mRNA_P-wetherbeei_contig56807.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56807.2.1
Unique NamemRNA_P-wetherbeei_contig56807.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56807.2.1 vs. uniprot
Match: UPI00135B855F (hypothetical protein n=1 Tax=Microbulbifer sp. ALW1 TaxID=1516059 RepID=UPI00135B855F)

HSP 1 Score: 61.6 bits (148), Expect = 1.030e-8
Identity = 34/122 (27.87%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    1 HRDRFKDDRMQDAIPDTLGYMLQKLSEAFYAPDRSIDGVGSVEAVQDALESVRSYLLRQDVDVDAFDFLKLIYDELVYPLAQLRAYFNGEPTTIADRKMGGIVAFYVTTKVGELRSFAADFD 366
            HR   K+ ++ D  P T+ Y L KL EA    D+   G   ++ +Q+ L+  RS L  +  + D ++ +   Y++L YP+A+L+ YF+ +  +  + K   I   ++   +  L+  AA+ D
Sbjct:  183 HRKMHKEVKLVDCFPQTIRYFLGKLFEATSGEDKYSLGAMHLDLIQNCLDDFRSKLEARS-EWDVYESINYHYEQLSYPMAELKMYFDSKSDSKLNDKDAYIFVSFLVEHIDTLKQIAAEID 303
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BLAST of mRNA_P-wetherbeei_contig56807.2.1 vs. uniprot
Match: UPI00099B4A85 (hypothetical protein n=1 Tax=Dehalococcoides mccartyi TaxID=61435 RepID=UPI00099B4A85)

HSP 1 Score: 58.2 bits (139), Expect = 1.790e-7
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:    1 HRDRFKDDRMQDAIPDTLGYMLQKLSEAFYAPDRSIDGVGSVEAVQDALESVRSYLLRQDVDVDAFDFLKLIYDELVYPLAQLRAYFNGEPTTIADRKMGGIVAFYVTTKVGELRSFAADFD 366
            HR +++D R+ +  P TLGY  QK+  A    +    G   +  V + +E+ +  L  +   + A+D +  + + + YP+ +L  YF G  T  A  K   I +F+V   + EL+S A + D
Sbjct:  184 HRAKYRDQRLIEVFPSTLGYYFQKIGGAIDRSEPGDFGTMHIRLVAEVIEAFKERLKERGA-LQAYDSVVDLIELIEYPVQELTKYFAGRSTLNA--KDAHIFSFFVYKHIEELKSIAKEID 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56807.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00135B855F1.030e-827.87hypothetical protein n=1 Tax=Microbulbifer sp. ALW... [more]
UPI00099B4A851.790e-728.69hypothetical protein n=1 Tax=Dehalococcoides mccar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56807contigP-wetherbeei_contig56807:150..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1190603.AJYD01000097_gene2400
Model size366
Max annot lvl135623|Vibrionales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.8e-08
EggNOG OGs28MAQ@1|root,2ZAPC@2|Bacteria,1PTEN@1224|Proteobacteria,1S3M7@1236|Gammaproteobacteria,1Y1CE@135623|Vibrionales
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.6218905-CDS-P-wetherbeei_contig56807:149..4881683186843.6218905-CDS-P-wetherbeei_contig56807:149..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56807 150..488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.6332273-UTR-P-wetherbeei_contig56807:488..5151683186843.6332273-UTR-P-wetherbeei_contig56807:488..515Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56807 489..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56807.2.1prot_P-wetherbeei_contig56807.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56807 150..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56807.2.1

>prot_P-wetherbeei_contig56807.2.1 ID=prot_P-wetherbeei_contig56807.2.1|Name=mRNA_P-wetherbeei_contig56807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MQDAIPDTLGYMLQKLSEAFYAPDRSIDGVGSVEAVQDALESVRSYLLRQ
DVDVDAFDFLKLIYDELVYPLAQLRAYFNGEPTTIADRKMGGIVAFYVTT
KVGELRSFAADFD
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mRNA from alignment at P-wetherbeei_contig56807:150..515-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56807.2.1 ID=mRNA_P-wetherbeei_contig56807.2.1|Name=mRNA_P-wetherbeei_contig56807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig56807:150..515- (Phaeothamnion wetherbeei SAG_119_79)
CATCGAGATCGCTTCAAGGATGACCGTATGCAAGACGCCATTCCAGACAC
CCTCGGTTACATGCTACAAAAGCTCTCGGAAGCGTTCTATGCTCCAGATC
GTTCAATTGATGGTGTCGGCAGTGTCGAAGCAGTCCAGGACGCTTTGGAG
AGCGTGCGATCCTACCTTCTACGTCAGGATGTGGACGTCGACGCATTCGA
CTTCCTCAAACTGATTTATGACGAACTGGTCTATCCGCTTGCACAGTTGC
GGGCCTATTTCAACGGGGAACCGACGACCATTGCCGACCGAAAAATGGGC
GGCATCGTCGCCTTCTACGTGACCACAAAAGTCGGTGAACTGCGCTCATT
CGCCGCCGATTTCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56807:150..515-

>mRNA_P-wetherbeei_contig56807.2.1 ID=mRNA_P-wetherbeei_contig56807.2.1|Name=mRNA_P-wetherbeei_contig56807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56807:150..515- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGACGCCATTCCAGACACCCTCGGTTACATGCTACAAAAGCTCTC
GGAAGCGTTCTATGCTCCAGATCGTTCAATTGATGGTGTCGGCAGTGTCG
AAGCAGTCCAGGACGCTTTGGAGAGCGTGCGATCCTACCTTCTACGTCAG
GATGTGGACGTCGACGCATTCGACTTCCTCAAACTGATTTATGACGAACT
GGTCTATCCGCTTGCACAGTTGCGGGCCTATTTCAACGGGGAACCGACGA
CCATTGCCGACCGAAAAATGGGCGGCATCGTCGCCTTCTACGTGACCACA
AAAGTCGGTGAACTGCGCTCATTCGCCGCCGATTTCGAT
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