mRNA_P-wetherbeei_contig57153.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57153.1.1
Unique NamemRNA_P-wetherbeei_contig57153.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A7J7IPP2_9RHOD (Ubiquitin-conjugating enzyme E2 N n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IPP2_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 8.740e-10
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V LAGP GSPYEG V  LE++L   YP +AP A  L + ++H N   L  G      ++ + RW  +  +R ++ ++ AL++EP+P
Sbjct:   38 VILAGPEGSPYEGGVFRLELFLPADYPMQAPRARFLTK-IYHPNIDRL--GRVCL--DILKDRWSPALQIRTVLLSIQALMSEPNP 118
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: UPI00096B05E4 (ubiquitin-conjugating enzyme E2 N-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B05E4)

HSP 1 Score: 58.5 bits (140), Expect = 9.760e-9
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP GSPYEG +  LE++L E YP  AP+   L R +FH N   L       L ++    W  +  +R ++ ++ ALL+ P+P
Sbjct:   38 VVMAGPPGSPYEGGIFKLELFLPENYPLVAPSVRFLTR-IFHPNIDKLGRICLDILKDM----WSPALQMRTVLLSIQALLSSPNP 118
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BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A1D1VHD7_RAMVA (UBC core domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VHD7_RAMVA)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-8
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            VA+AGP GSP+EG V  LE++L E YP  AP  V    +++H N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   41 VAVAGPEGSPFEGGVFKLELFLPEEYPMSAPK-VRFMTKIYHPNIDRL--GRICL--DILKDKWSPALQIRTVLLSIQALLSAPNP 121
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A8J9TQB7_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TQB7_BRAAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP GSPYEG +  LE++L E YP   P+   L + +FH N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   37 VVMAGPAGSPYEGGLFKLELFLPENYPLSPPSVRFLTK-IFHPNIDKL--GRICL--DILKNQWSPALQVRTVLLSIQALLSSPNP 117
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A1Y1JXP2_PHOPY (UBC core domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1JXP2_PHOPY)

HSP 1 Score: 56.2 bits (134), Expect = 7.950e-8
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP+GSPYEG +  LE++L E YP   P+   L + ++H N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   39 VVMAGPKGSPYEGGLFKLEMFLPENYPLSPPSVRFLTK-IYHPNIDKL--GRICL--DILKDQWSPALQMRTVLLSIQALLSSPNP 119
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A6P6XJE2_DERPT (ubiquitin-conjugating enzyme E2 N n=4 Tax=Arthropoda TaxID=6656 RepID=A0A6P6XJE2_DERPT)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP GSP+EG V  LE++L E YP  AP  V    +++H N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   37 VVVAGPEGSPFEGGVFKLELFLPEEYPMSAPK-VRFMTKIYHPNIDKL--GRICL--DILKDKWSPALQIRTVLLSIQALLSAPNP 117
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A2P6NPQ5_9EUKA (Ubiquitin-conjugating enzyme 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NPQ5_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP GSP+EG V  LE++L+E YP  AP  V    R++H N   L  G      ++ + +W  +  +R ++ ++  LL+ P+P
Sbjct:   38 VMIAGPTGSPFEGGVFKLELFLTEEYPM-APPKVRFLTRIYHPNIDRL--GRICL--DILKEKWSPALQIRTVLLSIQGLLSAPNP 118
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A7R9BT92_9CRUS (Hypothetical protein n=2 Tax=Podocopida TaxID=84318 RepID=A0A7R9BT92_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V +AGP GSP+EG V  LE++L E YP  AP    L + +FH N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   40 VVVAGPDGSPFEGGVFKLELFLPEEYPMSAPKVRFLTK-IFHPNVDKL--GRICL--DILKDKWSPALQIRTVLLSIQALLSAPNP 120
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A7S3RBI3_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3RBI3_9SPIT)

HSP 1 Score: 55.8 bits (133), Expect = 1.210e-7
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            V + GP+GSPYEG +  LE++L E YP  AP  V    ++FH N   L  G      ++ + +W  +  +R ++ ++ ALL+ P+P
Sbjct:   45 VIIQGPQGSPYEGGIFKLELFLPEEYPM-APPKVRFLTKMFHPNIDKL--GRICL--DILKDKWSPALQIRTVLLSIQALLSAPNP 125
[Close]
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Match: A0A164PWT5_9AGAM (Ubiquitin-conjugating enzyme n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164PWT5_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    1 VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPGGATAALPELFRRRWDASWDLRRLIGAVLALLAEPDP 258
            VA+ GP GSP+EG +  LE++L E YP   P    L + ++H N   L  G      ++ + +W  +  +R ++ +V ALL+ P+P
Sbjct:   36 VAITGPEGSPFEGGIFKLELFLPEEYPMSPPKVRFLTK-IYHPNIDKL--GRICL--DILKEKWSPALQIRTVLLSVQALLSSPNP 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57153.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7IPP2_9RHOD8.740e-1038.37Ubiquitin-conjugating enzyme E2 N n=2 Tax=Cyanidia... [more]
UPI00096B05E49.760e-937.21ubiquitin-conjugating enzyme E2 N-like n=1 Tax=Aet... [more]
A0A1D1VHD7_RAMVA2.860e-836.05UBC core domain-containing protein n=1 Tax=Ramazzo... [more]
A0A8J9TQB7_BRAAE3.750e-834.88Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A1Y1JXP2_PHOPY7.950e-833.72UBC core domain-containing protein n=1 Tax=Photinu... [more]
A0A6P6XJE2_DERPT1.060e-734.88ubiquitin-conjugating enzyme E2 N n=4 Tax=Arthropo... [more]
A0A2P6NPQ5_9EUKA1.060e-734.88Ubiquitin-conjugating enzyme 1 n=1 Tax=Planoprotos... [more]
A0A7R9BT92_9CRUS1.120e-736.05Hypothetical protein n=2 Tax=Podocopida TaxID=8431... [more]
A0A7S3RBI3_9SPIT1.210e-734.88Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]
A0A164PWT5_9AGAM1.410e-733.72Ubiquitin-conjugating enzyme n=2 Tax=Sistotremastr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57153contigP-wetherbeei_contig57153:220..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR76
PFAMsEF-hand_5,F-box-like,LRR_6,UQ_con
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K10573,ko:K20217
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009791,GO:0009987,GO:0010228,GO:0010498,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022414,GO:0030163,GO:0031371,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033503,GO:0033523,GO:0033554,GO:0034641,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061458,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
Evalue7.3e-15
EggNOG OGsCOG5078@1|root,COG5126@1|root,KOG0027@2759|Eukaryota,KOG0419@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_005090.1
EC2.3.2.23
Descriptionhistone ubiquitination
Cds size273
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.20668-CDS-P-wetherbeei_contig57153:219..4921683186848.20668-CDS-P-wetherbeei_contig57153:219..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57153 220..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57153.1.1prot_P-wetherbeei_contig57153.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57153 220..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57153.1.1

>prot_P-wetherbeei_contig57153.1.1 ID=prot_P-wetherbeei_contig57153.1.1|Name=mRNA_P-wetherbeei_contig57153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
VALAGPRGSPYEGAVIPLEIWLSECYPFEAPAAVLLRRRLFHLNFATLPG
GATAALPELFRRRWDASWDLRRLIGAVLALLAEPDPLLLPE
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mRNA from alignment at P-wetherbeei_contig57153:220..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57153.1.1 ID=mRNA_P-wetherbeei_contig57153.1.1|Name=mRNA_P-wetherbeei_contig57153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig57153:220..492- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCTGGCTGGGCCCCGGGGTTCGCCGTACGAAGGGGCGGTGATCCC
GCTCGAAATCTGGCTGTCCGAGTGCTACCCATTCGAGGCGCCGGCGGCCG
TCCTGCTGCGGCGGCGCCTCTTCCACCTCAACTTCGCGACGCTGCCGGGC
GGCGCGACGGCGGCGCTGCCGGAACTGTTCCGGCGACGCTGGGATGCGTC
GTGGGACCTCCGGCGGCTGATCGGAGCCGTGCTGGCCCTACTGGCGGAGC
CGGACCCGTTGCTGCTGCCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57153:220..492-

>mRNA_P-wetherbeei_contig57153.1.1 ID=mRNA_P-wetherbeei_contig57153.1.1|Name=mRNA_P-wetherbeei_contig57153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig57153:220..492- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCTGGCTGGGCCCCGGGGTTCGCCGTACGAAGGGGCGGTGATCCC
GCTCGAAATCTGGCTGTCCGAGTGCTACCCATTCGAGGCGCCGGCGGCCG
TCCTGCTGCGGCGGCGCCTCTTCCACCTCAACTTCGCGACGCTGCCGGGC
GGCGCGACGGCGGCGCTGCCGGAACTGTTCCGGCGACGCTGGGATGCGTC
GTGGGACCTCCGGCGGCTGATCGGAGCCGTGCTGGCCCTACTGGCGGAGC
CGGACCCGTTGCTGCTGCCGGAG
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