mRNA_P-wetherbeei_contig56942.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56942.1.1
Unique NamemRNA_P-wetherbeei_contig56942.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: UPI0019BE4F85 (SRPBCC family protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019BE4F85)

HSP 1 Score: 86.7 bits (213), Expect = 2.680e-19
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 IASLPATA----QGVLNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANEEIGSVRTLTVRDGPG-FDEELLSFDAVDRTSSHRRIDRAPVP 288
            + +LP TA     G L+  + V+I+AS + VW+ VKD++GL KWHP  S+  +K+GAN +IGS RTLT+ DG   FDEELL F+   R  S++ +  +P+P
Sbjct:   13 LLALPGTALAAKPGYLHVKESVEIKASPAKVWNLVKDWNGLHKWHPAFSNTELKTGANNKIGSFRTLTLADGGAKFDEELLGFNEKKRLYSYQIVGDSPLP 113          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: A0A2V9YCA0_9BACT (SRPBCC family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9YCA0_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.070e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   34 LNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANEEIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            L   + V+I+A +  VW TVKDFDGL KWHP  S D + SG+N ++G+VR LT++DGP   E L++FD       +R + ++P+P
Sbjct:   26 LRVVETVEIKAPLEKVWATVKDFDGLSKWHPAFSGDELVSGSNGKVGAVRKLTIKDGPILIERLIAFDDAHHAYRYRIV-KSPLP 109          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: A0A534FD86_9GAMM (SRPBCC family protein n=9 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534FD86_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 6.940e-16
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 ASLPATAQGVLNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANEEIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            A L A  Q  L+  + V+I+A +  VW TVKDFDGL KWHP  + D + SG+N + G++R LT++DGP   E LL++D   + S    I  +P+P
Sbjct:   18 AGLAAPLQ-TLHVTETVEIKAPLDKVWATVKDFDGLAKWHPGFARDELISGSNGKAGAMRKLTIKDGPVITERLLAYDEA-KHSFRYTITESPLP 110          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: UPI0014809663 (SRPBCC family protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI0014809663)

HSP 1 Score: 71.2 bits (173), Expect = 1.350e-13
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   31 VLNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSG-ANEEIGSVRTLTVRDGPG-FDEELLSFDAVDRTSSHRRIDRAPVP 288
            ++ +Y    I   +  VW+ V+DF+GLP WHP  +D  I+ G AN E+G VR   + DG G   E LLS    DRT S+  +   P+P
Sbjct:    1 MIRAYSSTIIAVPVDQVWERVRDFNGLPNWHPAATDSRIEEGRANGEVGCVRNFALADGSGRIRETLLSLSHTDRTLSYDMLPNGPLP 88          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: A0A839E4L4_9PSEU (Uncharacterized protein YndB with AHSA1/START domain n=1 Tax=Halosaccharopolyspora lacisalsi TaxID=1000566 RepID=A0A839E4L4_9PSEU)

HSP 1 Score: 68.9 bits (167), Expect = 9.750e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   40 SYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANE-EIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            SY    I A    VW+ V+DFDGLP WHP ++   I+ G    E+G VR LT+ DG    E LL+ D V+R+ ++  + RAP P
Sbjct:    4 SYASTVIAAGAERVWEVVRDFDGLPTWHPGIASSEIEQGRGAAEVGCVRHLTLPDGGSIRERLLTLDDVERSYTYEIL-RAPFP 86          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: UPI00048EDA82 (SRPBCC family protein n=1 Tax=Pseudonocardia spinosispora TaxID=103441 RepID=UPI00048EDA82)

HSP 1 Score: 68.2 bits (165), Expect = 1.980e-12
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   58 IRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGAN-EEIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            + AS   VW+ V+ F+GLP WHPM+++  I+ G   +E G+VR LT+ DG    E LL  D  DR+ ++   D  P+P
Sbjct:   10 VPASADDVWEIVRQFNGLPSWHPMITESEIEDGRTAQEAGAVRNLTLADGAQVSERLLILDDDDRSYTYAFTDPGPLP 87          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: UPI0013D16C5F (SRPBCC family protein n=1 Tax=Fodinicola acaciae TaxID=2681555 RepID=UPI0013D16C5F)

HSP 1 Score: 67.4 bits (163), Expect = 3.950e-12
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   40 SYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANE-EIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            +Y    I A +  VWD V DF+GLP WHP ++D  + +GA+  EIG+VR LT+ DG    E L+S D  + T S+  ++ +P P
Sbjct:    4 AYSSAVIPAPVEAVWDLVSDFNGLPSWHPAITDSKLTAGASAAEIGAVRDLTLGDGGRVVERLVSLDNDEHTYSYVFVE-SPFP 86          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: UPI001ADBA2B7 (SRPBCC family protein n=3 Tax=unclassified Shimia TaxID=2630038 RepID=UPI001ADBA2B7)

HSP 1 Score: 67.4 bits (163), Expect = 4.040e-12
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   31 VLNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSG-ANEEIGSVRTLTVRDGPG-FDEELLSFDAVDRTSSHRRIDRAPVP 288
            ++ +Y    I   ++ VW+ V+DF+GLP WHP  +D  I+ G AN E+G VR   + DG G   E LL+   ++ T S+  +   P+P
Sbjct:    1 MIKAYSSTVIAVPVAQVWERVRDFNGLPSWHPAATDSKIEEGHANGEVGCVRNFALTDGSGRIRETLLAISDLEHTLSYDMLPNGPLP 88          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: A0A511CYU1_9PSEU (Polyketide cyclase n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511CYU1_9PSEU)

HSP 1 Score: 66.6 bits (161), Expect = 7.540e-12
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   43 YQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANEEIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRID 273
            Y    I AS   VW  V+DFDGLP WHP ++   + +G+  E+G++R LT+ DG    E LL  D  DR  ++  +D
Sbjct:    5 YASAVIPASADQVWQLVRDFDGLPGWHPAIATSELTAGSAAEVGAIRKLTLGDGAVVVERLLILDDADRRYTYEFVD 81          
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Match: A0A1I4B8I0_9PSEU (Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Amycolatopsis sacchari TaxID=115433 RepID=A0A1I4B8I0_9PSEU)

HSP 1 Score: 65.9 bits (159), Expect = 1.530e-11
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   58 IRASISTVWDTVKDFDGLPKWHPMLSDDLIKSGANE-EIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP 288
            + A ++ VW  V+DFDGLP WHP +    I+ GA   E+G+VR LT+ DG    E+LL  D VDR+ +++ I+  P P
Sbjct:   10 VPADVAEVWAVVRDFDGLPVWHPGIESSEIEPGAVAGEVGAVRRLTLADGGTVREKLLRLDDVDRSYTYQIIE-GPFP 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56942.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019BE4F852.680e-1945.54SRPBCC family protein n=1 Tax=Prolixibacteraceae b... [more]
A0A2V9YCA0_9BACT1.070e-1744.71SRPBCC family protein n=1 Tax=Acidobacteria bacter... [more]
A0A534FD86_9GAMM6.940e-1643.16SRPBCC family protein n=9 Tax=Gammaproteobacteria ... [more]
UPI00148096631.350e-1339.77SRPBCC family protein n=1 Tax=Ruegeria arenilitori... [more]
A0A839E4L4_9PSEU9.750e-1342.86Uncharacterized protein YndB with AHSA1/START doma... [more]
UPI00048EDA821.980e-1241.03SRPBCC family protein n=1 Tax=Pseudonocardia spino... [more]
UPI0013D16C5F3.950e-1241.67SRPBCC family protein n=1 Tax=Fodinicola acaciae T... [more]
UPI001ADBA2B74.040e-1236.36SRPBCC family protein n=3 Tax=unclassified Shimia ... [more]
A0A511CYU1_9PSEU7.540e-1240.26Polyketide cyclase n=1 Tax=Pseudonocardia asacchar... [more]
A0A1I4B8I0_9PSEU1.530e-1143.59Polyketide cyclase / dehydrase and lipid transport... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56942contigP-wetherbeei_contig56942:172..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123073.KB899243_gene495
PFAMsPolyketide_cyc2
Model size288
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.66e-15
EggNOG OGsCOG3832@1|root,COG3832@2|Bacteria,1RD9A@1224|Proteobacteria,1S95U@1236|Gammaproteobacteria,1XC4A@135614|Xanthomonadales
DescriptionPolyketide cyclase / dehydrase and lipid transport
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.2479358-CDS-P-wetherbeei_contig56942:171..4591683186845.2479358-CDS-P-wetherbeei_contig56942:171..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56942 172..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56942.1.1prot_P-wetherbeei_contig56942.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56942 172..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56942.1.1

>prot_P-wetherbeei_contig56942.1.1 ID=prot_P-wetherbeei_contig56942.1.1|Name=mRNA_P-wetherbeei_contig56942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
IASLPATAQGVLNSYQFVDIRASISTVWDTVKDFDGLPKWHPMLSDDLIK
SGANEEIGSVRTLTVRDGPGFDEELLSFDAVDRTSSHRRIDRAPVP
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mRNA from alignment at P-wetherbeei_contig56942:172..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56942.1.1 ID=mRNA_P-wetherbeei_contig56942.1.1|Name=mRNA_P-wetherbeei_contig56942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig56942:172..459+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGCGAGCTTGCCAGCGACCGCGCAAGGCGTTCTGAATTCTTATCAATT CGTCGACATCAGGGCGTCGATCTCTACAGTCTGGGACACGGTGAAGGACT TTGACGGCCTGCCAAAGTGGCACCCGATGCTTTCCGATGATCTGATCAAG TCCGGTGCCAACGAAGAGATCGGTTCAGTGCGCACGCTCACGGTAAGGGA TGGCCCGGGTTTCGACGAAGAGTTGCTGTCCTTCGATGCGGTTGACAGAA CGTCCAGCCACAGGCGCATTGATCGGGCGCCCGTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56942:172..459+

>mRNA_P-wetherbeei_contig56942.1.1 ID=mRNA_P-wetherbeei_contig56942.1.1|Name=mRNA_P-wetherbeei_contig56942.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig56942:172..459+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGCGAGCTTGCCAGCGACCGCGCAAGGCGTTCTGAATTCTTATCAATT
CGTCGACATCAGGGCGTCGATCTCTACAGTCTGGGACACGGTGAAGGACT
TTGACGGCCTGCCAAAGTGGCACCCGATGCTTTCCGATGATCTGATCAAG
TCCGGTGCCAACGAAGAGATCGGTTCAGTGCGCACGCTCACGGTAAGGGA
TGGCCCGGGTTTCGACGAAGAGTTGCTGTCCTTCGATGCGGTTGACAGAA
CGTCCAGCCACAGGCGCATTGATCGGGCGCCCGTGCCG
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