mRNA_P-wetherbeei_contig56975.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56975.1.1
Unique NamemRNA_P-wetherbeei_contig56975.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56975.1.1 vs. uniprot
Match: A0A6G6WU44_9HYPH (Transposase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WU44_9HYPH)

HSP 1 Score: 57.4 bits (137), Expect = 1.050e-8
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   37 RGYTRGYDATAIAAKLEIVERFRKDGMRIFEIARRLGVSDTTIYNWRKQHAKPPRKAVEWEIAALRLEIAHMRARLDLLNPPSNGAE 297
            R + + +    IA KL++ E  R +G R++EIAR LGV+DTT YNW K+  KP  ++ + E+  LR E A ++  +  L   +  A+
Sbjct:    5 RRHVQSFTQAEIAEKLKVAETLRGEGKRVYEIARVLGVTDTTYYNWLKRAEKP--RSGDAELRRLRRENAQLKRAVKSLAGIAGAAQ 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56975.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G6WU44_9HYPH1.050e-836.78Transposase n=2 Tax=Hyphomicrobiales TaxID=356 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56975contigP-wetherbeei_contig56975:115..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123355.JHYO01000029_gene3713
PFAMsHTH_Tnp_1
Model size303
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07483
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.65e-05
EggNOG OGsCOG2963@1|root,COG2963@2|Bacteria,1MZ5C@1224|Proteobacteria,2UCUC@28211|Alphaproteobacteria,37181@31993|Methylocystaceae
DescriptionHelix-turn-helix domain
Cds size303
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.5255299-CDS-P-wetherbeei_contig56975:114..4171683186845.5255299-CDS-P-wetherbeei_contig56975:114..417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56975 115..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56975.1.1prot_P-wetherbeei_contig56975.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56975 115..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56975.1.1

>prot_P-wetherbeei_contig56975.1.1 ID=prot_P-wetherbeei_contig56975.1.1|Name=mRNA_P-wetherbeei_contig56975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MTTRSRAMPKQGRGYTRGYDATAIAAKLEIVERFRKDGMRIFEIARRLGV
SDTTIYNWRKQHAKPPRKAVEWEIAALRLEIAHMRARLDLLNPPSNGAEP
*
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mRNA from alignment at P-wetherbeei_contig56975:115..417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56975.1.1 ID=mRNA_P-wetherbeei_contig56975.1.1|Name=mRNA_P-wetherbeei_contig56975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig56975:115..417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCAGGTCCCGCGCCATGCCGAAACAGGGCCGTGGCTACACCCG
TGGCTATGACGCCACGGCCATTGCCGCAAAGCTGGAAATCGTCGAGCGGT
TCCGCAAAGACGGCATGCGCATATTTGAAATCGCCCGCCGCCTCGGTGTG
AGCGATACGACCATCTACAATTGGCGCAAGCAGCATGCGAAGCCACCGCG
CAAAGCCGTTGAATGGGAAATTGCAGCGCTCAGGCTTGAAATCGCTCATA
TGCGCGCCCGTCTCGACTTGCTCAACCCGCCCTCCAACGGGGCAGAACCG
TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56975:115..417+

>mRNA_P-wetherbeei_contig56975.1.1 ID=mRNA_P-wetherbeei_contig56975.1.1|Name=mRNA_P-wetherbeei_contig56975.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig56975:115..417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCAGGTCCCGCGCCATGCCGAAACAGGGCCGTGGCTACACCCG
TGGCTATGACGCCACGGCCATTGCCGCAAAGCTGGAAATCGTCGAGCGGT
TCCGCAAAGACGGCATGCGCATATTTGAAATCGCCCGCCGCCTCGGTGTG
AGCGATACGACCATCTACAATTGGCGCAAGCAGCATGCGAAGCCACCGCG
CAAAGCCGTTGAATGGGAAATTGCAGCGCTCAGGCTTGAAATCGCTCATA
TGCGCGCCCGTCTCGACTTGCTCAACCCGCCCTCCAACGGGGCAGAACCG
TGA
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