mRNA_P-wetherbeei_contig5712.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5712.3.1
Unique NamemRNA_P-wetherbeei_contig5712.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A433ALM7_9FUNG (26S proteasome subunit RPN7-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433ALM7_9FUNG)

HSP 1 Score: 117 bits (292), Expect = 8.020e-28
Identity = 69/167 (41.32%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 VEAPPNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKM-DIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            V++P N DL    A Y+G T+V RL+F A+RCPAL  +AY  A+ ELK   +D+ +Y   V K     +  G A        +D  WV  T +RA    E+LE+EL  +KNN+ K++IR  + E+G      GD++ ALK Y R RDYC T+    +MCLNV+RV +
Sbjct:   20 VDSPNNLDLDTYIANYKGHTKVDRLLFIADRCPALQIDAYRLAVGELKTGSLDSAKYSHAVGKLNDALIARGLA-----PQSLDAAWVEATQKRARAQTEKLESELKGYKNNMIKESIRMGHMELGDHFYNCGDLSNALKCYSRTRDYCTTAKHIVDMCLNVMRVSI 181          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A7S3X2F4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X2F4_9SPIT)

HSP 1 Score: 113 bits (283), Expect = 1.240e-26
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   40 ARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            + Y G+TR+ RL F A   PAL  EA   AI   K  I+TG Y+ +         R             D  WV   D++ + MLE+LEA+L +HK +LDK++IR ++ E+G F + RGD  AALK YVR RDYCATS  T  MCLNVI+V +
Sbjct:    3 SNYSGYTRLRRLQFIAAHEPALRTEALQMAIDLAKQGINTGLYLELCATEGCPLPR-------------DDEWVEAVDKKTSSMLEKLEADLNSHKTSLDKESIRMAHTELGDFHRNRGDFAAALKCYVRTRDYCATSRHTIRMCLNVIQVSI 142          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: C1DZB5_MICCC (PCI domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DZB5_MICCC)

HSP 1 Score: 114 bits (285), Expect = 1.440e-26
Identity = 74/168 (44.05%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 VEAPPNYDLRAMSARYEGFTRVSRLIFAAERCP--ALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            +E  P  D+ A++A Y     V RL+F A+R    AL  +A   A   LK   DT  Y A+V+K   +A R G         E+D+ WV +TDRRAA+  E L+AEL  +K N+ K++IR  +N++G F   RGD+NAA K YVR RDYC T      MCLNVIRV V
Sbjct:    2 IEDLPPVDVEAITAGYGPHAAVPRLMFIADRSDDEALKLDALRAAHDILKQGDDTRAYAAVVEK---IAGRLG------PSHELDKEWVDETDRRAAKKQEVLDAELNGYKTNMIKESIRMGHNDLGDFYHARGDLNAAFKCYVRTRDYCTTPRHVVNMCLNVIRVSV 160          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A7R9UHC5_DIALT (Hypothetical protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UHC5_DIALT)

HSP 1 Score: 105 bits (261), Expect = 1.700e-23
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   19 YDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRN--WVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIVL 501
            +DL A +  Y G  +V RL+F AE    L Q A   A+ EL   ++T  Y  ++ K      R  GA A   +  + RN  WV  TDRRA Q ++++E +L+  K +L+K+AIR  +N++G     RGD  AALKSYVRARDYC T+     MCLNV+++ VL
Sbjct:    1 HDLSAEA--YVGPAKVQRLLFIAEHSAELRQPALRLALTELSASLNTALYSDVIDK------RLAGACA---ELGIVRNAAWVEATDRRAQQQVDKIEHDLSAAKTSLNKEAIRSCHNQLGDLHAERGDYGAALKSYVRARDYCTTTQHVVGMCLNVVKMSVL 152          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A8H7RHN0_9FUNG (PCI domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RHN0_9FUNG)

HSP 1 Score: 104 bits (260), Expect = 2.370e-23
Identity = 60/167 (35.93%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 VEAPPNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMD-IDTGRYMAIVQKAAALAVRAGGAAAAADKP--EVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRV 492
            VE P ++D       YEGFTR++R +F A+RC ALA E Y TAI E+K   ++T +Y   +    A+         + ++P    D++W+ +T  R    L+ LE EL   K ++ K+ IR ++ ++G +  ++GD+ AA+K+Y+R RDYC T+    +MC N I+V
Sbjct:    6 VEVPEDFDFETYINSYEGFTRIARSLFIAKRCDALAVEGYKTAIHEIKTTTMNTTKYNYTLDSLNAVL-------RSQNRPILPADQDWITETQLRNKATLDALENELKAAKTSVTKEGIRVAHTKLGDYYYKKGDLPAAMKNYIRTRDYCTTTQNIIDMCFNTIKV 165          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A4D9D6N4_9STRA (PCI domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6N4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.600e-23
Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = 1
Query:   13 PNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            PN+D+   +ARY G+T++ RL+F A+ C +   +AY  A+  LK        + + +K   L    GG    A    +D  W    D+RAA   ERLE++L T +  + K++IR  Y ++G F   RGD++ ALK++VR RDYC+ +    EMCLNVI+V V
Sbjct:   48 PNFDIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDTLKQPRSLN--IQLYRKVMGLV---GGRLGPAYS--LDATWAEDIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSV 202          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A7I8LNG5_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LNG5_SPIIN)

HSP 1 Score: 104 bits (259), Expect = 3.760e-23
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 1
Query:   22 DLRAMSARYEGFTRVSRLIFAAERC--PALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            D+ A +  Y G T++SRL+F AERC    +  EA   A  E+K   +T  Y  +VQK   +  R G       + E+D+ WV   DRRA    E+LE EL  ++ NL K++IR  YN+ G F    G++  A K+YVR RDYC TS    +MCLNVI V +
Sbjct:   34 DVEAYAGLYSGRTKISRLLFVAERCGNQGMEIEALRMAYDEIKKGENTQMYREVVQK---IGGRLG------PQYEMDQAWVDTVDRRAELRKEKLENELNGYRTNLIKESIRMGYNDFGDFYYAHGNLGEAFKNYVRTRDYCTTSKHIIQMCLNVILVSI 185          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: L8GVV1_ACACA (PCI domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVV1_ACACA)

HSP 1 Score: 104 bits (259), Expect = 3.860e-23
Identity = 63/161 (39.13%), Postives = 90/161 (55.90%), Query Frame = 1
Query:   16 NYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRVIV 498
            ++DL    + Y G T++ R IF AER   L  EA   A+ E+K   +T  Y  +V KA     + GG          D+ W+   +++A Q  +RLE EL  ++ NL K++IR  +N++G F   RGD+ +ALK YVR RDYC TS     MCLNVI+V +
Sbjct:   26 DFDLEGYLSNYSGHTKIFRAIFIAERSKDLELEATRIALEEIKKTHNTALYREVVDKAIE---KHGGLFTK------DQAWIDSVEKKAQQQNDRLEQELNGYRTNLIKESIRMGHNDLGDFHYDRGDLQSALKCYVRTRDYCTTSKHNISMCLNVIKVSI 177          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A8H7BNH1_9FUNG (Cop9 signalosome complex subunit n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BNH1_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 4.420e-23
Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 VEAPPNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIR 489
            +EAP N D  +    Y+G TR++R +F A+ C +L  EAY  A+ E+K      +      +A  LA+R        +  E+D++W+  T +     LE+L+A L T+KN+L K++IR +   +G F    G+  AALK+Y+RARDYCATS    EMC N+I+
Sbjct:    6 IEAPDNLDFESYINNYQGRTRINRALFIAQHCDSLEIEAYKFALNEIKETTKNVKQYKKCVEALNLALRKQNL----EPIELDQDWITNTKKDNKARLEQLDAALKTYKNSLIKESIRVTQTGLGDFYFSCGENGAALKNYIRARDYCATSQHVLEMCFNMIK 164          
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Match: A0A7S2H012_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H012_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.120e-23
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 1
Query:   13 PNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMDIDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDR---NWVAQTDRRAAQMLERLEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCATSAETAEMCLNVIRV 492
            P +DL++   RY   T+++RL   A+ CPAL  EAY   + EL+  +++  Y +       LAV+ G        P+  +    WV + +RRA   LE L  ++   K NL+KD IR  YN +G F   RGD+N A+K +VR RDYC+T+    +MCL VI V
Sbjct:   44 PGFDLQSYIGRYTQQTKIARLQLIAQTCPALQVEAYHLLMQELRQGLNSDLYNS-------LAVQLG--------PQFAKWGPQWVEEVERRATATLESLNTDINQAKANLEKDTIRAGYNALGEFFYNRGDLNQAMKYFVRTRDYCSTNRHMTDMCLKVIHV 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5712.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433ALM7_9FUNG8.020e-2841.3226S proteasome subunit RPN7-domain-containing prot... [more]
A0A7S3X2F4_9SPIT1.240e-2643.79Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
C1DZB5_MICCC1.440e-2644.05PCI domain-containing protein n=2 Tax=Micromonas T... [more]
A0A7R9UHC5_DIALT1.700e-2341.72Hypothetical protein n=3 Tax=Diacronema lutheri Ta... [more]
A0A8H7RHN0_9FUNG2.370e-2335.93PCI domain-containing protein n=1 Tax=Mucor saturn... [more]
A0A4D9D6N4_9STRA2.600e-2338.27PCI domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7I8LNG5_SPIIN3.760e-2340.99Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
L8GVV1_ACACA3.860e-2339.13PCI domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A8H7BNH1_9FUNG4.420e-2338.04Cop9 signalosome complex subunit n=1 Tax=Apophysom... [more]
A0A7S2H012_9STRA7.120e-2338.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5712contigP-wetherbeei_contig5712:3215..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LM81
PFAMsPCI,RPN7
Model size513
Max annot lvl2759|Eukaryota
KEGG koko:K01265,ko:K12175
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.39e-31
EggNOG OGsKOG0686@1|root,KOG0686@2759|Eukaryota
EC3.4.11.18
Descriptionprotein deneddylation
Cds size513
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.7574446-CDS-P-wetherbeei_contig5712:3214..37271683186847.7574446-CDS-P-wetherbeei_contig5712:3214..3727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5712 3215..3727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5712.3.1prot_P-wetherbeei_contig5712.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5712 3215..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5712.3.1

>prot_P-wetherbeei_contig5712.3.1 ID=prot_P-wetherbeei_contig5712.3.1|Name=mRNA_P-wetherbeei_contig5712.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
VEAPPNYDLRAMSARYEGFTRVSRLIFAAERCPALAQEAYATAIAELKMD
IDTGRYMAIVQKAAALAVRAGGAAAAADKPEVDRNWVAQTDRRAAQMLER
LEAELTTHKNNLDKDAIRRSYNEIGRFCQRRGDMNAALKSYVRARDYCAT
SAETAEMCLNVIRVIVLSNA*
back to top

mRNA from alignment at P-wetherbeei_contig5712:3215..3727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5712.3.1 ID=mRNA_P-wetherbeei_contig5712.3.1|Name=mRNA_P-wetherbeei_contig5712.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig5712:3215..3727+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGGCGCCGCCCAACTACGACCTCCGCGCGATGTCGGCGCGCTACGA GGGCTTCACGCGCGTCTCCCGCCTCATCTTCGCCGCCGAGCGCTGCCCGG CCCTCGCACAGGAGGCCTACGCTACCGCCATCGCCGAGCTCAAGATGGAC ATCGACACGGGTCGCTACATGGCCATAGTACAAAAGGCGGCCGCCCTCGC CGTCCGCGCCGGCGGTGCCGCCGCCGCTGCTGATAAGCCCGAGGTGGACC GCAACTGGGTCGCCCAGACAGACCGCCGCGCGGCGCAGATGCTGGAGCGG CTGGAGGCTGAGCTGACGACCCACAAAAACAACCTAGACAAGGACGCCAT CCGCCGGAGCTACAACGAGATCGGGCGATTCTGCCAGCGGCGGGGTGATA TGAACGCGGCCCTGAAGAGCTATGTGCGCGCGCGCGACTACTGCGCCACG TCGGCGGAGACGGCCGAGATGTGCCTCAACGTCATTCGGGTGATAGTCCT TTCCAATGCCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5712:3215..3727+

>mRNA_P-wetherbeei_contig5712.3.1 ID=mRNA_P-wetherbeei_contig5712.3.1|Name=mRNA_P-wetherbeei_contig5712.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig5712:3215..3727+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGGCGCCGCCCAACTACGACCTCCGCGCGATGTCGGCGCGCTACGA
GGGCTTCACGCGCGTCTCCCGCCTCATCTTCGCCGCCGAGCGCTGCCCGG
CCCTCGCACAGGAGGCCTACGCTACCGCCATCGCCGAGCTCAAGATGGAC
ATCGACACGGGTCGCTACATGGCCATAGTACAAAAGGCGGCCGCCCTCGC
CGTCCGCGCCGGCGGTGCCGCCGCCGCTGCTGATAAGCCCGAGGTGGACC
GCAACTGGGTCGCCCAGACAGACCGCCGCGCGGCGCAGATGCTGGAGCGG
CTGGAGGCTGAGCTGACGACCCACAAAAACAACCTAGACAAGGACGCCAT
CCGCCGGAGCTACAACGAGATCGGGCGATTCTGCCAGCGGCGGGGTGATA
TGAACGCGGCCCTGAAGAGCTATGTGCGCGCGCGCGACTACTGCGCCACG
TCGGCGGAGACGGCCGAGATGTGCCTCAACGTCATTCGGGTGATAGTCCT
TTCCAATGCCTGA
back to top