSQQSSGG
SSSSGDGGRSAEELAALEAALGGRSADQLRTTDVTAWDWLLTHQVWRLHQ
SLSGGGGSKEPTAAATAATLPAAKEVGDALVRKYLRL*
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mRNA from alignment at P-wetherbeei_contig572:2..1025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig572.1.1 ID=mRNA_P-wetherbeei_contig572.1.1|Name=mRNA_P-wetherbeei_contig572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-wetherbeei_contig572:2..1025+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAGCAGTTCCAGGCGTTTGAGGGGCGCACGCTGCCGCTGCCGCGACCG
GCCGCTGCGACGGCCATCGGCGGCGCGGCCGCCATCGCCGCAGCACCGGT
GTCCGGCGCGATGGCGTCTTGGGAGGAGATCCAGGCGCCGAGGCTGGATT
GGTTTGAATCGCCGGCGGCGGCGGCGGCGGCAAAGGCGGATGGCGAAGGC
GAGATGGCGATGATGGTCGACGGCGGCGAGCAGGATGCAGCAGCCGCAGC
GGCGATGGCGGGACGGGTACGGCACGGGTGCCGCTACTTCCGGGCGACGG
TGAAAGGTGCGGGCCGCGGGGCAGCAATGGTCGACGCCGTGATCGAGGTA
CCTGCGGAATATCCGGTGGCTCTGCCGCGCTTCCGGCTGTCGCAGCAGTC
TAGCGGCGGGAGTAGCAGCAGCGGCGACGGCGGGCGCTCCGCGGAGGAGT
TGGCTGCGCTGGAGGCAGCGCTTGGCGGTCGATCGGCGGACCAGCTCCGG
ACGACGGACGTCACTGCGTGGGATTGGCTGCTTACCCACCAGGTGTGGCG
ATTGCACCAGAGCCTCAGCGGCGGCGGCGGCAGCAAGGAACCGACAGCTG
CGGCGACGGCGGCGACTCTGCCGGCGGCAAAGGAGGTGGGCGACGCGCTG
GTGCGAAAGTACCTCAGACTGTGAGCGGAGCTTGCGAGGCAATCGGAGCG
AATGAGGAGTAGGGCGAGCCTGGCAAGAGCTACACGGCCTATGCCTCATC
CAACTTTCTTTGGATGCACCGTGCTTCTCCATACTGGAGCTTCGCTCTTT
CTTTTTTCCATCCCTGATTAGGTCTGTATTGGTTATTGGTTTTGTTATGA
CGAGTTTAGGTGGTGCTGCATCCTAGTATATCCTGGAAGCGTGAGAACGA
AAGCAAATGTGGTGAGCGAAATCTGGGGAATCCCTTTCGCCGTCATCGCC
GCTGCCACTTTTCCATCGTTTGGCACAGGTGCCGCAACCACCACTGCCGC
TGCCGGGGCCAATTTTAACGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig572:2..1025+

>mRNA_P-wetherbeei_contig572.1.1 ID=mRNA_P-wetherbeei_contig572.1.1|Name=mRNA_P-wetherbeei_contig572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig572:2..1025+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCTTGGGAGGAGATCCAGGCGCCGAGGCTGGATTGGTTTGAATC
GCCGGCGGCGGCGGCGGCGGCAAAGGCGGATGGCGAAGGCGAGATGGCGA
TGATGGTCGACGGCGGCGAGCAGGATGCAGCAGCCGCAGCGGCGATGGCG
GGACGGGTACGGCACGGGTGCCGCTACTTCCGGGCGACGGTGAAAGGTGC
GGGCCGCGGGGCAGCAATGGTCGACGCCGTGATCGAGGTACCTGCGGAAT
ATCCGGTGGCTCTGCCGCGCTTCCGGCTGTCGCAGCAGTCTAGCGGCGGG
AGTAGCAGCAGCGGCGACGGCGGGCGCTCCGCGGAGGAGTTGGCTGCGCT
GGAGGCAGCGCTTGGCGGTCGATCGGCGGACCAGCTCCGGACGACGGACG
TCACTGCGTGGGATTGGCTGCTTACCCACCAGGTGTGGCGATTGCACCAG
AGCCTCAGCGGCGGCGGCGGCAGCAAGGAACCGACAGCTGCGGCGACGGC
GGCGACTCTGCCGGCGGCAAAGGAGGTGGGCGACGCGCTGGTGCGAAAGT
ACCTCAGACTGTGA
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