mRNA_P-wetherbeei_contig56919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56919.1.1
Unique NamemRNA_P-wetherbeei_contig56919.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A5C7NWT5_9PROT (50S ribosomal protein L4 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NWT5_9PROT)

HSP 1 Score: 281 bits (720), Expect = 1.570e-94
Identity = 142/171 (83.04%), Postives = 151/171 (88.30%), Query Frame = 1
Query:    1 ALGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            A GEVEIDDAV+ADIFGR +RKDILARAVNWQLAKRR+G HKTKEIGD+ GTTKKPY QKGTGNARQGSLRSPQFRGGATIFGPV RSHAHDLPKKVRKLALK ALSAK  +GKLV+W   +A GKTKDL+ +  KLGW SVLVIDG EVN KFALAARNIP VDVLPQQG
Sbjct:   12 AAGEVEIDDAVYADIFGREIRKDILARAVNWQLAKRRAGTHKTKEIGDVQGTTKKPYNQKGTGNARQGSLRSPQFRGGATIFGPVPRSHAHDLPKKVRKLALKTALSAKQAEGKLVIWSGADATGKTKDLSAKLDKLGWKSVLVIDGAEVNEKFALAARNIPGVDVLPQQG 182          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A4R6WTU2_9PROT (50S ribosomal protein L4 n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WTU2_9PROT)

HSP 1 Score: 258 bits (658), Expect = 4.310e-85
Identity = 131/169 (77.51%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            GE+E+DD  F DIFGR VRKDILAR VNWQLAKRR+G HKTKEIGD+SGTTKKPY+QKGTG ARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVR L LK ALSAK K+GKLVV        KTKD+AK+FA LGW SVL+I+G  V   FA AARNIP+VDVLPQQG
Sbjct:   14 GEIELDDTTFNDIFGRPVRKDILARVVNWQLAKRRAGTHKTKEIGDVSGTTKKPYSQKGTGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRTLGLKTALSAKAKEGKLVVLDGVGPDAKTKDVAKKFAALGWKSVLLIEGKAVTEGFARAARNIPHVDVLPQQG 182          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: K9HFU0_9PROT (50S ribosomal protein L4 n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9HFU0_9PROT)

HSP 1 Score: 228 bits (580), Expect = 2.860e-73
Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = 1
Query:    7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGE-TNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            G VE+ +    DIFG  VR D+L R V WQLAKR++G HKTK I +ISGTTKKP+ QKGTG+ARQGS+RSPQFRGGATIFGPVVRSHAHDLPKKVRKL LK ALSAK KDGKLVV    T+  GKTKDL KQ A LGWSS L+IDG  VN  FA AARNI  VDVLPQQG
Sbjct:   14 GSVELAE----DIFGLDVRADLLHRVVRWQLAKRQAGTHKTKGISEISGTTKKPFRQKGTGHARQGSMRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKLVVLDTATSESGKTKDLVKQLAALGWSSALIIDGEAVNDGFARAARNIVGVDVLPQQG 179          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A5J6MZ50_9PROT (50S ribosomal protein L4 n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6MZ50_9PROT)

HSP 1 Score: 228 bits (580), Expect = 2.860e-73
Identity = 118/171 (69.01%), Postives = 134/171 (78.36%), Query Frame = 1
Query:    4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAG-GKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            +GE+++ D    ++FG  VR+DILARAVNWQLAKRR G HKTK IGD+ GTTKKPY QKGTG+ARQGSLRSPQFRGGA IFGPVVRSH HDLPKKVRKLALK ALS+K  DGKLVV     A   KTK+LA +  K GW SVL+IDGP V+  F  A  NIPN+D+LPQQG
Sbjct:   13 VGEIDLSD----EVFGLPVRRDILARAVNWQLAKRRQGTHKTKTIGDVQGTTKKPYKQKGTGSARQGSLRSPQFRGGAVIFGPVVRSHEHDLPKKVRKLALKTALSSKQADGKLVVVDSLAAAKAKTKELAGKLGKFGWQSVLLIDGPAVDDNFRRATANIPNLDLLPQQG 179          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: UPI00115D1337 (50S ribosomal protein L4 n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D1337)

HSP 1 Score: 226 bits (577), Expect = 8.170e-73
Identity = 118/159 (74.21%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   40 DIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            D+FG  VR DIL R VNWQLAKR++G HKTK I +ISGTTKKPY QKGTG ARQGSLRSPQFRGGAT+FGPVVRSHAHDLPKKVRKLALK ALSAK  DGKLV+         KTK+LA +FA LGW+SVLVIDG EVN  FA A++N+P+VDVLPQQG
Sbjct:   21 DVFGLPVRTDILFRMVNWQLAKRQAGTHKTKIISEISGTTKKPYKQKGTGRARQGSLRSPQFRGGATVFGPVVRSHAHDLPKKVRKLALKTALSAKAADGKLVILDAARLDAPKTKELAGRFATLGWNSVLVIDGTEVNINFARASQNLPHVDVLPQQG 179          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: S9TH18_MAGFU (50S ribosomal protein L4 n=3 Tax=Magnetospirillum TaxID=13134 RepID=S9TH18_MAGFU)

HSP 1 Score: 226 bits (576), Expect = 1.160e-72
Identity = 125/171 (73.10%), Postives = 136/171 (79.53%), Query Frame = 1
Query:    4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETN-AGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            +GE+E+ + VF    G  VR DILAR VNWQLAKRRSGNHKTK I +ISGTTKKP+AQKG G ARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALK ALSAK  DGKL V    N A  KT++LA +   LGWSSVLVIDG  V+  FALA+RNIP VDVLPQ G
Sbjct:   13 VGEIELAETVF----GLPVRTDILARMVNWQLAKRRSGNHKTKGIKEISGTTKKPFAQKGGGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAGDGKLFVLDAANVATPKTRELAARLNALGWSSVLVIDGAAVDDNFALASRNIPYVDVLPQAG 179          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A8TZL5_9PROT (50S ribosomal protein L4 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A8TZL5_9PROT)

HSP 1 Score: 226 bits (575), Expect = 1.640e-72
Identity = 120/170 (70.59%), Postives = 135/170 (79.41%), Query Frame = 1
Query:    7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAG-GKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            GE+++DD+    IFG   R+DILAR VNWQLAKRRSGNHKTK I +ISGTTKKP+ QKGTG ARQGS+R+ QFRGG T+ GPVVRSHAHDLPKKVRKL LK ALSAK K G+L+V    +    KTK LA +F KLGW SVLVIDGPE+N  FA AARNIP VDVLPQQG
Sbjct:   14 GEIDLDDS----IFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTTKKPFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSGQLIVLDAASTDEAKTKLLAAKFEKLGWQSVLVIDGPELNEGFARAARNIPRVDVLPQQG 179          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A286FZW3_9PROT (50S ribosomal protein L4 n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286FZW3_9PROT)

HSP 1 Score: 225 bits (573), Expect = 3.200e-72
Identity = 119/169 (70.41%), Postives = 134/169 (79.29%), Query Frame = 1
Query:    7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            G VE+ +    DIFG  VR D+L R V WQLAKR++G HKTK I +ISGTTKKPY QKGTG+ARQGSLRSPQ+RGGATIFGPVVRSHAHDLPKKVRKL LK ALSAK KDGKLVV        KTK+LA +F  LGWSSVL+IDG +VN +F+ AARNI  +DVLPQQG
Sbjct:   14 GSVELAE----DIFGLDVRGDLLHRVVRWQLAKRQAGTHKTKGISEISGTTKKPYKQKGTGHARQGSLRSPQYRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKLVVLDTAADVAKTKELAAKFKALGWSSVLIIDGEQVNEQFSRAARNIVGIDVLPQQG 178          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A8J3E4S6_9PROT (50S ribosomal protein L4 n=2 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E4S6_9PROT)

HSP 1 Score: 225 bits (573), Expect = 3.540e-72
Identity = 119/159 (74.84%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   40 DIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            +IFG  VRKD+LAR VN+QLAKRR+G HKTK IGDI+GTTKKPY QKGTG ARQGSLRSPQFRGGA IFGPVVRSHAHDL KKVRKLALK ALSAK  +GKL+V         KTK L ++F KLGW+SVL+IDGPEV+  FA AARNIP VDVLPQQG
Sbjct:   23 EIFGLEVRKDLLARMVNYQLAKRRAGTHKTKLIGDIAGTTKKPYKQKGTGRARQGSLRSPQFRGGAVIFGPVVRSHAHDLQKKVRKLALKTALSAKQAEGKLIVLDRAAVETPKTKALVERFEKLGWTSVLIIDGPEVDEGFARAARNIPKVDVLPQQG 181          
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: RL4_MAGSA (50S ribosomal protein L4 n=6 Tax=Magnetospirillum TaxID=13134 RepID=RL4_MAGSA)

HSP 1 Score: 224 bits (571), Expect = 6.670e-72
Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 1
Query:    4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
            +GE+E+ D    +IFG  VR DIL RAVNWQLAKR+SGNHKTK I +ISGTTKKP+AQKG G ARQGSLRS QFRGG+TIFGPVVRSHAHDLPKKVRKLALK ALSAK  DGKL+V    +AG  KTKDLA +  KLG SSVL IDG  V+  FALA+RNIP VDVLP QG
Sbjct:   13 VGEIELAD----EIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIVVDAASAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQG 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NWT5_9PROT1.570e-9483.0450S ribosomal protein L4 n=1 Tax=Rhodospirillaceae... [more]
A0A4R6WTU2_9PROT4.310e-8577.5150S ribosomal protein L4 n=1 Tax=Dongia mobilis Ta... [more]
K9HFU0_9PROT2.860e-7372.3550S ribosomal protein L4 n=1 Tax=Caenispirillum sa... [more]
A0A5J6MZ50_9PROT2.860e-7369.0150S ribosomal protein L4 n=2 Tax=Hypericibacter Ta... [more]
UPI00115D13378.170e-7374.2150S ribosomal protein L4 n=1 Tax=Telmatospirillum ... [more]
S9TH18_MAGFU1.160e-7273.1050S ribosomal protein L4 n=3 Tax=Magnetospirillum ... [more]
A8TZL5_9PROT1.640e-7270.5950S ribosomal protein L4 n=2 Tax=Alphaproteobacter... [more]
A0A286FZW3_9PROT3.200e-7270.4150S ribosomal protein L4 n=1 Tax=Caenispirillum bi... [more]
A0A8J3E4S6_9PROT3.540e-7274.8450S ribosomal protein L4 n=2 Tax=Aliidongia dinghu... [more]
RL4_MAGSA6.670e-7272.5150S ribosomal protein L4 n=6 Tax=Magnetospirillum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56919contigP-wetherbeei_contig56919:2..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380391.JIAS01000006_gene2569
Preferred namerplD
PFAMsRibosomal_L4
Model size513
Max annot lvl204441|Rhodospirillales
KEGG koko:K02926
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-90
EggNOG OGsCOG0088@1|root,COG0088@2|Bacteria,1MXPF@1224|Proteobacteria,2TRUT@28211|Alphaproteobacteria,2JQ5X@204441|Rhodospirillales
DescriptionForms part of the polypeptide exit tunnel
Cds size513
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.9258957-CDS-P-wetherbeei_contig56919:1..5141683186844.9258957-CDS-P-wetherbeei_contig56919:1..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56919 2..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56919.1.1prot_P-wetherbeei_contig56919.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56919 2..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56919.1.1

>prot_P-wetherbeei_contig56919.1.1 ID=prot_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
ALGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDIS
GTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKL
ALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEV
NTKFALAARNIPNVDVLPQQG
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mRNA from alignment at P-wetherbeei_contig56919:2..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56919.1.1 ID=mRNA_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56919:2..514- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGGCGAAGTCGAGATCGACGACGCCGTGTTCGCCGACATCTTCGG TCGCACCGTGCGCAAGGACATCCTGGCGCGCGCCGTCAACTGGCAGCTGG CCAAGCGCCGGTCCGGCAACCACAAGACCAAGGAAATCGGCGACATCTCC GGCACCACCAAGAAGCCGTATGCCCAGAAGGGCACCGGCAACGCCCGCCA GGGCAGCTTGCGTTCGCCGCAGTTCCGCGGTGGTGCGACCATTTTCGGCC CGGTCGTGCGCAGCCACGCCCATGACCTGCCGAAGAAGGTGCGCAAGCTG GCGCTGAAGAACGCGCTCAGCGCCAAGCACAAGGACGGCAAGCTGGTCGT GTGGGGCGAGACCAACGCCGGCGGCAAGACCAAGGACCTGGCCAAGCAGT TCGCCAAGCTCGGCTGGAGCTCGGTGCTGGTCATCGACGGTCCGGAAGTG AACACCAAGTTCGCGCTGGCCGCGCGCAACATCCCGAACGTGGATGTGCT GCCGCAGCAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56919:2..514-

>mRNA_P-wetherbeei_contig56919.1.1 ID=mRNA_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56919:2..514- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGGCGAAGTCGAGATCGACGACGCCGTGTTCGCCGACATCTTCGG
TCGCACCGTGCGCAAGGACATCCTGGCGCGCGCCGTCAACTGGCAGCTGG
CCAAGCGCCGGTCCGGCAACCACAAGACCAAGGAAATCGGCGACATCTCC
GGCACCACCAAGAAGCCGTATGCCCAGAAGGGCACCGGCAACGCCCGCCA
GGGCAGCTTGCGTTCGCCGCAGTTCCGCGGTGGTGCGACCATTTTCGGCC
CGGTCGTGCGCAGCCACGCCCATGACCTGCCGAAGAAGGTGCGCAAGCTG
GCGCTGAAGAACGCGCTCAGCGCCAAGCACAAGGACGGCAAGCTGGTCGT
GTGGGGCGAGACCAACGCCGGCGGCAAGACCAAGGACCTGGCCAAGCAGT
TCGCCAAGCTCGGCTGGAGCTCGGTGCTGGTCATCGACGGTCCGGAAGTG
AACACCAAGTTCGCGCTGGCCGCGCGCAACATCCCGAACGTGGATGTGCT
GCCGCAGCAGGGC
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