mRNA_P-wetherbeei_contig5688.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5688.1.1
Unique NamemRNA_P-wetherbeei_contig5688.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5688.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5688contigP-wetherbeei_contig5688:291..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size305
Hectar predicted targeting categorysignal peptide
Exons3
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.3808148-CDS-P-wetherbeei_contig5688:290..3111683186844.3808148-CDS-P-wetherbeei_contig5688:290..311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5688 291..311 -
1683186844.391229-CDS-P-wetherbeei_contig5688:454..4881683186844.391229-CDS-P-wetherbeei_contig5688:454..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5688 455..488 -
1683186844.4007242-CDS-P-wetherbeei_contig5688:821..10451683186844.4007242-CDS-P-wetherbeei_contig5688:821..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5688 822..1045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.4110086-UTR-P-wetherbeei_contig5688:1045..10701683186844.4110086-UTR-P-wetherbeei_contig5688:1045..1070Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5688 1046..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5688.1.1prot_P-wetherbeei_contig5688.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5688 291..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5688.1.1

>prot_P-wetherbeei_contig5688.1.1 ID=prot_P-wetherbeei_contig5688.1.1|Name=mRNA_P-wetherbeei_contig5688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MRKLGAVIALLAAWPTKGGPLFQQPGIPPVRTWEVAEVPPELAPTCSYGP
QDDMQPDRTMSSPWPLAPVQFPRTKHEPGPLYAGLLMWDSRGG
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mRNA from alignment at P-wetherbeei_contig5688:291..1070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5688.1.1 ID=mRNA_P-wetherbeei_contig5688.1.1|Name=mRNA_P-wetherbeei_contig5688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig5688:291..1070- (Phaeothamnion wetherbeei SAG_119_79)
AAACAACATAGAGTTGAGAGTAACGATGAGGAAGCTGGGAGCGGTGATTG
CGCTCCTTGCTGCATGGCCTACAAAGGGAGGCCCATTGTTTCAACAGCCG
GGTATCCCGCCGGTCCGGACCTGGGAGGTGGCAGAAGTCCCTCCTGAGCT
AGCGCCGACGTGCAGCTATGGACCTCAGGACGACATGCAACCCGACCGCA
CAATGTCGAGTCCGTGGCCCCTGGCCCCAGTTCAATTCCCCCGAACAAAG
TGAGCAGCATTTTTTCGCGTTCACAATACGTCTCCGCCCATCATTTCTTT
CCGCAGGACAAAGACGCCAACGCGTGCCGGCTTGTATATCCATCCTTTAG
TCTGCAATGAACGACTGCGTACACGTTTTTGTTTCGACGCCAGTTCCTTT
ATTGAAGAAAGTGGAAATACATTTTTTCTCCTGGGAAATCTCGCCCCTTT
CCTTTTCTCCTTTTTCTTTGCTCCCCTTCTCATTTGGCTCGAGACGGGCT
TGGGGTGGGATGAATGGCTCAAACTCCTTCACTCCTTCTCCCCTCCGTCG
TCAATCCCTCCTTTTTCTTCGTTCTCTCTTAGGCACGAGCCGGGACCGCT
GTACGCCGGTTTGCTGGTAAAACTTTAATTTTTACAACTCCGAAGAATAA
GATATGCCTCTCATTTCTGTGCTGTTACCCTGCTGTAATGTCACTTGGAT
TTCTCCGAAGAAGGAGTCTATTTCCAATAAATCTTTGCATCCTGCTCCCT
CACGCACAGATGTGGGATTCTCGGGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5688:291..1070-

>mRNA_P-wetherbeei_contig5688.1.1 ID=mRNA_P-wetherbeei_contig5688.1.1|Name=mRNA_P-wetherbeei_contig5688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig5688:291..1070- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGAAGCTGGGAGCGGTGATTGCGCTCCTTGCTGCATGGCCTACAAA
GGGAGGCCCATTGTTTCAACAGCCGGGTATCCCGCCGGTCCGGACCTGGG
AGGTGGCAGAAGTCCCTCCTGAGCTAGCGCCGACGTGCAGCTATGGACCT
CAGGACGACATGCAACCCGACCGCACAATGTCGAGTCCGTGGCCCCTGGC
CCCAGTTCAATTCCCCCGAACAAAGCACGAGCCGGGACCGCTGTACGCCG
GTTTGCTGATGTGGGATTCTCGGGGCGGC
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