mRNA_P-wetherbeei_contig56910.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56910.1.1
Unique NamemRNA_P-wetherbeei_contig56910.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: I4EQJ2_9ACTN (Uncharacterized protein n=1 Tax=Modestobacter marinus TaxID=477641 RepID=I4EQJ2_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 4.810e-30
Identity = 61/96 (63.54%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 QILVGEFDPGSGRTLAACLTHASRTRSIQ---PSGERVRNT*GTCPGLWDNSWKRLLIPDDVGAPHGALTKGLPDRESLAAYQLVGGVMAYQGIDG 279
            QI+ GEFDPGSGRTLAACLTHASR R      PSGERV NT  TCP LWDNS K +LIPD          K     +  AAYQLVGGVMAYQG DG
Sbjct:   10 QIIYGEFDPGSGRTLAACLTHASRARPSFGGCPSGERVSNTWATCPQLWDNSKKLVLIPDVTADRMVWWWKDSSAEDGPAAYQLVGGVMAYQGDDG 105          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: UPI0019C2A9C4 (Uncharacterized protein n=1 Tax=Streptomyces albospinus TaxID=285515 RepID=UPI0019C2A9C4)

HSP 1 Score: 72.0 bits (175), Expect = 8.730e-15
Identity = 36/63 (57.14%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   91 SGERVRNT*GTCPGLWDNSWKRLLIPDDVGAPHGALTKGLPDRESLAAYQLVGGVMAYQGIDG 279
            SGERV NT   CP LWD  WKR LIPD        + K    ++  AAYQLVGGVMAYQG DG
Sbjct:    9 SGERVSNTWAICPSLWDKPWKRGLIPDMTHGGISCVWKAPAVKDEPAAYQLVGGVMAYQGDDG 71          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A1B6AVX8_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. NBRC 110611 TaxID=1621259 RepID=A0A1B6AVX8_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 1.760e-14
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   91 SGERVRNT*GTCPGLWDNSWKRLLIPDDVGAPHGALTKGLPDRESLAAYQLVGGVMAYQGIDG 279
            SGERV NT   CP LWD  WKR LIPD       ++ K    ++  AAYQLVGGVMAYQG DG
Sbjct:    9 SGERVSNTWAICPSLWDKPWKRGLIPDMTRGRMISVWKAPAVKDEPAAYQLVGGVMAYQGDDG 71          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: G9PMB9_9ACTO (Uncharacterized protein n=1 Tax=Actinomyces sp. oral taxon 849 str. F0330 TaxID=653386 RepID=G9PMB9_9ACTO)

HSP 1 Score: 74.3 bits (181), Expect = 4.930e-14
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = -2
Query:    6 FVSAPCGAPTSSGISSRFQLLSQRPGQVPHVLRTRSPL------GWMDLVRLACVKHAASVRPEPGSNSPTR 203
            F + PC  P    IS  F  LS+R GQV HVL TRSPL      G    VRLACVKHAASVRPEPGSNSP +
Sbjct:   41 FPNPPCDRPGIPRISPTFMRLSRRRGQVTHVLLTRSPLIHTHQKGKRFTVRLACVKHAASVRPEPGSNSPNK 112          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A0P4RI01_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0P4RI01_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 7.120e-14
Identity = 36/63 (57.14%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   91 SGERVRNT*GTCPGLWDNSWKRLLIPDDVGAPHGALTKGLPDRESLAAYQLVGGVMAYQGIDG 279
            SGERV NT   CP LWD  WKR LIPD          K    ++  AAYQLVGGVMAYQG DG
Sbjct:    9 SGERVSNTWAICPSLWDKPWKRGLIPDTTSDRMVWWWKAPAVKDEPAAYQLVGGVMAYQGDDG 71          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A5N0ITC8_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium sp. TaxID=1785 RepID=A0A5N0ITC8_9MYCO)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-13
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    7 LVGEFDPGSGRTLAACLTHASRT-RSIQ--PSGERVRNT*GTCPGLWDNSWKRLLIPD 171
            L GEFDPGSGRTLAACLTHASRT R ++   SGERV NT   CP L D   K  LIPD
Sbjct:    7 LFGEFDPGSGRTLAACLTHASRTERPLRGCSSGERVSNTWVICPALRDKLGKLGLIPD 64          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A7C2B5M6_THERO (Uncharacterized protein n=1 Tax=Thermomicrobium roseum TaxID=500 RepID=A0A7C2B5M6_THERO)

HSP 1 Score: 68.2 bits (165), Expect = 2.480e-13
Identity = 36/55 (65.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   13 GEFDPGSGRTLAACLTHASRTRSIQPS---GERVRNT*GTCPGLWDNSWKRLLIP 168
            GEFDPGSG TLAACL HASRT +       G RVRNT GTCPG  DN  K  LIP
Sbjct:    5 GEFDPGSGGTLAACLMHASRTGARDERADRGGRVRNTWGTCPGAGDNPGKLGLIP 59          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A212LM72_9HYPH (Uncharacterized protein n=1 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LM72_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 2.770e-12
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = -3
Query:   14 RCLGRPLPHQQADRPRGSPDPVTLSSAHHAVLRRHPVLAVVSNCYPRDRDKFLTCYAPVRH*VGWTSFDLHVLSTPPAFVLSQDQTL 274
            R LG PLPHQ A++ R +P  + LS       R HPVLA +S  Y   +  F     P        +FDLHVLS PPAFVLSQDQTL
Sbjct:   12 RRLGEPLPHQLANQTRANPLAINLSPK-----RAHPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A212LKU8_9HYPH (Uncharacterized protein n=2 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LKU8_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 3.770e-12
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = -3
Query:   14 RCLGRPLPHQQADRPRGSPDPVTLSSAHHAVLRRHPVLAVVSNCYPRDRDKFLTCYAPVRH*VGWTSFDLHVLSTPPAFVLSQDQTL 274
            R LG PLPHQ A++ R +P  + LS       R HPVLA +S  Y   +  F     P        +FDLHVLS PPAFVLSQDQTL
Sbjct:   12 RRLGEPLPHQLANQTRANPLAINLSPK-----RAHPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Match: A0A653VA00_9MICC (Uncharacterized protein n=1 Tax=Arthrobacter sp. 8AJ TaxID=2653130 RepID=A0A653VA00_9MICC)

HSP 1 Score: 65.9 bits (159), Expect = 6.600e-12
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = -2
Query:    6 SGISSRFQLLSQRPGQVPHVLRTRSPLGWMD---LVRLACVKHAASVRPEPGSNSPTR 170
            SGI   F  LSQ  GQV HVL TRSPL       +VRLACVKHAASV PEPGSNSP +
Sbjct:   47 SGIRPSFPGLSQSQGQVTHVLLTRSPLIHPQVGIIVRLACVKHAASVHPEPGSNSPLK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56910.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I4EQJ2_9ACTN4.810e-3063.54Uncharacterized protein n=1 Tax=Modestobacter mari... [more]
UPI0019C2A9C48.730e-1557.14Uncharacterized protein n=1 Tax=Streptomyces albos... [more]
A0A1B6AVX8_9ACTN1.760e-1457.14Uncharacterized protein n=1 Tax=Streptomyces sp. N... [more]
G9PMB9_9ACTO4.930e-1459.72Uncharacterized protein n=1 Tax=Actinomyces sp. or... [more]
A0A0P4RI01_9ACTN7.120e-1457.14Uncharacterized protein n=2 Tax=Streptomyces TaxID... [more]
A0A5N0ITC8_9MYCO1.190e-1367.24Uncharacterized protein n=1 Tax=Mycobacterium sp. ... [more]
A0A7C2B5M6_THERO2.480e-1365.45Uncharacterized protein n=1 Tax=Thermomicrobium ro... [more]
A0A212LM72_9HYPH2.770e-1248.28Uncharacterized protein n=1 Tax=uncultured Pleomor... [more]
A0A212LKU8_9HYPH3.770e-1248.28Uncharacterized protein n=2 Tax=uncultured Pleomor... [more]
A0A653VA00_9MICC6.600e-1265.52Uncharacterized protein n=1 Tax=Arthrobacter sp. 8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56910contigP-wetherbeei_contig56910:181..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1196031.ALEG01000035_gene864
Model size279
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.99e-07
EggNOG OGs29TAG@1|root,30EHH@2|Bacteria,1UCJJ@1239|Firmicutes,4IP1R@91061|Bacilli,1ZP94@1386|Bacillus
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.8537152-CDS-P-wetherbeei_contig56910:180..2661683186844.8537152-CDS-P-wetherbeei_contig56910:180..266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56910 181..266 +
1683186844.867785-CDS-P-wetherbeei_contig56910:284..3151683186844.867785-CDS-P-wetherbeei_contig56910:284..315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56910 285..315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.876173-UTR-P-wetherbeei_contig56910:315..4771683186844.876173-UTR-P-wetherbeei_contig56910:315..477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56910 316..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56910.1.1prot_P-wetherbeei_contig56910.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56910 181..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56910.1.1

>prot_P-wetherbeei_contig56910.1.1 ID=prot_P-wetherbeei_contig56910.1.1|Name=mRNA_P-wetherbeei_contig56910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
QILVGEFDPGSGRTLAACLTHASRTRSIQPSGERVRNT*
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mRNA from alignment at P-wetherbeei_contig56910:181..477+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56910.1.1 ID=mRNA_P-wetherbeei_contig56910.1.1|Name=mRNA_P-wetherbeei_contig56910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig56910:181..477+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATTCTTGTTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGC GTGCTTAACACATGCAAGTCGAACGAGGTCCATCCAGTAGCAATACTGGT GAAGACCTAGTGGCGAACGGGTGCGTAACACGTGAGGAACTTGTCCCGGT CTCTGGGATAACAGTTGGAAACGACTGCTAATACCGGATGACGTCGGAGC ACCGCATGGTGCGCTGACGAAAGGGTTACCGGATCGGGAGAGCCTCGCGG CCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCATCGACGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56910:181..477+

>mRNA_P-wetherbeei_contig56910.1.1 ID=mRNA_P-wetherbeei_contig56910.1.1|Name=mRNA_P-wetherbeei_contig56910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig56910:181..477+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATTCTTGTTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGC
GTGCTTAACACATGCAAGTCGAACGAGGTCCATCCAACCTAGTGGCGAAC
GGGTGCGTAACACGTGA
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