mRNA_P-wetherbeei_contig56915.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56915.1.1
Unique NamemRNA_P-wetherbeei_contig56915.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A7X9KJ75_9ACTN ((R)-citramalate synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KJ75_9ACTN)

HSP 1 Score: 318 bits (816), Expect = 1.230e-104
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDDATLRNLLDANTSAVCIVAKSWDYHVL ALQTTL+EGEAMIADSVA+L   GR+VLVDMEHFFDG+KHNPEFALRALEAA+VKGA+HVVLCDTNGGSLP+EVE+IV DVHRHVG DVIIGIHCHDDTGCAVANSMAAVRAG RHVQGTLNGLGERTGNCNLTTVI
Sbjct:   90 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLEALQTTLEEGEAMIADSVAYLHGAGRRVLVDMEHFFDGYKHNPEFALRALEAAIVKGASHVVLCDTNGGSLPYEVEAIVGDVHRHVGGDVIIGIHCHDDTGCAVANSMAAVRAGGRHVQGTLNGLGERTGNCNLTTVI 259
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A6J6E2P6_9ZZZZ ((R)-citramalate synthase n=2 Tax=root TaxID=1 RepID=A0A6J6E2P6_9ZZZZ)

HSP 1 Score: 315 bits (807), Expect = 3.590e-103
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 1 
Query:    1 EGKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            +GKVDDD TLRNLLDANTSAVCIVAKSWDYHVL ALQTTLDEGEAMIADSVAFL   GR+V+VDMEHFFDG+K NPEF+LRALEAAVVKGA+HVVLCDTNGGSLP E+E IVADV+RHVGNDV IGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI
Sbjct:  102 KGKVDDDVTLRNLLDANTSAVCIVAKSWDYHVLEALQTTLDEGEAMIADSVAFLTGAGRRVMVDMEHFFDGYKRNPEFSLRALEAAVVKGASHVVLCDTNGGSLPHEIEQIVADVYRHVGNDVTIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 272
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A6J7I192_9ZZZZ ((R)-citramalate synthase n=2 Tax=root TaxID=1 RepID=A0A6J7I192_9ZZZZ)

HSP 1 Score: 314 bits (805), Expect = 9.730e-103
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDDATLRNLLDANT+AVCIVAKSWDYHV+ ALQTTLDEGEAMIADSVAFL A GR+V+VDMEHFFDG+KHNPEFALRALEAAVVKGA+HVVLCDTNGGSLP EV +IVADV RHVG+DVIIGIHCHDDTGCAVANSMAAV AGARHVQGTLNGLGERTGNCNLTTVI
Sbjct:  110 GKVDDDATLRNLLDANTAAVCIVAKSWDYHVIEALQTTLDEGEAMIADSVAFLHAAGRRVMVDMEHFFDGYKHNPEFALRALEAAVVKGASHVVLCDTNGGSLPHEVAAIVADVQRHVGSDVIIGIHCHDDTGCAVANSMAAVLAGARHVQGTLNGLGERTGNCNLTTVI 279
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A6I3C8B0_9ACTN ((R)-citramalate synthase n=2 Tax=root TaxID=1 RepID=A0A6I3C8B0_9ACTN)

HSP 1 Score: 309 bits (792), Expect = 5.650e-101
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDDATLRNL+DA TSAVCIVAKSWDYHVLNALQTTL+EG AMI+DSV FL  +GR+VLVDMEHFFDG+K NPEFALRALEAAV+KGA+H+VLCDTNGGSLP EVE+IV  VHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARH+QGTLNGLGERTGNCNLTTVI
Sbjct:   98 GKVDDDATLRNLIDAGTSAVCIVAKSWDYHVLNALQTTLEEGAAMISDSVEFLVGHGRRVLVDMEHFFDGYKANPEFALRALEAAVIKGASHLVLCDTNGGSLPHEVEAIVGAVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHIQGTLNGLGERTGNCNLTTVI 267
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A6I3WMA4_9ACTN ((R)-citramalate synthase n=2 Tax=root TaxID=1 RepID=A0A6I3WMA4_9ACTN)

HSP 1 Score: 307 bits (787), Expect = 3.030e-100
Identity = 148/171 (86.55%), Postives = 162/171 (94.74%), Query Frame = 1 
Query:    1 EGKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            +GKVDDDATLRNL+DA T AVCIVAKSWDYHVLNALQTTLDEG AMI+DSV +LAA+G++VLVDMEHFFDG+K NPEFALRALEAA++KGA+HVVLCDTNGGSLP EV+SIV  VHRHVG+DVIIGIHCHDDTGCAVANSMAAV AGARH+QGTLNGLGERTGNCNLTTVI
Sbjct:   95 KGKVDDDATLRNLIDAGTDAVCIVAKSWDYHVLNALQTTLDEGAAMISDSVEYLAAHGKRVLVDMEHFFDGYKRNPEFALRALEAAIIKGASHVVLCDTNGGSLPHEVQSIVTAVHRHVGSDVIIGIHCHDDTGCAVANSMAAVLAGARHIQGTLNGLGERTGNCNLTTVI 265
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A539DNC4_9ACTN ((R)-citramalate synthase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DNC4_9ACTN)

HSP 1 Score: 305 bits (781), Expect = 9.860e-100
Identity = 148/170 (87.06%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDD TLRNLLDANTS VCIVAKSWDYHVL ALQTTLDEGEAMIADSVAFL   GRQV+VDMEHFFDG+K NPEF+ RALEAA+V GA+HVVLCDTNGGSLP EVE IVADV+ H+GNDV IGIHCHDD GCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTT+I
Sbjct:   56 GKVDDDVTLRNLLDANTSTVCIVAKSWDYHVLEALQTTLDEGEAMIADSVAFLTDAGRQVMVDMEHFFDGYKRNPEFSFRALEAAIVNGASHVVLCDTNGGSLPHEVEQIVADVYHHLGNDVTIGIHCHDDAGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTII 225
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A524B772_9ACTN ((R)-citramalate synthase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B772_9ACTN)

HSP 1 Score: 305 bits (782), Expect = 1.330e-99
Identity = 149/170 (87.65%), Postives = 160/170 (94.12%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDDATLRNL+DANTSAVCIVAKSWDYHVL ALQTTLDEGEAMIADSV +L ANGR+VLVDMEHFFDG+K NPEFALRALEAA+VKGA+HVVLCDTNGGSLP EV+SIV DV RH+G+D IIGIHCHDDTGCAVANS+AAV +GARHVQGTLNGLGERTGN NLTTVI
Sbjct:   83 GKVDDDATLRNLIDANTSAVCIVAKSWDYHVLEALQTTLDEGEAMIADSVEYLVANGRRVLVDMEHFFDGYKRNPEFALRALEAAIVKGASHVVLCDTNGGSLPHEVQSIVGDVKRHIGDDAIIGIHCHDDTGCAVANSVAAVLSGARHVQGTLNGLGERTGNTNLTTVI 252
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A6N2DUL4_9ACTN ((R)-citramalate synthase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DUL4_9ACTN)

HSP 1 Score: 301 bits (771), Expect = 8.870e-98
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDDATLRNLL+A TSAVCIVAKSWDYHVL AL+TTLDEGEAMIADSV +LAANGR+VLVDMEHFFDG+ HNPEFALRALEAAVVKGA+H+VLCDTNGGSLP ++E IV  V RHVG DV +GIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGN NLTT+I
Sbjct:  103 GKVDDDATLRNLLEAETSAVCIVAKSWDYHVLEALKTTLDEGEAMIADSVEYLAANGRRVLVDMEHFFDGYTHNPEFALRALEAAVVKGASHLVLCDTNGGSLPNDIEEIVGQVVRHVGTDVTVGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNANLTTII 272
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A7K1C6W4_9ACTN ((R)-citramalate synthase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1C6W4_9ACTN)

HSP 1 Score: 295 bits (754), Expect = 1.110e-97
Identity = 145/171 (84.80%), Postives = 158/171 (92.40%), Query Frame = 1 
Query:    1 EGKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            +GKVDDDATLR+L+DA TSAVCIVAKSWDYHVLNALQTTLDEG AMIADSV +L  +GR+VLVDMEHFFDGFK N EFALRALEAAVVKGA+H+VLCDTNGGSLP EV+ IVA V RHVG+DV++GIHCHDDTGCAVANSMAAV +GARHVQGTLNGLGERTGN NLTTVI
Sbjct:   79 KGKVDDDATLRHLIDAGTSAVCIVAKSWDYHVLNALQTTLDEGVAMIADSVEYLHGHGRRVLVDMEHFFDGFKRNEEFALRALEAAVVKGASHLVLCDTNGGSLPHEVQEIVASVKRHVGDDVVVGIHCHDDTGCAVANSMAAVLSGARHVQGTLNGLGERTGNTNLTTVI 249
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BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Match: A0A3C2B5U7_9ACTN ((R)-citramalate synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B5U7_9ACTN)

HSP 1 Score: 298 bits (764), Expect = 5.630e-97
Identity = 148/170 (87.06%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    4 GKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADSVAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTNGGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARHVQGTLNGLGERTGNCNLTTVI 513
            GKVDDD TLRNLLDANTSAVCIVAKSWDYHVL ALQTTLDEG AMIADSV FL ANGR V+VDMEHFFDG+K NPEF+LRA+EAAVV GA+H+VLCDTNGGSLP EV  IVADV R VGND  IGIHCHDDTGCAVANSMAAV AGARHVQGTLNGLGERTGNCNLTTVI
Sbjct:   80 GKVDDDTTLRNLLDANTSAVCIVAKSWDYHVLEALQTTLDEGAAMIADSVEFLKANGRLVMVDMEHFFDGYKRNPEFSLRAIEAAVVNGASHLVLCDTNGGSLPHEVSQIVADVKRVVGNDATIGIHCHDDTGCAVANSMAAVLAGARHVQGTLNGLGERTGNCNLTTVI 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56915.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KJ75_9ACTN1.230e-10491.18(R)-citramalate synthase n=1 Tax=Actinomycetia bac... [more]
A0A6J6E2P6_9ZZZZ3.590e-10390.06(R)-citramalate synthase n=2 Tax=root TaxID=1 RepI... [more]
A0A6J7I192_9ZZZZ9.730e-10391.18(R)-citramalate synthase n=2 Tax=root TaxID=1 RepI... [more]
A0A6I3C8B0_9ACTN5.650e-10188.24(R)-citramalate synthase n=2 Tax=root TaxID=1 RepI... [more]
A0A6I3WMA4_9ACTN3.030e-10086.55(R)-citramalate synthase n=2 Tax=root TaxID=1 RepI... [more]
A0A539DNC4_9ACTN9.860e-10087.06(R)-citramalate synthase (Fragment) n=1 Tax=Acidim... [more]
A0A524B772_9ACTN1.330e-9987.65(R)-citramalate synthase n=1 Tax=Acidimicrobiales ... [more]
A0A6N2DUL4_9ACTN8.870e-9886.47(R)-citramalate synthase n=1 Tax=Ilumatobacter sp.... [more]
A0A7K1C6W4_9ACTN1.110e-9784.80(R)-citramalate synthase (Fragment) n=1 Tax=Actino... [more]
A0A3C2B5U7_9ACTN5.630e-9787.06(R)-citramalate synthase n=1 Tax=Acidimicrobiaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56915contigP-wetherbeei_contig56915:2..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_13020
PFAMsHMGL-like,LeuA_dimer
Model size513
Max annot lvl84992|Acidimicrobiia
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.81e-90
EggNOG OGsCOG0119@1|root,COG0119@2|Bacteria,2GKYT@201174|Actinobacteria,4CMUV@84992|Acidimicrobiia
EC2.3.3.13
DescriptionBelongs to the alpha-IPM synthase homocitrate synthase family
Cds size513
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.9000747-CDS-P-wetherbeei_contig56915:1..5141683186844.9000747-CDS-P-wetherbeei_contig56915:1..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56915 2..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56915.1.1prot_P-wetherbeei_contig56915.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56915 2..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56915.1.1

>prot_P-wetherbeei_contig56915.1.1 ID=prot_P-wetherbeei_contig56915.1.1|Name=mRNA_P-wetherbeei_contig56915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
EGKVDDDATLRNLLDANTSAVCIVAKSWDYHVLNALQTTLDEGEAMIADS
VAFLAANGRQVLVDMEHFFDGFKHNPEFALRALEAAVVKGATHVVLCDTN
GGSLPFEVESIVADVHRHVGNDVIIGIHCHDDTGCAVANSMAAVRAGARH
VQGTLNGLGERTGNCNLTTVI
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mRNA from alignment at P-wetherbeei_contig56915:2..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56915.1.1 ID=mRNA_P-wetherbeei_contig56915.1.1|Name=mRNA_P-wetherbeei_contig56915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56915:2..514- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGCAAGGTCGATGACGACGCCACGTTGCGCAACCTGCTCGACGCGAA
CACGTCGGCCGTGTGCATCGTCGCCAAGAGCTGGGACTACCACGTGCTCA
ACGCGCTGCAGACGACGCTCGACGAGGGCGAGGCGATGATCGCCGACTCG
GTCGCCTTCCTCGCTGCCAACGGCCGACAGGTGTTGGTCGACATGGAGCA
CTTCTTCGACGGCTTCAAGCACAACCCCGAGTTCGCCCTGCGGGCACTGG
AGGCGGCCGTCGTGAAGGGCGCCACGCACGTCGTGCTCTGCGACACCAAC
GGCGGCTCGCTGCCGTTCGAGGTCGAATCGATCGTCGCCGACGTGCACCG
CCACGTGGGCAACGACGTGATCATCGGCATCCACTGCCACGACGACACGG
GCTGTGCCGTGGCCAACTCGATGGCGGCGGTGCGCGCCGGCGCCCGGCAC
GTGCAGGGCACGCTCAATGGGCTGGGCGAGCGCACCGGCAACTGCAACCT
GACGACGGTGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56915:2..514-

>mRNA_P-wetherbeei_contig56915.1.1 ID=mRNA_P-wetherbeei_contig56915.1.1|Name=mRNA_P-wetherbeei_contig56915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56915:2..514- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGCAAGGTCGATGACGACGCCACGTTGCGCAACCTGCTCGACGCGAA
CACGTCGGCCGTGTGCATCGTCGCCAAGAGCTGGGACTACCACGTGCTCA
ACGCGCTGCAGACGACGCTCGACGAGGGCGAGGCGATGATCGCCGACTCG
GTCGCCTTCCTCGCTGCCAACGGCCGACAGGTGTTGGTCGACATGGAGCA
CTTCTTCGACGGCTTCAAGCACAACCCCGAGTTCGCCCTGCGGGCACTGG
AGGCGGCCGTCGTGAAGGGCGCCACGCACGTCGTGCTCTGCGACACCAAC
GGCGGCTCGCTGCCGTTCGAGGTCGAATCGATCGTCGCCGACGTGCACCG
CCACGTGGGCAACGACGTGATCATCGGCATCCACTGCCACGACGACACGG
GCTGTGCCGTGGCCAACTCGATGGCGGCGGTGCGCGCCGGCGCCCGGCAC
GTGCAGGGCACGCTCAATGGGCTGGGCGAGCGCACCGGCAACTGCAACCT
GACGACGGTGATC
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