mRNA_P-wetherbeei_contig57149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57149.1.1
Unique NamemRNA_P-wetherbeei_contig57149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57149.1.1 vs. uniprot
Match: UPI001C3C9E56 (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C9E56)

HSP 1 Score: 142 bits (358), Expect = 3.420e-40
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 GFGRSLREALQVNYRFRLPGGPGSTNADQTPTGTNVWTARYGDCPALQASSGGGSSSTLVNGVILAGLTGLLMIVFGLRAVRRRR 255
            GF RSLR+AL++ Y  +LPGGPGSTNAD+TP G NVW ARYGDCP LQASSGGGSSSTLVNGVILAGLTGLL+++F LRA+RRRR
Sbjct:  182 GFARSLRDALEIRYALKLPGGPGSTNADETPRGENVWLARYGDCPPLQASSGGGSSSTLVNGVILAGLTGLLLVIFALRAIRRRR 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C3C9E563.420e-4078.82hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57149contigP-wetherbeei_contig57149:90..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size273
Hectar predicted targeting categorymitochondrion
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.0345566-CDS-P-wetherbeei_contig57149:89..3621683186848.0345566-CDS-P-wetherbeei_contig57149:89..362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57149 90..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57149.1.1prot_P-wetherbeei_contig57149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57149 90..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57149.1.1

>prot_P-wetherbeei_contig57149.1.1 ID=prot_P-wetherbeei_contig57149.1.1|Name=mRNA_P-wetherbeei_contig57149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
GFGRSLREALQVNYRFRLPGGPGSTNADQTPTGTNVWTARYGDCPALQAS
SGGGSSSTLVNGVILAGLTGLLMIVFGLRAVRRRRDRRSV*
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mRNA from alignment at P-wetherbeei_contig57149:90..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57149.1.1 ID=mRNA_P-wetherbeei_contig57149.1.1|Name=mRNA_P-wetherbeei_contig57149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig57149:90..362- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGGGCGCTCGCTGCGCGAGGCCCTCCAGGTGAACTACCGCTTCCG
GCTCCCCGGCGGGCCCGGCAGCACCAACGCCGATCAGACCCCCACCGGAA
CCAACGTCTGGACGGCCCGATACGGCGATTGCCCCGCCCTGCAGGCCTCC
TCGGGCGGCGGGAGCTCGAGCACCCTCGTCAACGGGGTCATCCTGGCGGG
CCTCACGGGCCTTCTGATGATCGTCTTCGGCCTCCGAGCAGTGCGCCGGC
GCCGCGATCGGCGCTCCGTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57149:90..362-

>mRNA_P-wetherbeei_contig57149.1.1 ID=mRNA_P-wetherbeei_contig57149.1.1|Name=mRNA_P-wetherbeei_contig57149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig57149:90..362- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGGGCGCTCGCTGCGCGAGGCCCTCCAGGTGAACTACCGCTTCCG
GCTCCCCGGCGGGCCCGGCAGCACCAACGCCGATCAGACCCCCACCGGAA
CCAACGTCTGGACGGCCCGATACGGCGATTGCCCCGCCCTGCAGGCCTCC
TCGGGCGGCGGGAGCTCGAGCACCCTCGTCAACGGGGTCATCCTGGCGGG
CCTCACGGGCCTTCTGATGATCGTCTTCGGCCTCCGAGCAGTGCGCCGGC
GCCGCGATCGGCGCTCCGTGTAG
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