mRNA_P-wetherbeei_contig5704.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5704.1.2
Unique NamemRNA_P-wetherbeei_contig5704.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5704.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5704contigP-wetherbeei_contig5704:1340..3738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1982
Hectar predicted targeting categoryother localisation
Exons3
Cds size1287
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.665156-UTR-P-wetherbeei_contig5704:1339..19001683186846.665156-UTR-P-wetherbeei_contig5704:1339..1900Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5704 1340..1900 -
1683186846.709688-UTR-P-wetherbeei_contig5704:3604..37381683186846.709688-UTR-P-wetherbeei_contig5704:3604..3738Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5704 3605..3738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.6757772-CDS-P-wetherbeei_contig5704:1900..25361683186846.6757772-CDS-P-wetherbeei_contig5704:1900..2536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5704 1901..2536 -
1683186846.6860032-CDS-P-wetherbeei_contig5704:2784..28831683186846.6860032-CDS-P-wetherbeei_contig5704:2784..2883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5704 2785..2883 -
1683186846.6986978-CDS-P-wetherbeei_contig5704:3052..36041683186846.6986978-CDS-P-wetherbeei_contig5704:3052..3604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5704 3053..3604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5704.1.2prot_P-wetherbeei_contig5704.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5704 1901..3604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5704.1.2

>prot_P-wetherbeei_contig5704.1.2 ID=prot_P-wetherbeei_contig5704.1.2|Name=mRNA_P-wetherbeei_contig5704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=429bp
MLQGTSPERRGRLLVGKRELGALPVGCFSPFEISPSPISRPIQIRRAGNS
ISSIIEGDRTVSGVLRSATLSTGGWHRVYWTNPFPPSNAGTGSFFAANGA
AGGIVASGCVTAVPTADGSSPVRAGVEFLAVNATAVTPTGGALGGNGGRS
GHCAAASALPAAASAHPFSAEGFATRDAIEGGPIGPELPVAVASEADSDV
ECDSRRWVFHALMRGKKVLVYECLPPVGPKQVPDVLEEGRLVAVYSPDCV
CGSLATGRLWLLESAFPKAEQARGGGGGGAGAEGFAADAPFDAAPPFDAV
PLPAAAFAAVVGIRPTAASVTIATVTGSQRTPLRHRGGEGAVVADARVAE
PLGHSLATAAVRTDGEDLPAMGEPAAARPASVLPARATAEERVLVVVIEA
LAQYKREAQAALWSVNGDERWCVVSDTL*
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mRNA from alignment at P-wetherbeei_contig5704:1340..3738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5704.1.2 ID=mRNA_P-wetherbeei_contig5704.1.2|Name=mRNA_P-wetherbeei_contig5704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2399bp|location=Sequence derived from alignment at P-wetherbeei_contig5704:1340..3738- (Phaeothamnion wetherbeei SAG_119_79)
GCTTATCAAGTATACAAGAGCGTCCGAGAAAGTACCGGTCTTGAAGGTAC
GGGGTTTTGTGTTTGGTCGATGATGCGAGGAGCATTGCAGCCCGTCCGTC
GCTGAATCGCTGCCGCTCAAAAGGATACCTTCACATGCTCCAGGGAACAT
CACCCGAACGGCGCGGCCGCCTTTTGGTTGGTAAAAGAGAGTTGGGCGCA
CTACCTGTGGGCTGTTTTTCTCCCTTCGAAATCTCTCCTTCTCCCATTTC
TCGCCCGATCCAGATCAGGAGGGCAGGAAACTCGATCTCTAGCATAATTG
AGGGCGACCGAACCGTGAGCGGCGTACTGCGGAGCGCGACGCTGTCCACC
GGCGGCTGGCACCGCGTCTACTGGACAAACCCGTTTCCGCCCTCCAACGC
CGGCACCGGCTCTTTCTTCGCAGCCAATGGTGCAGCCGGCGGCATAGTCG
CCTCGGGCTGCGTCACAGCCGTGCCGACGGCCGACGGCAGCTCTCCTGTC
AGGGCCGGTGTCGAATTCTTGGCCGTAAATGCAACTGCGGTCACTCCAAC
GGGAGGAGCTTTAGGTGGTAACGGCGGTCGCAGTGGCCATTGCGCAGCTG
CTTCGGCGTTGCCCGCCGCTGCGAGCGCTCACCCGTTTTCTGCTGAGGGC
TTCGCGACACGCGACGCCATTGAGGGTGGTCCCATAGTGAGCCCATCTTC
TTTCATGGATCGGTATTACAGTTTTTGTGAAATACAATCGGAGGCATTCA
AAGGCTGTAATAACATGACTCATCCCCTCACCGCCACGCCCAAATTTGCC
GCCGCAACCACCGACCTCGGCGCCGCCGCCGCCGCTGCTGCCACGACCGT
TACAGGGGCCGGAGCTACCTGTAGCAGTGGCCTCGGAGGCCGACAGCGAC
GTGGAGTGCGACTCGCGGCGCTGGGTCTTCCACGCCTTGATGCGCGGGAA
GAAGGTGCGCCGGAGCCGGCTGCTGTAAATCTATACGTTGTCGAACGCGA
GTTTGTTCCGGCCAGCTTGGTAGAACAGCAAATCTGAAAGAGGGGGCTCT
GCGAAAGCGCTTAGATCCCTCCATAACCCGGGAATTTTCTCCTCTCCCGC
CTCTGCAGTATAATCCTACACATCTTGCTAGCAGAACTTTCCAACCCAAT
TCTGTCCACTTTTCTTGCCTTTTCCTTTTCTTCCTTACCAATCTGCCGAC
AGGTGCTCGTCTACGAGTGCCTGCCGCCCGTCGGCCCCAAGCAGGTTCCG
GACGTCCTAGAGGAAGGCCGCCTCGTCGCTGTTTACTCGCCGGACTGCGT
GTGCGGCTCCCTCGCGACGGGCCGCCTCTGGCTGCTCGAGAGCGCATTTC
CAAAGGCCGAGCAGGCGCGCGGTGGCGGCGGCGGCGGCGCCGGCGCCGAG
GGATTTGCGGCGGATGCGCCATTCGACGCTGCGCCACCGTTCGACGCGGT
GCCGTTGCCGGCCGCCGCCTTCGCCGCTGTTGTTGGCATCAGGCCGACCG
CGGCATCAGTAACAATCGCTACCGTCACGGGTTCTCAGAGGACGCCCCTC
CGTCACCGCGGCGGCGAGGGAGCCGTCGTCGCCGATGCCCGCGTGGCAGA
GCCATTAGGACATTCTCTGGCGACTGCAGCAGTGCGAACCGACGGGGAAG
ATCTGCCGGCGATGGGAGAACCGGCGGCGGCGAGGCCGGCTTCCGTCTTA
CCTGCCCGGGCGACAGCGGAGGAAAGAGTACTCGTCGTCGTCATCGAGGC
TTTGGCGCAGTACAAGCGGGAAGCTCAGGCAGCGCTGTGGTCGGTCAATG
GCGACGAGCGGTGGTGCGTCGTCAGTGACACTCTGTAGAGGGGTGAGCTG
GCTTGGTCGGGTTGGTCGGTTGGTTGATCTTTTGCGTTATCAGTCCTGTG
GGGTACCAACGAATGCGCGCCGTCCTTTCTCTACTTCGTGGACGGAAGGG
GATGGGGCGGAATGTTACATTCGCGACGGGTCGATTTCACGAAATCCGAG
CAGGAGACTCTGGCCCATTCGCCGTCTTTTCTTGTTGCAGAAAGGGGGGC
GGGGGCGGAACAGTCACAACACCATCGCCGTGGGTTGGTTTTACGAAACA
GGCGCTTCCCGGGCTTCGGAAGGACAGCGGAGGCTTGTGCACTCGCCGCT
TTATACCTTCTTGTTATGTGGAGGGTGCGGATGGGGCGAAAACGTCAAAA
CACCGTCGCTGCGAGCCGGTTTTACGAAACCGCGACAGCCTGGGCGTTCG
GGAAGATGGCGGAGAATGGCCTACTGGCAAACAATCATACCTATTCGTAG
CGTAATATCAAGCAATTGTGCACAGTCTCGCTTGCGCCCCGCCAGCGCAG
AGTCAATGCGACTGGCTGGACGCGCTTTCAAACGAATCCACATGCCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5704:1340..3738-

>mRNA_P-wetherbeei_contig5704.1.2 ID=mRNA_P-wetherbeei_contig5704.1.2|Name=mRNA_P-wetherbeei_contig5704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1287bp|location=Sequence derived from alignment at P-wetherbeei_contig5704:1340..3738- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCAGGGAACATCACCCGAACGGCGCGGCCGCCTTTTGGTTGGTAA
AAGAGAGTTGGGCGCACTACCTGTGGGCTGTTTTTCTCCCTTCGAAATCT
CTCCTTCTCCCATTTCTCGCCCGATCCAGATCAGGAGGGCAGGAAACTCG
ATCTCTAGCATAATTGAGGGCGACCGAACCGTGAGCGGCGTACTGCGGAG
CGCGACGCTGTCCACCGGCGGCTGGCACCGCGTCTACTGGACAAACCCGT
TTCCGCCCTCCAACGCCGGCACCGGCTCTTTCTTCGCAGCCAATGGTGCA
GCCGGCGGCATAGTCGCCTCGGGCTGCGTCACAGCCGTGCCGACGGCCGA
CGGCAGCTCTCCTGTCAGGGCCGGTGTCGAATTCTTGGCCGTAAATGCAA
CTGCGGTCACTCCAACGGGAGGAGCTTTAGGTGGTAACGGCGGTCGCAGT
GGCCATTGCGCAGCTGCTTCGGCGTTGCCCGCCGCTGCGAGCGCTCACCC
GTTTTCTGCTGAGGGCTTCGCGACACGCGACGCCATTGAGGGTGGTCCCA
TAGGGCCGGAGCTACCTGTAGCAGTGGCCTCGGAGGCCGACAGCGACGTG
GAGTGCGACTCGCGGCGCTGGGTCTTCCACGCCTTGATGCGCGGGAAGAA
GGTGCTCGTCTACGAGTGCCTGCCGCCCGTCGGCCCCAAGCAGGTTCCGG
ACGTCCTAGAGGAAGGCCGCCTCGTCGCTGTTTACTCGCCGGACTGCGTG
TGCGGCTCCCTCGCGACGGGCCGCCTCTGGCTGCTCGAGAGCGCATTTCC
AAAGGCCGAGCAGGCGCGCGGTGGCGGCGGCGGCGGCGCCGGCGCCGAGG
GATTTGCGGCGGATGCGCCATTCGACGCTGCGCCACCGTTCGACGCGGTG
CCGTTGCCGGCCGCCGCCTTCGCCGCTGTTGTTGGCATCAGGCCGACCGC
GGCATCAGTAACAATCGCTACCGTCACGGGTTCTCAGAGGACGCCCCTCC
GTCACCGCGGCGGCGAGGGAGCCGTCGTCGCCGATGCCCGCGTGGCAGAG
CCATTAGGACATTCTCTGGCGACTGCAGCAGTGCGAACCGACGGGGAAGA
TCTGCCGGCGATGGGAGAACCGGCGGCGGCGAGGCCGGCTTCCGTCTTAC
CTGCCCGGGCGACAGCGGAGGAAAGAGTACTCGTCGTCGTCATCGAGGCT
TTGGCGCAGTACAAGCGGGAAGCTCAGGCAGCGCTGTGGTCGGTCAATGG
CGACGAGCGGTGGTGCGTCGTCAGTGACACTCTGTAG
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