mRNA_P-wetherbeei_contig56899.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56899.1.1
Unique NamemRNA_P-wetherbeei_contig56899.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A6L7XWQ8_9GAMM (ABC transporter permease n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XWQ8_9GAMM)

HSP 1 Score: 275 bits (703), Expect = 2.090e-90
Identity = 135/170 (79.41%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+G RA++TLQ G+VAW+ ++ + VPAGI SAV RGRP+DY+ATV+SIG VA+P FW+GIM ILLFGVTLGWLPTQGYV IF+DP+EGLRHM LPAF+LG+TSCALIMRQ+RSAMLEVLAQDY+RTARAKG++ERVVIWIHALRN+LLPVVTV GLQTGRIFAGAVVIET
Sbjct:   92 ELGSRALVTLQFGIVAWLTALFVGVPAGIASAVYRGRPVDYVATVLSIGGVAIPNFWLGIMAILLFGVTLGWLPTQGYVDIFEDPVEGLRHMALPAFALGVTSCALIMRQSRSAMLEVLAQDYMRTARAKGLSERVVIWIHALRNALLPVVTVFGLQTGRIFAGAVVIET 261
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BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A6N9C0W4_9GAMM (ABC transporter permease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9C0W4_9GAMM)

HSP 1 Score: 270 bits (690), Expect = 2.020e-88
Identity = 136/170 (80.00%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+G RA +TLQ G+VAWI++VLIAVPAGI SAV RGRP+DY+ATV+SIG VA+P FW+GIM ILLFGVTLGWLPTQGYV IF+DPLEG+R+M+LPAF+LGITS A+IMRQ+RSAMLEVLAQDY+RTARAKGM E+ VIW HALRN+LLPVVTV GLQTGRIFAGAVVIET
Sbjct:   92 ELGTRAAVTLQFGVVAWIMAVLIAVPAGIASAVYRGRPIDYVATVLSIGGVAIPNFWLGIMAILLFGVTLGWLPTQGYVDIFEDPLEGIRYMILPAFALGITSSAIIMRQSRSAMLEVLAQDYVRTARAKGMREKAVIWRHALRNALLPVVTVFGLQTGRIFAGAVVIET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A6B0XML6_9BACT (ABC transporter permease n=7 Tax=Holophagales bacterium TaxID=2478486 RepID=A0A6B0XML6_9BACT)

HSP 1 Score: 265 bits (678), Expect = 1.300e-86
Identity = 129/170 (75.88%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+G RA++TLQ GL AWI++VL+ VPAGI SAV RG+P+DY ATV+SIG VA+P FW+GIM ILLFGV LGWLP+QGYVS+FDDPL+ LRHM+LPAF+LG+TSCALIMRQ+RSAMLEVLAQDY+RT+RA+G  ER VIW HALRN+LLPV+T+LGLQTGRIFAGA+VIET
Sbjct:   92 ELGGRALVTLQFGLAAWILAVLVGVPAGIASAVYRGKPIDYAATVVSIGGVAIPNFWLGIMAILLFGVGLGWLPSQGYVSLFDDPLQSLRHMVLPAFALGVTSCALIMRQSRSAMLEVLAQDYLRTSRARGSRERTVIWSHALRNALLPVITILGLQTGRIFAGAIVIET 261
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BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A2E6A657_9GAMM (ABC transmembrane type-1 domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6A657_9GAMM)

HSP 1 Score: 263 bits (672), Expect = 1.050e-85
Identity = 133/170 (78.24%), Postives = 153/170 (90.00%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+  RA +TLQ G+VAWI +VLIAVPAGI+SAV RG+ +DYLATV+SI  VA+P FW+G+M ILLFGV LGWLPTQGYV+IFDDP+EGLRHM+LPAF+LGITSCALIMRQ+RSAMLEVLAQDY+RTARAKG+    VIW+HALRN+LLPVVTV GLQTGRIFAGAVVIET
Sbjct:   92 ELKTRAAVTLQFGVVAWIFAVLIAVPAGIVSAVYRGKAVDYLATVVSITGVAIPNFWLGVMSILLFGVILGWLPTQGYVNIFDDPVEGLRHMVLPAFALGITSCALIMRQSRSAMLEVLAQDYVRTARAKGLLGYKVIWVHALRNALLPVVTVFGLQTGRIFAGAVVIET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A2E6YV13_9GAMM (ABC transmembrane type-1 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6YV13_9GAMM)

HSP 1 Score: 258 bits (659), Expect = 9.850e-84
Identity = 131/170 (77.06%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+  RA +TLQ GLVAWI++++I VP GI+SAV RG+P+DY+ATV+SIG VA+P FW+GIM ILLFGV LGWLPTQGYV I+  PLEGL+HM+LPAF+LGITS ALIMRQ+RSAMLEVLAQDY+RTARAKG+ ER VIWIHALRN+LLPVVTV GLQTGRIFAGAVVIET
Sbjct:   92 ELRVRAAVTLQFGLVAWILAIVIGVPLGIVSAVYRGKPVDYVATVVSIGGVAIPNFWLGIMCILLFGVKLGWLPTQGYVDIWQYPLEGLKHMVLPAFALGITSWALIMRQSRSAMLEVLAQDYMRTARAKGLYERTVIWIHALRNALLPVVTVFGLQTGRIFAGAVVIET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A2E7XH99_9GAMM (Peptide ABC transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XH99_9GAMM)

HSP 1 Score: 256 bits (655), Expect = 3.860e-83
Identity = 127/170 (74.71%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+ +R  +TLQ G+VAW+++VLI VPAGI+SAV RG+P+D++ATV+SI  VA+P FW+GIM ILLFGV LGWLPTQGYV IF+DP EG RHM+LPAF+LGITS ALIMRQ+RSAMLEVL QDY+RTARAKGM  R V+W+HALRN+LLPVVTV GLQTGRIFAGAVVIET
Sbjct:   92 ELKDRVQVTLQFGIVAWLLAVLIGVPAGIVSAVYRGKPVDFIATVLSIAGVAIPNFWLGIMSILLFGVILGWLPTQGYVDIFEDPAEGFRHMILPAFALGITSWALIMRQSRSAMLEVLTQDYVRTARAKGMRPRSVVWVHALRNALLPVVTVFGLQTGRIFAGAVVIET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A2D8Y2U0_9GAMM (ABC transmembrane type-1 domain-containing protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2D8Y2U0_9GAMM)

HSP 1 Score: 246 bits (628), Expect = 4.910e-79
Identity = 121/170 (71.18%), Postives = 144/170 (84.71%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+  RA++TLQ GLVAW+ ++ I VP GI SAV RG+P+D+ AT+ISIG VA+P FW+GIM IL FGV LGWLPTQGYV IF++P EGLRHM+LPAF+LGITS ALIMRQ RSAMLEVLAQDY+RTA AKG+    V+W+HALRN+LLPVVTV GLQTGRI AG++VIET
Sbjct:   92 ELKSRALVTLQFGLVAWLAAIFIGVPLGIASAVYRGKPIDFFATIISIGGVAIPNFWLGIMCILYFGVVLGWLPTQGYVDIFENPXEGLRHMILPAFALGITSWALIMRQCRSAMLEVLAQDYVRTAHAKGLLRTKVVWVHALRNALLPVVTVFGLQTGRIXAGSIVIET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: UPI000487E6B2 (ABC transporter permease n=1 Tax=Bradyrhizobium sp. WSM1417 TaxID=754500 RepID=UPI000487E6B2)

HSP 1 Score: 226 bits (577), Expect = 2.570e-71
Identity = 117/171 (68.42%), Postives = 146/171 (85.38%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEG-LRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+ ERA +TL LGL+  +++V++++PAGI SA+ RGR  DYLAT++S+GAVA+PGFW+GI+MILLFGV L WLP QGYV  F D L G L H++LPA +L +TSCAL+MRQTRSAMLEVLAQDY+RTARAKGM   +VIW+H+LRN+LLPVVT+LGLQ G+IFAGAVVIET
Sbjct:   92 ELAERAQVTLGLGLMGVLLAVVLSLPAGIASAIYRGRFADYLATILSVGAVAIPGFWLGIVMILLFGVELRWLPVQGYVP-FSDSLRGWLAHIVLPAIALAVTSCALLMRQTRSAMLEVLAQDYVRTARAKGMPNSIVIWVHSLRNALLPVVTLLGLQVGQIFAGAVVIET 261
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BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: UPI0019CCEDBD (ABC transporter permease n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=UPI0019CCEDBD)

HSP 1 Score: 207 bits (526), Expect = 1.310e-63
Identity = 104/170 (61.18%), Postives = 136/170 (80.00%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            E+  RA++TL+LG++ W++S LIA+PAG+++   RG  +D   TV ++ A+A+PGFWVGIM+ILLFGV L WLPTQG+V+   DP E LRHM+LPA +LG  S AL+MRQTRSA++EVLA DYIRTARAKG+A R V+  HA  N+LLPVVTV+GL+ GR+ AGAVV+ET
Sbjct:   92 ELSLRALVTLELGVLGWMLSTLIAIPAGVLAGAFRGGRIDAATTVFAVSAIALPGFWVGIMLILLFGVHLHWLPTQGFVAFNVDPWENLRHMVLPAIALGTGSAALLMRQTRSALIEVLALDYIRTARAKGLARRAVVLEHAWPNALLPVVTVMGLEIGRMLAGAVVVET 261
[Close]
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Match: A0A7Y5W2V1_9CHLR (ABC transporter permease (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7Y5W2V1_9CHLR)

HSP 1 Score: 195 bits (495), Expect = 5.230e-59
Identity = 93/170 (54.71%), Postives = 131/170 (77.06%), Query Frame = 1 
Query:    1 EVGERAIITLQLGLVAWIVSVLIAVPAGIISAV*RGRPLDYLATVISIGAVAVPGFWVGIMMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQTRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGRIFAGAVVIET 510
            EV  R  +TLQL + + +++ LI +PAG+ +A+ R RP+D L TV+S+  VAVP FW+GIMMILLF V L WLP  G+VS+F+DP+ G++ +++PA  LG    A++ RQTRSAMLEVL QDYIRTARAKG++ R VIW+HAL+N++LP++T+LGL  G + +GA ++ET
Sbjct:   95 EVTPRLKVTLQLSIASLLIATLIGLPAGVAAAIWRDRPIDRLITVVSVAGVAVPSFWLGIMMILLFSVRLEWLPPSGFVSVFEDPVRGMKLLVMPATILGAGGAAILTRQTRSAMLEVLNQDYIRTARAKGLSSRNVIWLHALKNAMLPIITILGLFVGNLLSGAAIVET 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56899.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7XWQ8_9GAMM2.090e-9079.41ABC transporter permease n=2 Tax=Gammaproteobacter... [more]
A0A6N9C0W4_9GAMM2.020e-8880.00ABC transporter permease n=1 Tax=Gammaproteobacter... [more]
A0A6B0XML6_9BACT1.300e-8675.88ABC transporter permease n=7 Tax=Holophagales bact... [more]
A0A2E6A657_9GAMM1.050e-8578.24ABC transmembrane type-1 domain-containing protein... [more]
A0A2E6YV13_9GAMM9.850e-8477.06ABC transmembrane type-1 domain-containing protein... [more]
A0A2E7XH99_9GAMM3.860e-8374.71Peptide ABC transporter n=1 Tax=Gammaproteobacteri... [more]
A0A2D8Y2U0_9GAMM4.910e-7971.18ABC transmembrane type-1 domain-containing protein... [more]
UPI000487E6B22.570e-7168.42ABC transporter permease n=1 Tax=Bradyrhizobium sp... [more]
UPI0019CCEDBD1.310e-6361.18ABC transporter permease n=1 Tax=Acetobacteraceae ... [more]
A0A7Y5W2V1_9CHLR5.230e-5954.71ABC transporter permease (Fragment) n=1 Tax=Dehalo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56899contigP-wetherbeei_contig56899:3..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog504728.K649_00420
PFAMsBPD_transp_1
Model size510
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K02033
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.11e-38
EggNOG OGsCOG0601@1|root,COG0601@2|Bacteria,1WMC0@1297|Deinococcus-Thermus
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size330
COG categoryEP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.605894-CDS-P-wetherbeei_contig56899:2..3321683186844.605894-CDS-P-wetherbeei_contig56899:2..332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56899 3..332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.617886-UTR-P-wetherbeei_contig56899:332..5121683186844.617886-UTR-P-wetherbeei_contig56899:332..512Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56899 333..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56899.1.1prot_P-wetherbeei_contig56899.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56899 3..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56899.1.1

>prot_P-wetherbeei_contig56899.1.1 ID=prot_P-wetherbeei_contig56899.1.1|Name=mRNA_P-wetherbeei_contig56899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MMILLFGVTLGWLPTQGYVSIFDDPLEGLRHMLLPAFSLGITSCALIMRQ
TRSAMLEVLAQDYIRTARAKGMAERVVIWIHALRNSLLPVVTVLGLQTGR
IFAGAVVIET
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mRNA from alignment at P-wetherbeei_contig56899:3..512-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56899.1.1 ID=mRNA_P-wetherbeei_contig56899.1.1|Name=mRNA_P-wetherbeei_contig56899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig56899:3..512- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCGGCGAACGCGCCATCATCACCCTGCAGCTCGGCCTCGTGGCGTG
GATCGTCTCGGTGCTGATCGCGGTGCCGGCGGGCATCATCTCGGCGGTCT
AACGCGGCCGGCCGCTCGACTACCTGGCGACGGTGATCTCGATCGGCGCG
GTGGCGGTACCGGGCTTCTGGGTCGGCATCATGATGATCCTGCTGTTCGG
CGTCACGCTGGGCTGGCTGCCGACCCAGGGCTACGTCAGCATCTTCGACG
ACCCGCTCGAGGGCCTGCGCCACATGCTGCTGCCGGCCTTCTCGCTAGGC
ATCACCAGCTGCGCGCTGATCATGCGCCAGACGCGCTCGGCCATGCTCGA
GGTGCTGGCGCAGGACTACATCCGCACGGCGCGCGCCAAGGGCATGGCCG
AGCGCGTCGTGATCTGGATCCATGCGCTGCGCAACTCGCTGCTGCCAGTG
GTCACCGTGCTCGGGCTGCAGACCGGACGCATCTTCGCCGGCGCCGTCGT
CATCGAGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56899:3..512-

>mRNA_P-wetherbeei_contig56899.1.1 ID=mRNA_P-wetherbeei_contig56899.1.1|Name=mRNA_P-wetherbeei_contig56899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig56899:3..512- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGATCCTGCTGTTCGGCGTCACGCTGGGCTGGCTGCCGACCCAGGG
CTACGTCAGCATCTTCGACGACCCGCTCGAGGGCCTGCGCCACATGCTGC
TGCCGGCCTTCTCGCTAGGCATCACCAGCTGCGCGCTGATCATGCGCCAG
ACGCGCTCGGCCATGCTCGAGGTGCTGGCGCAGGACTACATCCGCACGGC
GCGCGCCAAGGGCATGGCCGAGCGCGTCGTGATCTGGATCCATGCGCTGC
GCAACTCGCTGCTGCCAGTGGTCACCGTGCTCGGGCTGCAGACCGGACGC
ATCTTCGCCGGCGCCGTCGTCATCGAGACG
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