mRNA_P-wetherbeei_contig57168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57168.1.1
Unique NamemRNA_P-wetherbeei_contig57168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A8J3E280_9PROT (NHase_beta domain-containing protein n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E280_9PROT)

HSP 1 Score: 140 bits (352), Expect = 2.470e-40
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  193 VPVRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            +P RF PGD V VR A P GH+RTP+Y RG  GVVERLCGAFANPEELA++RPGLPAQPLYRVRF   +LW DYR    D +EIEIYQH
Sbjct:    9 IPARFKPGDRVTVREAYPLGHLRTPFYARGATGVVERLCGAFANPEELAFNRPGLPAQPLYRVRFRQAELWADYRGPARDTIEIEIYQH 97          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A2E5KL52_9PROT (Nitrile hydratase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KL52_9PROT)

HSP 1 Score: 138 bits (348), Expect = 7.630e-40
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 1
Query:  202 RFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            RF PG+ V VR A PPGH+RTPWY RGK GVVER+CG F NPEELAY R G P QPLYRVRF  +++W DY ENP D V+IEIY+H
Sbjct:    3 RFVPGERVLVRRAYPPGHIRTPWYIRGKTGVVERICGEFGNPEELAYGRDGTPKQPLYRVRFLQKEVWDDYAENPNDTVDIEIYEH 88          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A536TNH7_9PROT (Nitrile hydratase subunit beta n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A536TNH7_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.550e-39
Identity = 65/92 (70.65%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  184 AAFVPVRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            A  V  RF  GD V VR A P GHVRTP+Y RGK GV+ERLCGAF NPEELAY+R G PAQPLYRVRF  RD+WPDY   P DVVE+EIYQH
Sbjct:    6 ADAVSPRFHIGDRVMVREAYPIGHVRTPYYIRGKHGVIERLCGAFPNPEELAYARSGQPAQPLYRVRFLQRDVWPDYAGQPLDVVEVEIYQH 97          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A536Y890_9PROT (Nitrile hydratase subunit beta n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y890_9PROT)

HSP 1 Score: 134 bits (337), Expect = 4.980e-38
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1
Query:  202 RFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            R+ PGD VRVR   P GH+RTP+Y RG+ G +ERLCGAF NPEELA  R GLPAQPLYRVRF+ +D+WPDYR    DVVEIEIYQH
Sbjct:   15 RYKPGDRVRVRKTAPLGHIRTPYYIRGQVGEIERLCGAFPNPEELAQMRDGLPAQPLYRVRFKQKDVWPDYRGPETDVVEIEIYQH 100          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A537A6J7_9PROT (Nitrile hydratase subunit beta n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A6J7_9PROT)

HSP 1 Score: 134 bits (336), Expect = 1.050e-37
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 1
Query:  202 RFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            RF  GD V+VR A P GHVRTP+Y RGK GV+ER+CGAF NPEELAY+R G PAQPLYRVRF  R+LW DY   P DVVE+EIYQH
Sbjct:   24 RFQIGDRVKVREAYPIGHVRTPYYVRGKCGVIERVCGAFPNPEELAYAREGRPAQPLYRVRFLQRELWTDYAGQPVDVVEVEIYQH 109          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: UPI00199B167C (Nitrile hydratase subunit beta n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI00199B167C)

HSP 1 Score: 131 bits (329), Expect = 7.030e-37
Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  202 RFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            RF  GD V VR   P GHVRTP+Y RGKRGV+ERLCG + NPEELAY+RPGLP QPLYRVRF  RD+W +YR    D V+IEIYQH
Sbjct:   10 RFVSGDTVVVRALYPLGHVRTPYYIRGKRGVIERLCGVYGNPEELAYTRPGLPKQPLYRVRFLQRDVWQEYRGGADDTVDIEIYQH 95          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A7X1P7Y8_9PROT (Nitrile hydratase subunit beta n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P7Y8_9PROT)

HSP 1 Score: 135 bits (340), Expect = 2.980e-36
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  136 RMDEVRKAGGSD----AAGGAAFVPVRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            R D+ R+AGG      AA GAA V  RF+PG  VRVR    PGH+RTPWY RG  GV+ER CG F NPEELAY RPG P + LYRVRF    LWP+YR  P D ++I++Y+H
Sbjct:  169 RGDQRRRAGGKARRGRAAHGAAAVTPRFSPGAQVRVRKVDAPGHIRTPWYVRGHEGVIERFCGYFKNPEELAYFRPGTPLRALYRVRFRQAQLWPEYRGAPGDTLDIDLYEH 280          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A0S8CYB1_9PROT (Nitrile hydratase n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8CYB1_9PROT)

HSP 1 Score: 129 bits (324), Expect = 4.040e-36
Identity = 59/85 (69.41%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  205 FAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            F  GD VRVR A P GHVRTP+Y RGK GV+ERLCGA+ NPEELAY+RPGLP QPLYRVRF   D+W  YR    D V+IEIYQH
Sbjct:   11 FKAGDCVRVREAYPIGHVRTPYYIRGKSGVIERLCGAYPNPEELAYARPGLPRQPLYRVRFRQTDVWQGYRGKGDDTVDIEIYQH 95          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A1F4F3Z3_9PROT (Nitrile hydratase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4F3Z3_9PROT)

HSP 1 Score: 129 bits (323), Expect = 5.090e-36
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  193 VPVRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            +PVRFA GD VRVR   P GH+RTP+Y RG  GVVERLCG +  PEELA  R GLPAQPLYRVRF  R++WPDY  +  DVVEIEI+QH
Sbjct:    1 MPVRFAVGDRVRVRKTYPLGHIRTPYYIRGHAGVVERLCGNYPVPEELAQMRSGLPAQPLYRVRFLQREVWPDYAGHAEDVVEIEIFQH 89          
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Match: A0A0S8BB26_9PROT (NHase_beta domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BB26_9PROT)

HSP 1 Score: 125 bits (315), Expect = 7.420e-35
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  199 VRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVERLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEIYQH 459
            +RFAPGD VRVR + P GH+RTP+Y RG  GV+ER CGAF NPEELA  R GLPAQPLYRVRF  RD+W DY     D ++IEI+QH
Sbjct:    1 MRFAPGDRVRVRDSAPLGHIRTPFYIRGHVGVIERYCGAFPNPEELAQMRDGLPAQPLYRVRFLQRDVWADYPGPREDTIDIEIFQH 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J3E280_9PROT2.470e-4070.79NHase_beta domain-containing protein n=1 Tax=Aliid... [more]
A0A2E5KL52_9PROT7.630e-4068.60Nitrile hydratase n=1 Tax=Alphaproteobacteria bact... [more]
A0A536TNH7_9PROT1.550e-3970.65Nitrile hydratase subunit beta n=3 Tax=unclassifie... [more]
A0A536Y890_9PROT4.980e-3869.77Nitrile hydratase subunit beta n=1 Tax=Betaproteob... [more]
A0A537A6J7_9PROT1.050e-3770.93Nitrile hydratase subunit beta n=1 Tax=Betaproteob... [more]
UPI00199B167C7.030e-3768.60Nitrile hydratase subunit beta n=1 Tax=Prolixibact... [more]
A0A7X1P7Y8_9PROT2.980e-3657.14Nitrile hydratase subunit beta n=1 Tax=Betaproteob... [more]
A0A0S8CYB1_9PROT4.040e-3669.41Nitrile hydratase n=1 Tax=Betaproteobacteria bacte... [more]
A0A1F4F3Z3_9PROT5.090e-3667.42Nitrile hydratase n=1 Tax=Betaproteobacteria bacte... [more]
A0A0S8BB26_9PROT7.420e-3565.52NHase_beta domain-containing protein n=1 Tax=Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57168contigP-wetherbeei_contig57168:2..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380394.JADL01000002_gene1249
PFAMsNHase_beta
Model size459
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00483,RC01345,RC01432
KEGG koko:K20807
KEGG ReactionR04020,R05379,R05596,R07780,R07854
KEGG Pathwayko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.15e-43
EggNOG OGs2DBV6@1|root,32TY6@2|Bacteria,1N0TC@1224|Proteobacteria,2UCAJ@28211|Alphaproteobacteria,2JXVR@204441|Rhodospirillales
EC4.2.1.84
DescriptionNitrile hydratase beta subunit
Cds size459
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.4341428-CDS-P-wetherbeei_contig57168:1..1811683186848.4341428-CDS-P-wetherbeei_contig57168:1..181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57168 2..181 +
1683186848.4470901-CDS-P-wetherbeei_contig57168:234..5131683186848.4470901-CDS-P-wetherbeei_contig57168:234..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57168 235..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57168.1.1prot_P-wetherbeei_contig57168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57168 2..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57168.1.1

>prot_P-wetherbeei_contig57168.1.1 ID=prot_P-wetherbeei_contig57168.1.1|Name=mRNA_P-wetherbeei_contig57168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
DELRRNIEALGADDYDRMTYYERWMHAICQTLIQRGVINIDELGRRMDEV
RKAGGSDAAGGAAFVPVRFAPGDHVRVRTAIPPGHVRTPWYCRGKRGVVE
RLCGAFANPEELAYSRPGLPAQPLYRVRFESRDLWPDYRENPADVVEIEI
YQH
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mRNA from alignment at P-wetherbeei_contig57168:2..513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57168.1.1 ID=mRNA_P-wetherbeei_contig57168.1.1|Name=mRNA_P-wetherbeei_contig57168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=512bp|location=Sequence derived from alignment at P-wetherbeei_contig57168:2..513+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAACTGCGCCGCAATATCGAGGCACTGGGTGCGGATGACTACGACCG GATGACGTACTACGAACGCTGGATGCATGCGATCTGTCAGACGCTCATAC AGCGCGGCGTCATCAACATCGATGAGCTAGGCCGGCGCATGGATGAAGTG CGCAAGGCCGGCGGATCCGATGCGGCAGGTGTGCAATGAACGCCGTTGCC GGAGCGCTGGGCATGTACGGGGTCGACCCGGAGGGCGCCGCCTTCGTGCC TGTCAGGTTCGCGCCGGGCGATCATGTGCGGGTGCGGACTGCGATTCCGC CGGGGCATGTGCGCACCCCCTGGTACTGCCGCGGCAAGCGTGGCGTGGTG GAACGACTGTGCGGGGCTTTCGCCAATCCTGAGGAGCTCGCGTACAGCCG TCCCGGCCTGCCGGCGCAACCGCTGTACCGGGTTCGCTTCGAATCCCGTG ACCTGTGGCCGGACTATCGCGAGAACCCGGCGGACGTGGTCGAGATCGAG ATCTACCAACAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57168:2..513+

>mRNA_P-wetherbeei_contig57168.1.1 ID=mRNA_P-wetherbeei_contig57168.1.1|Name=mRNA_P-wetherbeei_contig57168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig57168:2..513+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAACTGCGCCGCAATATCGAGGCACTGGGTGCGGATGACTACGACCG
GATGACGTACTACGAACGCTGGATGCATGCGATCTGTCAGACGCTCATAC
AGCGCGGCGTCATCAACATCGATGAGCTAGGCCGGCGCATGGATGAAGTG
CGCAAGGCCGGCGGATCCGATGCGGCAGGTGGCGCCGCCTTCGTGCCTGT
CAGGTTCGCGCCGGGCGATCATGTGCGGGTGCGGACTGCGATTCCGCCGG
GGCATGTGCGCACCCCCTGGTACTGCCGCGGCAAGCGTGGCGTGGTGGAA
CGACTGTGCGGGGCTTTCGCCAATCCTGAGGAGCTCGCGTACAGCCGTCC
CGGCCTGCCGGCGCAACCGCTGTACCGGGTTCGCTTCGAATCCCGTGACC
TGTGGCCGGACTATCGCGAGAACCCGGCGGACGTGGTCGAGATCGAGATC
TACCAACAT
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