mRNA_P-wetherbeei_contig5681.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5681.2.1
Unique NamemRNA_P-wetherbeei_contig5681.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5681.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5681contigP-wetherbeei_contig5681:1263..1984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size723
Hectar predicted targeting categorymitochondrion
Exons1
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.7057326-CDS-P-wetherbeei_contig5681:1262..19701683186843.7057326-CDS-P-wetherbeei_contig5681:1262..1970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5681 1263..1970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.717528-UTR-P-wetherbeei_contig5681:1970..19841683186843.717528-UTR-P-wetherbeei_contig5681:1970..1984Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5681 1971..1984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5681.2.1prot_P-wetherbeei_contig5681.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5681 1263..1970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5681.2.1

>prot_P-wetherbeei_contig5681.2.1 ID=prot_P-wetherbeei_contig5681.2.1|Name=mRNA_P-wetherbeei_contig5681.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MLHKVVARGSTTLNIFHRALSMGERASVTSLGSSAHSQGGHDGHCGGGGD
GGGDGGGDGGVITASQQQPGGILGGSNHSHRSHHSAALKPDPRAAANKGG
IFKRMVGNIFRGRKTRRVHGEEGGSRDESITGFGETTEREMASNSGAGGA
GNDRGDSGGRTGGGGGGSRERASPRSTDNARRPSRAGSDVQSGRSRRHSD
SAVQRTQSNSFRQVLAERSSRSRDSLHALQAGASSD
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mRNA from alignment at P-wetherbeei_contig5681:1263..1984-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5681.2.1 ID=mRNA_P-wetherbeei_contig5681.2.1|Name=mRNA_P-wetherbeei_contig5681.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=722bp|location=Sequence derived from alignment at P-wetherbeei_contig5681:1263..1984- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCAGTTCAATGCTGCACAAGGTGGTGGCTCGAGGCAGCACCACG
CTAAACATCTTCCACCGCGCTCTGTCCATGGGCGAGCGGGCCAGCGTGAC
CTCCTTGGGCTCGAGTGCCCACAGCCAGGGCGGCCATGACGGTCATTGCG
GCGGCGGCGGAGACGGAGGCGGCGATGGCGGAGGGGACGGCGGCGTTATA
ACTGCGTCACAACAACAACCCGGCGGCATTCTGGGCGGCAGCAACCACAG
CCATCGCAGCCACCACAGCGCCGCTCTTAAGCCGGATCCGCGGGCGGCGG
CGAACAAGGGAGGGATTTTCAAGCGGATGGTCGGCAACATCTTTCGCGGT
AGAAAGACCCGGCGAGTACATGGCGAGGAAGGCGGCAGCAGGGACGAAAG
CATCACCGGCTTCGGCGAGACTACTGAGCGGGAAATGGCTTCCAACAGTG
GCGCTGGCGGTGCTGGGAATGACCGTGGTGACAGCGGCGGTCGTACTGGC
GGTGGCGGCGGCGGCAGCCGGGAGAGAGCGAGCCCCCGTAGCACTGACAA
TGCCAGGCGCCCAAGCAGGGCGGGATCAGATGTACAAAGTGGACGCTCGC
GGCGTCACTCGGACAGTGCTGTGCAACGAACGCAGAGCAATTCTTTCCGT
CAGGTTCTCGCAGAGCGCTCGTCTCGCTCCCGCGACAGTTTGCATGCTTT
GCAGGCTGGTGCATCGAGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5681:1263..1984-

>mRNA_P-wetherbeei_contig5681.2.1 ID=mRNA_P-wetherbeei_contig5681.2.1|Name=mRNA_P-wetherbeei_contig5681.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig5681:1263..1984- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCACAAGGTGGTGGCTCGAGGCAGCACCACGCTAAACATCTTCCA
CCGCGCTCTGTCCATGGGCGAGCGGGCCAGCGTGACCTCCTTGGGCTCGA
GTGCCCACAGCCAGGGCGGCCATGACGGTCATTGCGGCGGCGGCGGAGAC
GGAGGCGGCGATGGCGGAGGGGACGGCGGCGTTATAACTGCGTCACAACA
ACAACCCGGCGGCATTCTGGGCGGCAGCAACCACAGCCATCGCAGCCACC
ACAGCGCCGCTCTTAAGCCGGATCCGCGGGCGGCGGCGAACAAGGGAGGG
ATTTTCAAGCGGATGGTCGGCAACATCTTTCGCGGTAGAAAGACCCGGCG
AGTACATGGCGAGGAAGGCGGCAGCAGGGACGAAAGCATCACCGGCTTCG
GCGAGACTACTGAGCGGGAAATGGCTTCCAACAGTGGCGCTGGCGGTGCT
GGGAATGACCGTGGTGACAGCGGCGGTCGTACTGGCGGTGGCGGCGGCGG
CAGCCGGGAGAGAGCGAGCCCCCGTAGCACTGACAATGCCAGGCGCCCAA
GCAGGGCGGGATCAGATGTACAAAGTGGACGCTCGCGGCGTCACTCGGAC
AGTGCTGTGCAACGAACGCAGAGCAATTCTTTCCGTCAGGTTCTCGCAGA
GCGCTCGTCTCGCTCCCGCGACAGTTTGCATGCTTTGCAGGCTGGTGCAT
CGAGCGAT
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