mRNA_P-wetherbeei_contig5686.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5686.1.1
Unique NamemRNA_P-wetherbeei_contig5686.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A6H5JAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM1_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.770e-45
Identity = 93/208 (44.71%), Postives = 134/208 (64.42%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPA----GKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAF--ALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            MK HVRILVCGD+ VGKS+ I  L++++F+  VP VM+DV+IPP+E+DD V  TI DSSA P+ R +L++K+  A++I++L+DV+RP+T +HL +FWLPLI AN E  P      K D  V    +G L    S  ++  ME        F  +LECSA   +G+ + F    + A+YP  PLY+  + +L P F RA+RR+FR+ D+
Sbjct:    1 MKDHVRILVCGDDGVGKSTFIGTLIARNFAHEVPAVMSDVHIPPEENDDQVFCTITDSSALPRGRQQLVEKMQSAESILVLYDVQRPETLTHLDTFWLPLIEANAEDVPVVIVRNKMDTLVA---EGDLGEQRSIDLERQMEPLEKRYRCFHVSLECSAVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIYDV 205          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: D8LB08_ECTSI (Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB08_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.450e-45
Identity = 91/208 (43.75%), Postives = 135/208 (64.90%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPA----GKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAF--ALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            MK HVRILVCGD+ VGKS+ I  L++++F+  VP VM+DV+IPP+E+DD V  TI DSSA P+ R +L++K+  A+++++L+DV+RP+T +HL +FWLPLI AN E  P      K D  V    +G L    S  ++  ME        F  +LECS+   +G+ + F    + A+YP  PLY+  + +L P F RA+RR+FR++D+
Sbjct:    1 MKDHVRILVCGDDGVGKSTFIGTLIARNFAHEVPAVMSDVHIPPEENDDQVFCTITDSSALPRDRQQLVEKMQSAESVLVLYDVQRPETLTHLDTFWLPLIEANAEDVPVVIVRNKMDTLVA---EGDLGEQRSVDLERQMEPLEKRYRCFHVSLECSSVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIHDV 205          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A482V3I7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3I7_9ARCH)

HSP 1 Score: 128 bits (322), Expect = 2.550e-33
Identity = 81/206 (39.32%), Postives = 120/206 (58.25%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPAGKEDGAVTGRLQGGLDATNSAQ----MDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            MK HVR+L+ GD+ VGKSSLIS  +S+HF   VPP++ D  IP + + D V  TI DSS+ P  R  L ++I  AD+I+ L+DV RP+T  ++   WLPLI     ++ +GKE   V   L   +D  NS +    +  ++E+F  V    A +CS+ +L  V  VF    S+   P+ P++D++ + L PA   A  RIFR+ D+
Sbjct:    1 MKDHVRLLLIGDDGVGKSSLISTYISRHFPNNVPPIIADATIPAESTADEVPVTIMDSSSRPSERDTLRKRIGLADSIIALYDVTRPETLDNVSQTWLPLI-----MEISGKEKKPVL-VLGTKIDLVNSDEDIEKLQSIIEQFPFV--VLASKCSSVKL-DVDRVFHLGVSLVTNPLFPIFDMNTKDLTPAARSAFLRIFRIFDV 197          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A7S2S1L2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1L2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.850e-33
Identity = 82/207 (39.61%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRR-VPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTE---VQPAGKEDGAVTGRLQGGLDATNSAQMDWLMERF-GMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            M++ V+ILV GD+ VGKSSLI  L+S HFS R +P V  DV+IPP+ ++DGV   I DSS       EL  K+ EAD+IVL++D++R DT  HL +FWLP +   T    +    K D             +   ++  ++E+F  MV A F  ECSAK   G+AEVF  A  +  +P  P++D+ +  L    +  ++RIFR  D+
Sbjct:    1 MRTQVKILVLGDDGVGKSSLICTLISNHFSEREMPAVYKDVSIPPEATEDGVQVIIMDSSQ-TMATEELTAKVAEADSIVLVYDIQRRDTLDHLMTFWLPFLTDRTRAPVIIAGNKSDAREVVMADAEAPRSQVEEITPILEKFRSMVWACF--ECSAKNHSGIAEVFWMAQIVVTHPSAPIFDLERNCLTAKCTFVMKRIFRFYDV 204          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A7S3GWJ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWJ3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.930e-32
Identity = 84/203 (41.38%), Postives = 116/203 (57.14%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIA-ANTEVQPAGKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            MK H++IL+ GDE VGKSSLISA +SQHF + VPPVMTD  +PP+ + + V  TI DSS+    R  L QKI  AD+I+ L+DV RP+T   + +FWLPLI   +TE        G  T  L   +D   + Q++ L   F  V   +  +CSA  +  +   F  A     YP+  +YD+ + +  PA  RA  RIFR+ D+
Sbjct:    1 MKDHIKILLVGDEGVGKSSLISAYISQHFPQEVPPVMTDTVLPPEATTNEVCVTIMDSSSHINDRDVLRQKIINADSIIALYDVTRPETLDSISNFWLPLITDLSTEPYKPVILVGNKTDLLAEEID---TEQLNNLFAAFPSVMNCW--DCSAANIQNLDTAFHMAMLFVNYPLSYIYDMTEDEFLPAARRAFLRIFRIFDV 198          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A0L0HSI3_SPIPD (Mitochondrial Rho GTPase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HSI3_SPIPD)

HSP 1 Score: 132 bits (332), Expect = 2.400e-32
Identity = 80/205 (39.02%), Postives = 121/205 (59.02%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPAGKEDGAVTGRLQGGLDATNSA---QMDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            M+  VRIL+ GDE+VGKS+LI++L+ + F   +  V+ +V IPP+ + + V+T I DSS  P++R +L  ++  AD I +++ + +P+T++H+G FWLP I       P       +  R   G D TN A   Q+  +M  F  V     +ECSAK+ L V+EVF  A    ++P  PLYD  +  L+PA   A+RRIF+L DL
Sbjct:    2 MREVVRILLVGDEQVGKSTLITSLIKETFVPNIQHVVPEVTIPPEWTREKVTTRIVDSSPRPENREQLDTEVRRADVICIVYAINKPETFAHVGDFWLPYIRKLGRNVPVVLVGNKIDVR---GKDITNEALEEQIMPIMNEFKEVETC--VECSAKQPLNVSEVFYFAQKAVLHPTAPLYDSREHTLKPACIEALRRIFKLCDL 201          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A425DPK1_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DPK1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.600e-31
Identity = 76/198 (38.38%), Postives = 121/198 (61.11%), Query Frame = 1
Query:   13 VRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPAGKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            +RI+V G+EKVGKSSLISALVSQ  S RVP V+ D+ IP +++ + V+ ++ D+S+      E+++ +  +DA ++++DV R  +   LG +WL L+   T+V P     G     L GG + +   ++  ++  +  +    +LECSA+ L+ V + F  A    +YPM PLYD  K+QL+P F  A++RIFRL D+
Sbjct:   23 IRIMVLGEEKVGKSSLISALVSQQASERVPSVLHDIVIPTEDTRENVAISLHDTSSSSNDVMEVIKTMNRSDAAIVVFDVSRSISSQRLG-YWLDLLKV-TKVMPVVLV-GNKCDLLPGGSEIS---RVQSVLRNYKFI--VHSLECSARTLINVKKTFGLAQKAVLYPMAPLYDAEKKQLQPKFITALKRIFRLFDV 212          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: M2XSJ9_GALSU (Mitochondrial Rho GTPase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSJ9_GALSU)

HSP 1 Score: 128 bits (322), Expect = 6.240e-31
Identity = 76/203 (37.44%), Postives = 118/203 (58.13%), Query Frame = 1
Query:    1 MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPAGKEDGAVTGRLQGGLDATNSAQ--MDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLND 603
            MK  VRI+V GD KVGKSSLI  L+S+ F   V PV+  V IPP+ + + V  +I D+S+ P+ R +L ++I +AD +VL++DV + +T     S+WLP +       P       +  R   G+ A +S +  +  +M+ F  V     +ECSAK++  +AE+F  A    ++P  PLYD+++  L+P    A++RIFRL D
Sbjct:    1 MKPSVRIVVVGDPKVGKSSLIKTLISESFEDEVQPVLPTVVIPPEVTPERVHVSIVDTSSSPEERHKLEEEIRKADVLVLVYDVSKRETLDRASSYWLPTLRRLGVTVPVVLVGNKIDVR---GIGADHSLEHLIKPIMDEFREVDVC--IECSAKQVFNIAELFYYAQKAVIHPTAPLYDVNEHTLKPKAVSALKRIFRLCD 198          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A485LFG9_9STRA (Mitochondrial Rho GTPase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFG9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.300e-31
Identity = 80/201 (39.80%), Postives = 118/201 (58.71%), Query Frame = 1
Query:   13 VRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQP---AGKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLNDL 606
            +R+++ GDEKVGKSSLISALVSQH S RVP V+ D+ IP ++S D V  ++ D+S++     E+++ +  +DA ++++DV R  +   LG +WL L+     V       K D      L GG +   S+++  +M  +  +    +LECSA+ L  V + F  A    +YPM PLYD  K+QL P F   +RRIFRL DL
Sbjct:    7 IRLMLLGDEKVGKSSLISALVSQHASERVPKVLHDIVIPTEDSRDNVVISLHDTSSNAGDVMEVIKTMNRSDAAIVVYDVSRSISSQRLG-YWLDLLKVTKAVPVILVGNKSD-----LLPGGSE---SSRVQSIMRNYKFI--VHSLECSARTLTNVKKTFGLAQKAVLYPMAPLYDAEKKQLHPKFVNVLRRIFRLFDL 196          
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Match: A0A067C377_SAPPC (EF-hand domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C377_SAPPC)

HSP 1 Score: 125 bits (315), Expect = 9.330e-31
Identity = 78/197 (39.59%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   13 VRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDGVSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPLIAANTEVQPAGKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAFALECSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLND 603
            +R++V GDEKVGKSSLISALVSQH S  VP V+ D+ IP +++ + V  ++ D+S++     E+++ I  +DA ++++DV RP +   L S+WL L+   T+V P     G     L GG + +   ++  ++  +  +    +LECSAK L+ V + F  A    +YPM PLYD  K+QL+P F + ++RIFRL D
Sbjct:   22 IRLMVLGDEKVGKSSLISALVSQHSSEHVPRVLHDIVIPTEDTRENVVISLHDTSSNSNDVMEVIKTINRSDAAIVVYDVSRPISSQRL-SYWLDLLKV-TKVMPVVLV-GNKCDLLPGGSEMS---RVQSVLRNYKFI--VHSLECSAKSLVNVKKTFGLAQKAVLYPMGPLYDAEKKQLQPMFVQVLKRIFRLFD 210          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5686.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAM1_9PHAE3.770e-4544.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB08_ECTSI7.450e-4543.75Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculo... [more]
A0A482V3I7_9ARCH2.550e-3339.32Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2S1L2_9STRA7.850e-3339.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3GWJ3_9STRA1.930e-3241.38Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0L0HSI3_SPIPD2.400e-3239.02Mitochondrial Rho GTPase n=2 Tax=Spizellomyces Tax... [more]
A0A425DPK1_9STRA3.600e-3138.38EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
M2XSJ9_GALSU6.240e-3137.44Mitochondrial Rho GTPase n=1 Tax=Galdieria sulphur... [more]
A0A485LFG9_9STRA6.300e-3139.80Mitochondrial Rho GTPase n=1 Tax=Aphanomyces stell... [more]
A0A067C377_SAPPC9.330e-3139.59EF-hand domain-containing protein n=1 Tax=Saproleg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5686contigP-wetherbeei_contig5686:1935..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB08
Preferred nameRHOT2
PFAMsEF_assoc_1,EF_assoc_2,Ras
Model size606
Max annot lvl2759|Eukaryota
KEGG koko:K06883,ko:K07870,ko:K07871
KEGG Pathwayko04137,ko04214,map04137,map04214
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000003,GO:0000166,GO:0000226,GO:0000287,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0008088,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009966,GO:0009987,GO:0010033,GO:0010154,GO:0010570,GO:0010646,GO:0010821,GO:0010970,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0019867,GO:0019896,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0030154,GO:0030705,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032592,GO:0032865,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033043,GO:0033993,GO:0034640,GO:0034643,GO:0035639,GO:0035794,GO:0036094,GO:0036211,GO:0040007,GO:0040008,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0046872,GO:0046902,GO:0046907,GO:0046928,GO:0047497,GO:0048308,GO:0048311,GO:0048316,GO:0048468,GO:0048489,GO:0048583,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050896,GO:0051046,GO:0051049,GO:0051056,GO:0051128,GO:0051179,GO:0051234,GO:0051270,GO:0051588,GO:0051640,GO:0051641,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0055081,GO:0055088,GO:0055091,GO:0060237,GO:0060341,GO:0060560,GO:0060632,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072384,GO:0090559,GO:0097159,GO:0097190,GO:0097305,GO:0097345,GO:0097367,GO:0097479,GO:0097480,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:0098930,GO:0099003,GO:0099098,GO:0099111,GO:0099177,GO:0140056,GO:1900428,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1902108,GO:1902110,GO:1902513,GO:1902531,GO:1902686,GO:1903338,GO:1903530,GO:1905710,GO:1990456
Exons4
Evalue1.22e-45
EggNOG OGsCOG1100@1|root,KOG1707@2759|Eukaryota
Ec32 ortholog descriptionMiro-related GTP-ase 1
Ec32 orthologEc-27_005710.1
DescriptionGTPase activity
Cds size606
COG categoryF
BRITEko00000,ko00001,ko01000,ko03029,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.1418836-CDS-P-wetherbeei_contig5686:1934..19711683186844.1418836-CDS-P-wetherbeei_contig5686:1934..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5686 1935..1971 +
1683186844.1574354-CDS-P-wetherbeei_contig5686:2199..23401683186844.1574354-CDS-P-wetherbeei_contig5686:2199..2340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5686 2200..2340 +
1683186844.168869-CDS-P-wetherbeei_contig5686:2493..27081683186844.168869-CDS-P-wetherbeei_contig5686:2493..2708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5686 2494..2708 +
1683186844.183934-CDS-P-wetherbeei_contig5686:3352..35651683186844.183934-CDS-P-wetherbeei_contig5686:3352..3565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5686 3353..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5686.1.1prot_P-wetherbeei_contig5686.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5686 1935..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5686.1.1

>prot_P-wetherbeei_contig5686.1.1 ID=prot_P-wetherbeei_contig5686.1.1|Name=mRNA_P-wetherbeei_contig5686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MKSHVRILVCGDEKVGKSSLISALVSQHFSRRVPPVMTDVNIPPDESDDG
VSTTICDSSADPKHRAELLQKICEADAIVLLWDVERPDTYSHLGSFWLPL
IAANTEVQPAGKEDGAVTGRLQGGLDATNSAQMDWLMERFGMVRAAFALE
CSAKRLLGVAEVFQQAHSMAVYPMVPLYDIHKRQLRPAFSRAVRRIFRLN
DL
back to top

mRNA from alignment at P-wetherbeei_contig5686:1935..3565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5686.1.1 ID=mRNA_P-wetherbeei_contig5686.1.1|Name=mRNA_P-wetherbeei_contig5686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1631bp|location=Sequence derived from alignment at P-wetherbeei_contig5686:1935..3565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGCACGTTCGAATCCTCGTGTGTGGCGACGGTGAGCCATCGCG CGGAGACGAGAAGCGTCCTCATGGTCAAGTATTCGCTTCTTCACGTTACA TCGTCTTCTCTCCTTCAAATGATGTGTTGACGAGATGAAAAGCAATCTGC TAGGAGCGTTTGGCGATCCCTGCCGCTCGCCATTTTATCGATTCGCCTTT CTCCTGTTGTCATTGCCGCCGCAGCGCTGTCTCTCCACAATTCCTGTCAC TCCCCTTTTCTGCAGAGAAAGTCGGCAAGTCCAGCCTTATCAGCGCGCTT GTCTCGCAGCACTTCTCGCGGCGCGTGCCGCCGGTGATGACGGATGTGAA CATTCCGCCCGATGAGAGCGACGATGGCGTGTCGACGACAATCTGCGATT CTTCGGGTGCGCGGAATTGAAAGCTACGTGCGTCGACATATTTCTGGGCC CTAGTGATTTTTTTTTTCTGCGCCTTTCTTTCAATGCCATCGCCCACAGT CCACCTCGAACTCAAATTGCACATTGCAAGTGCCGCCGCCTCCTAAATGC CATCCGCAGCGGATCCGAAGCATCGCGCCGAGCTGCTGCAGAAGATCTGC GAGGCGGACGCCATCGTGCTCCTATGGGACGTCGAGCGGCCCGACACGTA CAGCCACCTCGGTTCCTTCTGGCTGCCCCTCATCGCCGCAAATACAGAGG TACAGCCGGCGGGAAAAGAAGACGGGGCTGTTACGGGGCGGTTACAGGGC GGTTTGGACGCGACAAACAGCGCTGTGCCGGAAGATGGTGGTCATGATGA GGCATTTGGATTGCGAGATGGATTGCGTCAACTCAGGCAGATTAAACAAT GTAACTCGTCCATATCTGCTCTTTGGATTGTTTGCTAATCCGCGGCTGCG TTTGGGCTTGCAAATCCTTTGCGGTTAGACTAGTCTATTGAGTGTTGTGT GAGAAACGTTCTTTTTACGGAGTGATCCTTCTGGTTCGCCCACAACAAAG CTTGTTGGTCATATTTCCTGCTCGATTTCCCGGTGATTGTCGCGTCACCG TTCGTAACTCGCAATTTGCAAATCAAACATCCTGGGCCTGCTCCTGCCTC CCATGACGGCCCCACTGTGTATCACGCAGGATGTTCCGGTAGTGGTGGTT TGCAACAAGGTCGACAAGAGAGCGGAGGGAGACGACGTTGGTGACTACGC GGCGGAGTTGAAGCAGCAGGCGAGTCATCCTTTTGTGGAAGGCGTCCCTA ATAGGTTGTCCTTTGAACAAGAAAGATGCAGTGCAATGATTGGGTTTGTG ACGAGCTTTTCGTTGTCCTATCGTTTCCCCCCCAATACAATCAAACGGAA TGCCAGCCATAACTGCATCGCCATGGTTTTTAACCTCCTCTATTTTCCAC GGGACGGCGGCGGAACAGCAGATGGACTGGCTGATGGAGCGGTTCGGGAT GGTGCGGGCGGCGTTCGCGCTCGAATGCTCAGCGAAGCGGCTGCTCGGTG TGGCGGAAGTGTTCCAGCAGGCGCACTCGATGGCCGTCTACCCCATGGTG CCGCTCTACGACATTCACAAGCGGCAGTTGCGGCCGGCCTTCTCGCGGGC TGTGCGCCGCATTTTCCGTCTCAACGACCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5686:1935..3565+

>mRNA_P-wetherbeei_contig5686.1.1 ID=mRNA_P-wetherbeei_contig5686.1.1|Name=mRNA_P-wetherbeei_contig5686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig5686:1935..3565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGCACGTTCGAATCCTCGTGTGTGGCGACGAGAAAGTCGGCAA
GTCCAGCCTTATCAGCGCGCTTGTCTCGCAGCACTTCTCGCGGCGCGTGC
CGCCGGTGATGACGGATGTGAACATTCCGCCCGATGAGAGCGACGATGGC
GTGTCGACGACAATCTGCGATTCTTCGGCGGATCCGAAGCATCGCGCCGA
GCTGCTGCAGAAGATCTGCGAGGCGGACGCCATCGTGCTCCTATGGGACG
TCGAGCGGCCCGACACGTACAGCCACCTCGGTTCCTTCTGGCTGCCCCTC
ATCGCCGCAAATACAGAGGTACAGCCGGCGGGAAAAGAAGACGGGGCTGT
TACGGGGCGGTTACAGGGCGGTTTGGACGCGACAAACAGCGCTCAGATGG
ACTGGCTGATGGAGCGGTTCGGGATGGTGCGGGCGGCGTTCGCGCTCGAA
TGCTCAGCGAAGCGGCTGCTCGGTGTGGCGGAAGTGTTCCAGCAGGCGCA
CTCGATGGCCGTCTACCCCATGGTGCCGCTCTACGACATTCACAAGCGGC
AGTTGCGGCCGGCCTTCTCGCGGGCTGTGCGCCGCATTTTCCGTCTCAAC
GACCTG
back to top