mRNA_P-wetherbeei_contig56919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A5C7NWT5_9PROT (50S ribosomal protein L4 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NWT5_9PROT) HSP 1 Score: 281 bits (720), Expect = 1.570e-94 Identity = 142/171 (83.04%), Postives = 151/171 (88.30%), Query Frame = 1
Query: 1 ALGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
A GEVEIDDAV+ADIFGR +RKDILARAVNWQLAKRR+G HKTKEIGD+ GTTKKPY QKGTGNARQGSLRSPQFRGGATIFGPV RSHAHDLPKKVRKLALK ALSAK +GKLV+W +A GKTKDL+ + KLGW SVLVIDG EVN KFALAARNIP VDVLPQQG
Sbjct: 12 AAGEVEIDDAVYADIFGREIRKDILARAVNWQLAKRRAGTHKTKEIGDVQGTTKKPYNQKGTGNARQGSLRSPQFRGGATIFGPVPRSHAHDLPKKVRKLALKTALSAKQAEGKLVIWSGADATGKTKDLSAKLDKLGWKSVLVIDGAEVNEKFALAARNIPGVDVLPQQG 182
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A4R6WTU2_9PROT (50S ribosomal protein L4 n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WTU2_9PROT) HSP 1 Score: 258 bits (658), Expect = 4.310e-85 Identity = 131/169 (77.51%), Postives = 142/169 (84.02%), Query Frame = 1
Query: 7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
GE+E+DD F DIFGR VRKDILAR VNWQLAKRR+G HKTKEIGD+SGTTKKPY+QKGTG ARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVR L LK ALSAK K+GKLVV KTKD+AK+FA LGW SVL+I+G V FA AARNIP+VDVLPQQG
Sbjct: 14 GEIELDDTTFNDIFGRPVRKDILARVVNWQLAKRRAGTHKTKEIGDVSGTTKKPYSQKGTGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRTLGLKTALSAKAKEGKLVVLDGVGPDAKTKDVAKKFAALGWKSVLLIEGKAVTEGFARAARNIPHVDVLPQQG 182
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: K9HFU0_9PROT (50S ribosomal protein L4 n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9HFU0_9PROT) HSP 1 Score: 228 bits (580), Expect = 2.860e-73 Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = 1
Query: 7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGE-TNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
G VE+ + DIFG VR D+L R V WQLAKR++G HKTK I +ISGTTKKP+ QKGTG+ARQGS+RSPQFRGGATIFGPVVRSHAHDLPKKVRKL LK ALSAK KDGKLVV T+ GKTKDL KQ A LGWSS L+IDG VN FA AARNI VDVLPQQG
Sbjct: 14 GSVELAE----DIFGLDVRADLLHRVVRWQLAKRQAGTHKTKGISEISGTTKKPFRQKGTGHARQGSMRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKLVVLDTATSESGKTKDLVKQLAALGWSSALIIDGEAVNDGFARAARNIVGVDVLPQQG 179
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A5J6MZ50_9PROT (50S ribosomal protein L4 n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6MZ50_9PROT) HSP 1 Score: 228 bits (580), Expect = 2.860e-73 Identity = 118/171 (69.01%), Postives = 134/171 (78.36%), Query Frame = 1
Query: 4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAG-GKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
+GE+++ D ++FG VR+DILARAVNWQLAKRR G HKTK IGD+ GTTKKPY QKGTG+ARQGSLRSPQFRGGA IFGPVVRSH HDLPKKVRKLALK ALS+K DGKLVV A KTK+LA + K GW SVL+IDGP V+ F A NIPN+D+LPQQG
Sbjct: 13 VGEIDLSD----EVFGLPVRRDILARAVNWQLAKRRQGTHKTKTIGDVQGTTKKPYKQKGTGSARQGSLRSPQFRGGAVIFGPVVRSHEHDLPKKVRKLALKTALSSKQADGKLVVVDSLAAAKAKTKELAGKLGKFGWQSVLLIDGPAVDDNFRRATANIPNLDLLPQQG 179
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: UPI00115D1337 (50S ribosomal protein L4 n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D1337) HSP 1 Score: 226 bits (577), Expect = 8.170e-73 Identity = 118/159 (74.21%), Postives = 131/159 (82.39%), Query Frame = 1
Query: 40 DIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
D+FG VR DIL R VNWQLAKR++G HKTK I +ISGTTKKPY QKGTG ARQGSLRSPQFRGGAT+FGPVVRSHAHDLPKKVRKLALK ALSAK DGKLV+ KTK+LA +FA LGW+SVLVIDG EVN FA A++N+P+VDVLPQQG
Sbjct: 21 DVFGLPVRTDILFRMVNWQLAKRQAGTHKTKIISEISGTTKKPYKQKGTGRARQGSLRSPQFRGGATVFGPVVRSHAHDLPKKVRKLALKTALSAKAADGKLVILDAARLDAPKTKELAGRFATLGWNSVLVIDGTEVNINFARASQNLPHVDVLPQQG 179
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: S9TH18_MAGFU (50S ribosomal protein L4 n=3 Tax=Magnetospirillum TaxID=13134 RepID=S9TH18_MAGFU) HSP 1 Score: 226 bits (576), Expect = 1.160e-72 Identity = 125/171 (73.10%), Postives = 136/171 (79.53%), Query Frame = 1
Query: 4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETN-AGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
+GE+E+ + VF G VR DILAR VNWQLAKRRSGNHKTK I +ISGTTKKP+AQKG G ARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALK ALSAK DGKL V N A KT++LA + LGWSSVLVIDG V+ FALA+RNIP VDVLPQ G
Sbjct: 13 VGEIELAETVF----GLPVRTDILARMVNWQLAKRRSGNHKTKGIKEISGTTKKPFAQKGGGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAGDGKLFVLDAANVATPKTRELAARLNALGWSSVLVIDGAAVDDNFALASRNIPYVDVLPQAG 179
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A8TZL5_9PROT (50S ribosomal protein L4 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A8TZL5_9PROT) HSP 1 Score: 226 bits (575), Expect = 1.640e-72 Identity = 120/170 (70.59%), Postives = 135/170 (79.41%), Query Frame = 1
Query: 7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAG-GKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
GE+++DD+ IFG R+DILAR VNWQLAKRRSGNHKTK I +ISGTTKKP+ QKGTG ARQGS+R+ QFRGG T+ GPVVRSHAHDLPKKVRKL LK ALSAK K G+L+V + KTK LA +F KLGW SVLVIDGPE+N FA AARNIP VDVLPQQG
Sbjct: 14 GEIDLDDS----IFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTTKKPFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSGQLIVLDAASTDEAKTKLLAAKFEKLGWQSVLVIDGPELNEGFARAARNIPRVDVLPQQG 179
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A286FZW3_9PROT (50S ribosomal protein L4 n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286FZW3_9PROT) HSP 1 Score: 225 bits (573), Expect = 3.200e-72 Identity = 119/169 (70.41%), Postives = 134/169 (79.29%), Query Frame = 1
Query: 7 GEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGGKTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
G VE+ + DIFG VR D+L R V WQLAKR++G HKTK I +ISGTTKKPY QKGTG+ARQGSLRSPQ+RGGATIFGPVVRSHAHDLPKKVRKL LK ALSAK KDGKLVV KTK+LA +F LGWSSVL+IDG +VN +F+ AARNI +DVLPQQG
Sbjct: 14 GSVELAE----DIFGLDVRGDLLHRVVRWQLAKRQAGTHKTKGISEISGTTKKPYKQKGTGHARQGSLRSPQYRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKLVVLDTAADVAKTKELAAKFKALGWSSVLIIDGEQVNEQFSRAARNIVGIDVLPQQG 178
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: A0A8J3E4S6_9PROT (50S ribosomal protein L4 n=2 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E4S6_9PROT) HSP 1 Score: 225 bits (573), Expect = 3.540e-72 Identity = 119/159 (74.84%), Postives = 131/159 (82.39%), Query Frame = 1
Query: 40 DIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
+IFG VRKD+LAR VN+QLAKRR+G HKTK IGDI+GTTKKPY QKGTG ARQGSLRSPQFRGGA IFGPVVRSHAHDL KKVRKLALK ALSAK +GKL+V KTK L ++F KLGW+SVL+IDGPEV+ FA AARNIP VDVLPQQG
Sbjct: 23 EIFGLEVRKDLLARMVNYQLAKRRAGTHKTKLIGDIAGTTKKPYKQKGTGRARQGSLRSPQFRGGAVIFGPVVRSHAHDLQKKVRKLALKTALSAKQAEGKLIVLDRAAVETPKTKALVERFEKLGWTSVLIIDGPEVDEGFARAARNIPKVDVLPQQG 181
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Match: RL4_MAGSA (50S ribosomal protein L4 n=6 Tax=Magnetospirillum TaxID=13134 RepID=RL4_MAGSA) HSP 1 Score: 224 bits (571), Expect = 6.670e-72 Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 1
Query: 4 LGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISGTTKKPYAQKGTGNARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKNALSAKHKDGKLVVWGETNAGG-KTKDLAKQFAKLGWSSVLVIDGPEVNTKFALAARNIPNVDVLPQQG 513
+GE+E+ D +IFG VR DIL RAVNWQLAKR+SGNHKTK I +ISGTTKKP+AQKG G ARQGSLRS QFRGG+TIFGPVVRSHAHDLPKKVRKLALK ALSAK DGKL+V +AG KTKDLA + KLG SSVL IDG V+ FALA+RNIP VDVLP QG
Sbjct: 13 VGEIELAD----EIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIVVDAASAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQG 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56919.1.1 >prot_P-wetherbeei_contig56919.1.1 ID=prot_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp ALGEVEIDDAVFADIFGRTVRKDILARAVNWQLAKRRSGNHKTKEIGDISback to top mRNA from alignment at P-wetherbeei_contig56919:2..514- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56919.1.1 ID=mRNA_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56919:2..514- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56919:2..514- >mRNA_P-wetherbeei_contig56919.1.1 ID=mRNA_P-wetherbeei_contig56919.1.1|Name=mRNA_P-wetherbeei_contig56919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56919:2..514- (Phaeothamnion wetherbeei SAG_119_79)back to top |