mRNA_P-wetherbeei_contig56944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A2G4J381_9BURK (ABC transporter substrate-binding protein n=5 Tax=root TaxID=1 RepID=A0A2G4J381_9BURK) HSP 1 Score: 77.8 bits (190), Expect = 2.790e-15 Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 4 DGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
DGTIKIG+VSP TG LA F +ADAF GI+ F+ DGL VGGKS+ +EIL EDSES AA
Sbjct: 51 DGTIKIGYVSPATGPLAAFASADAFIFEGIKTFLADGLRVGGKSYKVEILSEDSESDPTKAA 112
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A2T0L9I9_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia sp. BL18I3N2 TaxID=1938799 RepID=A0A2T0L9I9_9BURK) HSP 1 Score: 70.9 bits (172), Expect = 1.830e-14 Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
G T+KIG+VSPQTG LAPFG AD F I ++ +K+G+++GGKS+ + I+V+DS+S+ + AA
Sbjct: 37 GPRTLKIGYVSPQTGPLAPFGEADRFTIQQMQTALKNGIVIGGKSYPVSIVVKDSQSNPNRAA 99
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: UPI00131DDF19 (ABC transporter substrate-binding protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131DDF19) HSP 1 Score: 69.7 bits (169), Expect = 2.010e-12 Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query: 10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
T+KIG+VSPQTG LAPFG AD + I ++ KDGL VGGK +A+EI+++DS+S+ + A
Sbjct: 29 TLKIGYVSPQTGPLAPFGEADKWVIEQMKSAFKDGLTVGGKKYAVEIVLKDSQSNPNRA 87
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A5C5TNZ6_9HYPH (ABC transporter substrate-binding protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C5TNZ6_9HYPH) HSP 1 Score: 69.7 bits (169), Expect = 2.020e-12 Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query: 13 IKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
IKIG+VSPQTG LAPF AD F I G+ + K GL +GG++ A+EILV+DS+S+ + AA
Sbjct: 35 IKIGYVSPQTGPLAPFAEADNFVIGGVREAAKAGLSIGGRNQALEILVKDSQSNPNRAA 93
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A3N8KD56_9BURK (ABC transporter substrate-binding protein n=3 Tax=Burkholderia TaxID=32008 RepID=A0A3N8KD56_9BURK) HSP 1 Score: 69.3 bits (168), Expect = 2.780e-12 Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
G T+KIG+VSPQTG LAPFG AD F I ++ +K+G+ +GGK+F + ILV+DS+S+ + A
Sbjct: 37 GTRTLKIGYVSPQTGPLAPFGEADRFTIQQMQAALKNGIAIGGKTFPVSILVKDSQSNPNRA 98
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A6B1HQZ8_9PROT (ABC transporter substrate-binding protein n=5 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HQZ8_9PROT) HSP 1 Score: 69.3 bits (168), Expect = 2.810e-12 Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
T+KIGFVSPQTG LAPFG AD F +A + +K+G+ +G K++ +EI+ +DS+S+ + AA
Sbjct: 49 TVKIGFVSPQTGPLAPFGEADRFVLADARETLKNGIKIGSKTYPVEIVAKDSQSNPNRAA 108
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: UPI0019A0765D (ABC transporter substrate-binding protein n=3 Tax=unclassified Variovorax TaxID=663243 RepID=UPI0019A0765D) HSP 1 Score: 68.2 bits (165), Expect = 7.080e-12 Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query: 10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
TIKIGFVSPQTG LAPFG AD + + ++ KDG+ VGGK +A++I+++DS+S+ + A
Sbjct: 29 TIKIGFVSPQTGPLAPFGEADKWVVDQMKTAFKDGINVGGKKYAVQIVLKDSQSNPNRA 87
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A1G3HEC0_9RHOO (ABC transporter substrate-binding protein n=1 Tax=Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 TaxID=1802018 RepID=A0A1G3HEC0_9RHOO) HSP 1 Score: 68.2 bits (165), Expect = 7.110e-12 Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
TIKIG+VSPQTG LA FG DAF + ++ + G+ VGGKS+A+EI+V+DS+S+++ AA
Sbjct: 38 TIKIGYVSPQTGPLAVFGEPDAFTLTEMKKTLAGGIKVGGKSYAVEIVVKDSQSNSNRAA 97
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A6J4ZNJ7_9BURK (Peripla_BP_6 domain-containing protein n=33 Tax=Burkholderiaceae TaxID=119060 RepID=A0A6J4ZNJ7_9BURK) HSP 1 Score: 68.2 bits (165), Expect = 7.130e-12 Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
G T+KIG+VSPQTG LAPFG AD F I ++ +K+G+++GGK++ + I+V+DS+S+ + A
Sbjct: 37 GPRTLKIGYVSPQTGPLAPFGEADRFTIQQMQTTLKNGIVIGGKTYPVSIVVKDSQSNPNRA 98
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A7Y9R2H5_9BURK (Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Sphaerotilus montanus TaxID=522889 RepID=A0A7Y9R2H5_9BURK) HSP 1 Score: 68.2 bits (165), Expect = 7.160e-12 Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
TI+IG++SP TG LAPFG D + +A I++ +KDGL + G +A+E+LV DS+S+ + AA
Sbjct: 46 TIRIGYISPLTGPLAPFGETDKYTVAKIQELLKDGLTIHGTKYAVEVLVRDSQSNPNKAA 105 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56944.1.1 >prot_P-wetherbeei_contig56944.1.1 ID=prot_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEIback to top mRNA from alignment at P-wetherbeei_contig56944:24..212- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56944.1.1 ID=mRNA_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig56944:24..212- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56944:24..212- >mRNA_P-wetherbeei_contig56944.1.1 ID=mRNA_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig56944:24..212- (Phaeothamnion wetherbeei SAG_119_79)back to top |