mRNA_P-wetherbeei_contig5689.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5689.2.1
Unique NamemRNA_P-wetherbeei_contig5689.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A521MGB1_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MGB1_9HYPH)

HSP 1 Score: 219 bits (557), Expect = 2.760e-71
Identity = 116/133 (87.22%), Postives = 124/133 (93.23%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VVVDPGV IKWFVEEPLR QARSLLVNRHE+IAPDILIAGVA+LA +KAASGEI+A+QA  IVRNIALP+FISAFVESPRLRNRAFALALQCG  VHDCFYAACAEAASAPL+S DEAFLQALQ EG+ALRGV
Sbjct:    3 VVVDPGVTIKWFVEEPLRPQARSLLVNRHELIAPDILIAGVADLAWRKAASGEIAADQATSIVRNIALPAFISAFVESPRLRNRAFALALQCGWPVHDCFYAACAEAASAPLISADEAFLQALQTEGIALRGV 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A521L5L8_9HYPH (PIN domain-containing protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L5L8_9HYPH)

HSP 1 Score: 211 bits (538), Expect = 2.170e-68
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VVV+PGVAIKWFVEEPLR QARSLLV++HE+IAPDILIAGVAELA KKA  GEI+AEQA PIVRNIALPSF+SAFV+S RLRNRA A+ALQCGR VHDCFYAACAEAASAPLVSTDE FLQAL+ EG+ LRG+
Sbjct:    3 VVVEPGVAIKWFVEEPLRPQARSLLVDKHELIAPDILIAGVAELAWKKATRGEITAEQAEPIVRNIALPSFVSAFVDSARLRNRALAIALQCGRPVHDCFYAACAEAASAPLVSTDETFLQALKVEGIDLRGI 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A1F3AB59_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3AB59_9PROT)

HSP 1 Score: 211 bits (537), Expect = 3.080e-68
Identity = 114/133 (85.71%), Postives = 119/133 (89.47%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VVVDPGV +KWFVEEPLR QARSLLVNRHE+IAPDILIAGVAELA KKAASGEISA+QA  IVRNIALP FISAFVESPRLRNRAFALALQC R VHDCFYAACAEAAS  LVSTDE  LQAL+ EG+ LRGV
Sbjct:    3 VVVDPGVVLKWFVEEPLRPQARSLLVNRHELIAPDILIAGVAELAWKKAASGEISADQATAIVRNIALPFFISAFVESPRLRNRAFALALQCDRPVHDCFYAACAEAASTALVSTDEPLLQALRTEGIVLRGV 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A521QHT7_9HYPH (Ribonuclease VapC n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521QHT7_9HYPH)

HSP 1 Score: 208 bits (530), Expect = 3.590e-67
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            +VVDP VAIKWFVEEPLR QARSLL +RHE+IAPDILIAGVAELA KK   GEISAEQA PIVRNIALP+FISAFVESPRLR+RAF +ALQCGR VHDCFYAACAEAA+APLVSTDE FLQAL+ EG+ LR V
Sbjct:    3 IVVDPSVAIKWFVEEPLRPQARSLLADRHELIAPDILIAGVAELAWKKVTRGEISAEQAEPIVRNIALPAFISAFVESPRLRSRAFTIALQCGRPVHDCFYAACAEAAAAPLVSTDETFLQALRLEGIDLRSV 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A259MLP4_9PROT (PINc domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MLP4_9PROT)

HSP 1 Score: 205 bits (522), Expect = 5.940e-66
Identity = 109/133 (81.95%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VVVDPGVAIKWFVEEPLR QARSLL NRHEVIAPDILIAGVAELA +KA  GEI+ EQA PIVRNIALPSFISAFVESP+LRNRA A+ALQCGR VH CFYAACAE A APLVS DE FLQAL+++G+ +RGV
Sbjct:    3 VVVDPGVAIKWFVEEPLRPQARSLLANRHEVIAPDILIAGVAELAWQKATRGEITIEQAEPIVRNIALPSFISAFVESPQLRNRALAIALQCGRPVHACFYAACAEGAKAPLVSADEEFLQALKSKGIPVRGV 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A512N2D7_9HYPH (PINc domain-containing protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512N2D7_9HYPH)

HSP 1 Score: 205 bits (521), Expect = 9.930e-66
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VV+DPGVAIKWFVEEPLR QARSLLV+ HEV+APDILIAGVAELA KK  +GEI+ +QA PIVRNI LP+F+SAFVES RLRNRA ALALQCGR VHDCFYAACAEA  APLVS+DE FLQAL+ EG+ALRGV
Sbjct:    9 VVIDPGVAIKWFVEEPLRQQARSLLVHGHEVVAPDILIAGVAELAWKKTVAGEIAPDQAEPIVRNIGLPAFVSAFVESTRLRNRALALALQCGRPVHDCFYAACAEAVGAPLVSSDETFLQALKLEGIALRGV 141          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: UPI001E52DC9D (type II toxin-antitoxin system VapC family toxin n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E52DC9D)

HSP 1 Score: 203 bits (517), Expect = 3.430e-65
Identity = 108/133 (81.20%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            VVVDPGVAIKWFVEEPLR QARSLL NRHEVIAPDILIAGVAELA KK  SGEI+ EQA PIVRNIALPSF+SAFVESP+LRNRA A+ALQC R VH+CFYAACAE+A APLVS DE FLQAL+ EG+ +R V
Sbjct:    3 VVVDPGVAIKWFVEEPLRPQARSLLANRHEVIAPDILIAGVAELAWKKTTSGEITVEQAEPIVRNIALPSFVSAFVESPQLRNRALAIALQCSRPVHECFYAACAESAMAPLVSADEEFLQALKNEGIPVRVV 135          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: UPI001C217BC0 (type II toxin-antitoxin system VapC family toxin n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C217BC0)

HSP 1 Score: 201 bits (511), Expect = 2.810e-64
Identity = 104/131 (79.39%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALR 393
            VV+DPGVAIKWFVEEPLR QARSLL NRHEVIAPDILIAGVAELA +KA  GEI+ +QA PIVRNIALPSFISAFVESP+LR RA A+ALQCGR VH+CFYAACAE+A APLVS+DE FL AL++EG+ +R
Sbjct:    3 VVIDPGVAIKWFVEEPLRPQARSLLANRHEVIAPDILIAGVAELAWQKATRGEITTDQAEPIVRNIALPSFISAFVESPKLRTRALAIALQCGRPVHECFYAACAESAKAPLVSSDEEFLHALESEGIGVR 133          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A1E4HM11_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HM11_9PROT)

HSP 1 Score: 154 bits (389), Expect = 4.920e-46
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 1
Query:   70 LLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVALRGV 399
            LL ++HE+IAPDILIAGVAELA +K   GEISAEQA PIVRNIALP+FISAFV+S RLR+RAFA+ALQCGR V++CFYAACAEAA+APLVSTDE FLQAL++  + +RG+
Sbjct:    2 LLADKHELIAPDILIAGVAELAWRKVTRGEISAEQAEPIVRNIALPAFISAFVDSARLRSRAFAIALQCGRPVYECFYAACAEAAAAPLVSTDETFLQALKSAEIDVRGL 111          
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Match: A0A523FG05_9PROT (Ribonuclease VapC n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FG05_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 9.420e-18
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    4 VVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAASGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCFYAACAEAASAPLVSTDEAFLQALQAEGVA 387
            V+D  VAIKWF+EE L A+A ++L +   + APD+L+A +  +  KK   GEI+  QA  IV   ALP  +S    S  L  RA ALA      V+DC Y ACAEA    L++ D+   +A    G A
Sbjct:    4 VIDASVAIKWFIEENLSAEAGAILGHGEPLFAPDLLLAEIGNVLWKKVIRGEITRGQAEVIVT--ALPDCLSRLWPSRELAGRALALAFALDHPVYDCLYLACAEATGGTLITADKRLHEAAGKAGFA 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5689.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521MGB1_9HYPH2.760e-7187.22Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A521L5L8_9HYPH2.170e-6883.46PIN domain-containing protein n=1 Tax=Reyranella s... [more]
A0A1F3AB59_9PROT3.080e-6885.71Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A521QHT7_9HYPH3.590e-6782.71Ribonuclease VapC n=2 Tax=Alphaproteobacteria TaxI... [more]
A0A259MLP4_9PROT5.940e-6681.95PINc domain-containing protein n=3 Tax=Alphaproteo... [more]
A0A512N2D7_9HYPH9.930e-6680.45PINc domain-containing protein n=4 Tax=Alphaproteo... [more]
UPI001E52DC9D3.430e-6581.20type II toxin-antitoxin system VapC family toxin n... [more]
UPI001C217BC02.810e-6479.39type II toxin-antitoxin system VapC family toxin n... [more]
A0A1E4HM11_9PROT4.920e-4674.55Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A523FG05_9PROT9.420e-1841.41Ribonuclease VapC n=1 Tax=Alphaproteobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5689contigP-wetherbeei_contig5689:466..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000002_gene2962
PFAMsPIN
Model size399
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-62
EggNOG OGsCOG4113@1|root,COG4113@2|Bacteria,1N7ET@1224|Proteobacteria,2UG7M@28211|Alphaproteobacteria,2JY5V@204441|Rhodospirillales
DescriptionToxic component of a toxin-antitoxin (TA) module. An RNase
Cds size399
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.5323732-CDS-P-wetherbeei_contig5689:465..8641683186844.5323732-CDS-P-wetherbeei_contig5689:465..864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5689 466..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5689.2.1prot_P-wetherbeei_contig5689.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5689 466..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5689.2.1

>prot_P-wetherbeei_contig5689.2.1 ID=prot_P-wetherbeei_contig5689.2.1|Name=mRNA_P-wetherbeei_contig5689.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
VVVDPGVAIKWFVEEPLRAQARSLLVNRHEVIAPDILIAGVAELARKKAA
SGEISAEQAAPIVRNIALPSFISAFVESPRLRNRAFALALQCGRSVHDCF
YAACAEAASAPLVSTDEAFLQALQAEGVALRGV
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mRNA from alignment at P-wetherbeei_contig5689:466..864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5689.2.1 ID=mRNA_P-wetherbeei_contig5689.2.1|Name=mRNA_P-wetherbeei_contig5689.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig5689:466..864+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCGTCGATCCCGGCGTCGCCATAAAATGGTTCGTCGAGGAGCCGCT GCGTGCCCAGGCCCGCTCGCTGCTGGTCAACCGGCACGAAGTGATCGCGC CCGACATCCTGATCGCGGGCGTGGCCGAGCTTGCCAGGAAGAAGGCGGCA AGCGGCGAGATCTCGGCCGAGCAGGCAGCACCCATCGTGCGCAACATCGC CCTGCCGTCCTTCATCTCGGCCTTCGTCGAATCGCCCCGGCTGCGCAACC GCGCCTTCGCCCTGGCGCTGCAATGCGGCCGGTCGGTGCACGACTGCTTC TATGCTGCCTGTGCAGAGGCGGCCTCAGCGCCCCTGGTCAGCACCGACGA GGCCTTCCTGCAGGCGCTGCAGGCCGAAGGCGTTGCGCTCCGCGGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5689:466..864+

>mRNA_P-wetherbeei_contig5689.2.1 ID=mRNA_P-wetherbeei_contig5689.2.1|Name=mRNA_P-wetherbeei_contig5689.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig5689:466..864+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCGTCGATCCCGGCGTCGCCATAAAATGGTTCGTCGAGGAGCCGCT
GCGTGCCCAGGCCCGCTCGCTGCTGGTCAACCGGCACGAAGTGATCGCGC
CCGACATCCTGATCGCGGGCGTGGCCGAGCTTGCCAGGAAGAAGGCGGCA
AGCGGCGAGATCTCGGCCGAGCAGGCAGCACCCATCGTGCGCAACATCGC
CCTGCCGTCCTTCATCTCGGCCTTCGTCGAATCGCCCCGGCTGCGCAACC
GCGCCTTCGCCCTGGCGCTGCAATGCGGCCGGTCGGTGCACGACTGCTTC
TATGCTGCCTGTGCAGAGGCGGCCTCAGCGCCCCTGGTCAGCACCGACGA
GGCCTTCCTGCAGGCGCTGCAGGCCGAAGGCGTTGCGCTCCGCGGCGTG
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