mRNA_P-wetherbeei_contig5699.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5699.1.1
Unique NamemRNA_P-wetherbeei_contig5699.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5699.1.1 vs. uniprot
Match: A0A835YXG7_9STRA (DUF4097 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.990e-22
Identity = 107/360 (29.72%), Postives = 162/360 (45.00%), Query Frame = 1 
Query:  142 DLPVGQGGTLHVDIAASATADVDITTAWIEEASIDVYGESRWHDCDLHETGLTVAVDEEEGTISIRRSRDWPSDSDSDDDAMEEPRFRIVALLPQVFNIMLTVAAGNLSVGQTVEGDVTLQTGCGDVRVRHVQGHTVALLAAAGRVAVVEAQGNIHARAGADIEASLLQGQSVLLEQGALGGAVGDPPRGVGVPERRGVLVGGLYAERAVVRSSGPVRIESSHGRLTIEAGDDAPVAVASINGCAAVSVAGGDVAVHFDALFPGSASTLRSERGAVAVSASEDVAAFVTAETGGAHGGGSVHGGGRTPEILSPRFEGSVGAGFAVGRLRKA--EPRRRTGIFDRGSVGKIDLDGAREQRL 1215
            DL +  GG L VD+ +S  + V   + W ++    +   +    C   +  + V  D    T SI  +           +++      +V  LP+ F + + V  G L+    ++GD+ L+T  GD++V  ++G TV L A  G +A    +G I       IE +    +  LL  GA   A GD            V +GG+Y   A++     V ++SSHG + +  G    V +  ++G AAVS AGGDV ++FDAL  GS S + +  G+V+VSA ED +  V    G               +I +  F+G      A G +  A  EP R       G  GKID+ GAREQRL
Sbjct:   50 DLGIHSGGRLRVDLPSSCIS-VHAQSQWTDDLKASLVSTNGEQSCSPSDL-ICVTADATAQTCSITAAAG---------ESLSGHELHLV--LPESFGLWVHVNEGKLTTTGKLKGDIHLRTDSGDIQVATIRGETVCLAAPHGSIAADTLEGGIT------IECTTATVKK-LLSNGARISAAGD------------VAIGGMYDAHALIECPASVTVDSSHGHVEVRGGAR-EVRLLGVSGSAAVS-AGGDVQLNFDALQDGSRSEVATSDGSVSVSAPEDASCTVDVAAGDV-------------KIATAAFKGETSVTTASGTIAGAAPEPSRH------GGGGKIDMQGAREQRL 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5699.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXG7_9STRA3.990e-2229.72DUF4097 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5699contigP-wetherbeei_contig5699:3..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTY2
Model size1273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue8.6e-32
EggNOG OGs2CACM@1|root,2R08A@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF4098
Ec32 orthologEc-07_002820.1
Cds size1272
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.6876404-CDS-P-wetherbeei_contig5699:2..8481683186845.6876404-CDS-P-wetherbeei_contig5699:2..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5699 3..848 -
1683186845.698963-CDS-P-wetherbeei_contig5699:1204..16301683186845.698963-CDS-P-wetherbeei_contig5699:1204..1630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5699 1205..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5699.1.1prot_P-wetherbeei_contig5699.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5699 3..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5699.1.1

>prot_P-wetherbeei_contig5699.1.1 ID=prot_P-wetherbeei_contig5699.1.1|Name=mRNA_P-wetherbeei_contig5699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=424bp
MRSAALRSCRRLPRRTLGLVRAKTAVLRIGSAPRRGFALHTKLASYIDLP
VGQGGTLHVDIAASATADVDITTAWIEEASIDVYGESRWHDCDLHETGLT
VAVDEEEGTISIRRSRDWPSDSDSDDDAMEEPRFRIVALLPQVFNIMLTV
AAGNLSVGQTVEGDVTLQTGCGDVRVRHVQGHTVALLAAAGRVAVVEAQG
NIHARAGADIEASLLQGQSVLLEQGALGGAVGDPPRGVGVPERRGVLVGG
LYAERAVVRSSGPVRIESSHGRLTIEAGDDAPVAVASINGCAAVSVAGGD
VAVHFDALFPGSASTLRSERGAVAVSASEDVAAFVTAETGGAHGGGSVHG
GGRTPEILSPRFEGSVGAGFAVGRLRKAEPRRRTGIFDRGSVGKIDLDGA
REQRLLGFFGEGGGGGAEAAAAAA
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mRNA from alignment at P-wetherbeei_contig5699:3..1630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5699.1.1 ID=mRNA_P-wetherbeei_contig5699.1.1|Name=mRNA_P-wetherbeei_contig5699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1628bp|location=Sequence derived from alignment at P-wetherbeei_contig5699:3..1630- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCTGCGGCACTTCGCTCGTGCAGGCGCCTGCCTCGACGAACTTT
GGGGCTTGTGAGAGCGAAAACTGCAGTTTTGAGAATCGGAAGCGCGCCAA
GGCGAGGTTTTGCTCTCCATACCAAGCTCGCGAGTTACATTGATCTTCCT
GTGGGCCAAGGAGGCACTTTGCACGTTGATATTGCAGCTTCGGCGACGGC
CGACGTGGATATCACAACCGCGTGGATCGAAGAGGCCAGCATCGACGTCT
ACGGCGAGTCCAGATGGCATGACTGCGACCTTCATGAGACGGGACTGACC
GTGGCGGTGGATGAGGAGGAGGGGACGATCAGCATACGAAGAAGCCGCGA
CTGGCCCTCAGATTCGGACAGCGATGACGATGCGATGGAAGAGCCGCGGT
TCCGCATCGTCGCGCTTCTGCCTCAGGTCTGTCGTTTTTGTAGCTGCCTC
GTCGGTACAACCGAATTCCATTTTTCTGCTTGAATTGTGCTTGCTTCTTG
GCCGCATCATGGATCATCCGGGGGTTTCCAGGGAAGAAAATCGTTTTGGT
GCGCTCGTCATGGTTGGGACAACTTTAACGAATCCACCGCCTATGATTTC
GTGGCGAGAAGCCGTCATCATATCTCTGCCTTGCGAGATCGGTTGTACCT
TTTGGCTTTCCTTCCCTTCTTCCTTGCGCCTCTCCTCCTTGCTCTGACCA
ACCAACTAGAAATCGTCTCCTCCCGCCGCTTCATGCCCCCTTCCTCTTGT
TTCCCTCTCTCCCCTCTCCTCTCCGAGAAAAGGTGTTTAACATAATGCTG
ACGGTGGCGGCGGGCAATCTCTCGGTGGGGCAGACGGTCGAGGGTGACGT
GACACTCCAGACGGGCTGCGGCGACGTCCGCGTCCGCCACGTGCAGGGCC
ACACCGTCGCGCTGCTCGCCGCCGCCGGCCGTGTCGCCGTCGTCGAGGCG
CAGGGCAACATCCACGCTCGGGCCGGCGCAGACATCGAGGCCAGCCTGCT
GCAGGGGCAGAGCGTGCTGCTGGAACAGGGCGCGCTCGGCGGCGCCGTGG
GCGATCCGCCGAGGGGCGTCGGCGTGCCGGAGCGGCGCGGCGTGCTTGTC
GGCGGACTCTACGCGGAGCGGGCGGTTGTCCGAAGCTCCGGCCCTGTCCG
GATCGAGAGCAGCCATGGCCGGCTAACAATCGAGGCCGGCGACGACGCGC
CTGTCGCCGTCGCCAGTATCAACGGCTGCGCCGCCGTGTCGGTGGCCGGC
GGTGACGTGGCGGTGCACTTCGACGCGCTCTTTCCCGGGTCGGCGTCGAC
GCTGCGGTCGGAGCGGGGCGCCGTCGCCGTGTCGGCCTCCGAGGACGTCG
CTGCATTTGTCACGGCCGAAACCGGCGGTGCCCACGGCGGCGGCAGCGTC
CATGGTGGCGGGCGCACGCCGGAGATTTTGTCACCGCGCTTCGAGGGCAG
CGTCGGGGCGGGCTTCGCGGTGGGAAGGCTGCGGAAGGCGGAGCCGCGGC
GGCGGACTGGCATCTTCGACCGTGGCTCCGTCGGCAAGATTGACCTGGAC
GGGGCGCGGGAGCAGCGGCTACTGGGCTTCTTCGGAGAAGGCGGCGGCGG
AGGGGCGGAGGCAGCCGCGGCCGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5699:3..1630-

>mRNA_P-wetherbeei_contig5699.1.1 ID=mRNA_P-wetherbeei_contig5699.1.1|Name=mRNA_P-wetherbeei_contig5699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1272bp|location=Sequence derived from alignment at P-wetherbeei_contig5699:3..1630- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCTGCGGCACTTCGCTCGTGCAGGCGCCTGCCTCGACGAACTTT
GGGGCTTGTGAGAGCGAAAACTGCAGTTTTGAGAATCGGAAGCGCGCCAA
GGCGAGGTTTTGCTCTCCATACCAAGCTCGCGAGTTACATTGATCTTCCT
GTGGGCCAAGGAGGCACTTTGCACGTTGATATTGCAGCTTCGGCGACGGC
CGACGTGGATATCACAACCGCGTGGATCGAAGAGGCCAGCATCGACGTCT
ACGGCGAGTCCAGATGGCATGACTGCGACCTTCATGAGACGGGACTGACC
GTGGCGGTGGATGAGGAGGAGGGGACGATCAGCATACGAAGAAGCCGCGA
CTGGCCCTCAGATTCGGACAGCGATGACGATGCGATGGAAGAGCCGCGGT
TCCGCATCGTCGCGCTTCTGCCTCAGGTGTTTAACATAATGCTGACGGTG
GCGGCGGGCAATCTCTCGGTGGGGCAGACGGTCGAGGGTGACGTGACACT
CCAGACGGGCTGCGGCGACGTCCGCGTCCGCCACGTGCAGGGCCACACCG
TCGCGCTGCTCGCCGCCGCCGGCCGTGTCGCCGTCGTCGAGGCGCAGGGC
AACATCCACGCTCGGGCCGGCGCAGACATCGAGGCCAGCCTGCTGCAGGG
GCAGAGCGTGCTGCTGGAACAGGGCGCGCTCGGCGGCGCCGTGGGCGATC
CGCCGAGGGGCGTCGGCGTGCCGGAGCGGCGCGGCGTGCTTGTCGGCGGA
CTCTACGCGGAGCGGGCGGTTGTCCGAAGCTCCGGCCCTGTCCGGATCGA
GAGCAGCCATGGCCGGCTAACAATCGAGGCCGGCGACGACGCGCCTGTCG
CCGTCGCCAGTATCAACGGCTGCGCCGCCGTGTCGGTGGCCGGCGGTGAC
GTGGCGGTGCACTTCGACGCGCTCTTTCCCGGGTCGGCGTCGACGCTGCG
GTCGGAGCGGGGCGCCGTCGCCGTGTCGGCCTCCGAGGACGTCGCTGCAT
TTGTCACGGCCGAAACCGGCGGTGCCCACGGCGGCGGCAGCGTCCATGGT
GGCGGGCGCACGCCGGAGATTTTGTCACCGCGCTTCGAGGGCAGCGTCGG
GGCGGGCTTCGCGGTGGGAAGGCTGCGGAAGGCGGAGCCGCGGCGGCGGA
CTGGCATCTTCGACCGTGGCTCCGTCGGCAAGATTGACCTGGACGGGGCG
CGGGAGCAGCGGCTACTGGGCTTCTTCGGAGAAGGCGGCGGCGGAGGGGC
GGAGGCAGCCGCGGCCGCGGCG
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