mRNA_P-wetherbeei_contig56846.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56846.1.1
Unique NamemRNA_P-wetherbeei_contig56846.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56846.1.1 vs. uniprot
Match: A0A1M5QP43_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5QP43_9BRAD)

HSP 1 Score: 49.3 bits (116), Expect = 5.980e-5
Identity = 41/126 (32.54%), Postives = 57/126 (45.24%), Query Frame = 1 
Query:   22 SGPQRAERIGSNLYRVSIGEFRSDDPIQRENYTLLRAAETAQGEGGTHFVIVNLGDQAGGSG---PASRTS----------------------GQTL-VRVLSLEPGIEPPVGAVSATEIIQFFGP 321
            +G   A++I ++ +R+             ++Y LL+AAET Q  GGTHF I++  D +  S    P S T+                      GQ + +RVL L PG     G  SA EIIQF GP
Sbjct:   26 TGGVAAQQITADTWRIQSRGNAYTGASTVQDYVLLKAAETTQAAGGTHFQIISAADASRASTLVTPGSSTTTFVGNQAFTNTTPGSVDTVIKPGQDVYIRVLKLPPGAAAQ-GVYSAAEIIQFTGP 150
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BLAST of mRNA_P-wetherbeei_contig56846.1.1 vs. uniprot
Match: A0A1C3UQ85_9BRAD (Uncharacterized protein n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1C3UQ85_9BRAD)

HSP 1 Score: 48.9 bits (115), Expect = 8.470e-5
Identity = 41/125 (32.80%), Postives = 55/125 (44.00%), Query Frame = 1 
Query:   22 SGPQRAERIGSNLYRVSIGEFRSDDPIQRENYTLLRAAETAQGEGGTHFVIVNLGDQAGGSG---PASRTS----------------------GQTL-VRVLSLEPGIEPPVGAVSATEIIQFFG 318
            +G   A++I ++ +R+             ++Y LL+AAET Q  GGTHF IV+  D +  S    P S T+                      GQ + VRVL L     P  G  SA EIIQF G
Sbjct:   26 TGGVAAQQITADTWRIQSRGNAYTGAATVQDYVLLKAAETTQSAGGTHFQIVSAADASRASTIVTPGSSTTTLVGNQAFTTTSPGSVDTVIKPGQDVFVRVLKLPLTTPPTAGLYSAAEIIQFVG 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1M5QP43_9BRAD5.980e-532.54Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]
A0A1C3UQ85_9BRAD8.470e-532.80Uncharacterized protein n=5 Tax=Bradyrhizobiaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56846contigP-wetherbeei_contig56846:116..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog319003.Bra1253DRAFT_05345
Model size321
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.25e-05
EggNOG OGs2EGK3@1|root,33AC8@2|Bacteria,1NP1C@1224|Proteobacteria,2UJD9@28211|Alphaproteobacteria,3K1RS@41294|Bradyrhizobiaceae
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.9344811-CDS-P-wetherbeei_contig56846:115..4361683186843.9344811-CDS-P-wetherbeei_contig56846:115..436Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56846 116..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56846.1.1prot_P-wetherbeei_contig56846.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56846 116..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56846.1.1

>prot_P-wetherbeei_contig56846.1.1 ID=prot_P-wetherbeei_contig56846.1.1|Name=mRNA_P-wetherbeei_contig56846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MPSFASPSGPQRAERIGSNLYRVSIGEFRSDDPIQRENYTLLRAAETAQG
EGGTHFVIVNLGDQAGGSGPASRTSGQTLVRVLSLEPGIEPPVGAVSATE
IIQFFGP
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mRNA from alignment at P-wetherbeei_contig56846:116..436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56846.1.1 ID=mRNA_P-wetherbeei_contig56846.1.1|Name=mRNA_P-wetherbeei_contig56846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig56846:116..436+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGTTCGCAAGCCCGTCGGGCCCACAGCGCGCCGAACGGATCGG
CAGCAACCTGTATCGCGTTTCGATCGGGGAATTCAGGTCCGACGACCCCA
TTCAGCGTGAGAACTACACGCTCTTGCGCGCCGCAGAGACGGCGCAAGGC
GAGGGCGGCACGCACTTCGTCATCGTCAATCTGGGCGATCAGGCCGGTGG
ATCGGGCCCCGCCTCGCGGACCAGCGGTCAGACTCTCGTGCGCGTTTTGA
GCCTCGAGCCGGGAATCGAGCCGCCTGTCGGCGCCGTATCGGCGACCGAG
ATCATCCAGTTCTTCGGACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56846:116..436+

>mRNA_P-wetherbeei_contig56846.1.1 ID=mRNA_P-wetherbeei_contig56846.1.1|Name=mRNA_P-wetherbeei_contig56846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig56846:116..436+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGTTCGCAAGCCCGTCGGGCCCACAGCGCGCCGAACGGATCGG
CAGCAACCTGTATCGCGTTTCGATCGGGGAATTCAGGTCCGACGACCCCA
TTCAGCGTGAGAACTACACGCTCTTGCGCGCCGCAGAGACGGCGCAAGGC
GAGGGCGGCACGCACTTCGTCATCGTCAATCTGGGCGATCAGGCCGGTGG
ATCGGGCCCCGCCTCGCGGACCAGCGGTCAGACTCTCGTGCGCGTTTTGA
GCCTCGAGCCGGGAATCGAGCCGCCTGTCGGCGCCGTATCGGCGACCGAG
ATCATCCAGTTCTTCGGACCC
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