mRNA_P-wetherbeei_contig5679.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5679.1.1
Unique NamemRNA_P-wetherbeei_contig5679.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5679.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5679contigP-wetherbeei_contig5679:653..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1665
Hectar predicted targeting categoryother localisation
Exons1
Cds size1665
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.208653-CDS-P-wetherbeei_contig5679:652..23171683186843.208653-CDS-P-wetherbeei_contig5679:652..2317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5679 653..2317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5679.1.1prot_P-wetherbeei_contig5679.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5679 653..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5679.1.1

>prot_P-wetherbeei_contig5679.1.1 ID=prot_P-wetherbeei_contig5679.1.1|Name=mRNA_P-wetherbeei_contig5679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=555bp
NDYNDELADLYRRFGMPSRPVLLTGHDDWAFRESLEAHEQRQKAERAAER
AARSRRNGRGGGSSGGSSNFGAGAAMGLGSSGDGGDAVAGGSGDGGGGGS
GYQPLPPFVTVHPAAWSMSARPHAAEIDWSVDPAVGVEGVARDGCSCGCK
GVGGGAVCGCGNTAAAAAAGPPGQGISASRKGKDSSGRSDGGRGGVGSGS
NNTAGQSRNKGKDPKGGEASSTGGLGGSSGRSSGSGNDVTLGAAPATAVA
AATAGSAHAPPPSWAAVHPASVVVPPPSPPSNEDDYVCQEIAACWHKARE
LALKNIYWLRSLQLAGGRERALARLWDATEDASAAAVEMLAASGLGGDAC
RPDGAYYLEEDWPYPEQEEYGGGKAGGDGGSGGSGNCDASDWSSDSAAAA
AGGGDGGGGRASGRSGEEENVKTVGGGKVRRTGGEDGGEESPDALPRPRR
SAAAAGESRRKGAAQPRTSAGALAAAAAPPAAIAVVRPWQTVAKRSDPAM
HFFRALPLADADFLWGLRPGSRVEARDAYGSWALADVISCRCDLPTWSAP
AGNET
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mRNA from alignment at P-wetherbeei_contig5679:653..2317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5679.1.1 ID=mRNA_P-wetherbeei_contig5679.1.1|Name=mRNA_P-wetherbeei_contig5679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1665bp|location=Sequence derived from alignment at P-wetherbeei_contig5679:653..2317- (Phaeothamnion wetherbeei SAG_119_79)
AACGACTACAACGACGAGCTCGCCGACCTTTACCGGCGGTTTGGGATGCC
CAGCCGTCCCGTGCTGCTGACGGGCCACGACGATTGGGCCTTCCGAGAGT
CCCTGGAGGCGCACGAGCAGCGCCAGAAGGCGGAGCGGGCAGCGGAACGT
GCGGCACGCAGTCGCCGCAACGGCCGTGGAGGCGGCAGCAGCGGCGGCAG
CAGTAACTTCGGCGCGGGCGCGGCCATGGGCCTTGGAAGCAGCGGCGACG
GCGGCGACGCTGTTGCTGGCGGCAGCGGTGACGGTGGTGGCGGCGGCAGC
GGCTATCAGCCGTTGCCGCCTTTCGTAACTGTTCACCCGGCGGCGTGGAG
CATGAGCGCTCGGCCGCATGCGGCGGAGATCGACTGGTCTGTGGATCCTG
CTGTGGGTGTGGAGGGCGTTGCACGGGACGGTTGTAGCTGCGGATGCAAA
GGCGTCGGGGGCGGTGCTGTTTGCGGCTGTGGCAACACCGCTGCTGCTGC
CGCCGCTGGACCGCCGGGGCAGGGAATCAGCGCCTCGAGGAAGGGGAAAG
ATTCCAGTGGAAGGTCGGACGGTGGCAGGGGCGGGGTCGGCAGCGGCAGC
AACAACACTGCTGGCCAGAGCCGAAACAAGGGCAAGGACCCAAAGGGCGG
AGAGGCCAGCAGTACCGGCGGCCTCGGCGGCAGCAGCGGCAGGAGCAGCG
GAAGCGGCAACGATGTCACATTGGGCGCCGCTCCCGCGACGGCCGTCGCA
GCCGCCACCGCCGGCTCCGCCCACGCCCCTCCACCGTCGTGGGCGGCTGT
GCACCCGGCGTCCGTGGTGGTCCCGCCGCCGTCGCCGCCGTCCAACGAAG
ACGACTACGTGTGCCAGGAGATCGCCGCCTGCTGGCACAAGGCACGAGAG
CTCGCCCTGAAGAATATATACTGGCTGCGGAGCCTCCAGCTCGCCGGCGG
ACGGGAGCGGGCGCTGGCGAGACTGTGGGACGCGACGGAGGACGCGTCCG
CCGCCGCCGTGGAGATGCTGGCGGCCAGCGGCCTTGGCGGCGATGCATGC
CGCCCCGACGGCGCGTACTACCTTGAGGAGGACTGGCCGTACCCAGAGCA
GGAGGAGTACGGCGGCGGGAAAGCTGGCGGCGACGGCGGCAGCGGCGGCA
GCGGCAACTGCGACGCCAGTGACTGGAGCAGCGACAGTGCTGCTGCCGCT
GCCGGCGGCGGCGACGGCGGCGGCGGTAGGGCTAGCGGCCGAAGCGGCGA
GGAAGAGAACGTGAAGACGGTGGGAGGCGGAAAAGTGAGACGCACCGGCG
GCGAGGACGGCGGAGAAGAGAGTCCAGACGCATTGCCGCGGCCCCGACGG
AGCGCTGCGGCGGCGGGCGAGTCGCGGCGCAAAGGCGCGGCACAGCCACG
GACTTCTGCGGGAGCATTGGCCGCGGCGGCAGCGCCGCCGGCGGCCATCG
CTGTGGTGCGACCCTGGCAGACCGTCGCCAAGCGCTCTGACCCTGCTATG
CACTTCTTCCGGGCGCTGCCGCTTGCCGACGCCGACTTCCTTTGGGGGCT
CCGCCCCGGCAGCCGCGTCGAGGCGCGCGATGCTTACGGCAGCTGGGCTT
TGGCCGATGTGATATCCTGCCGTTGTGACCTCCCCACCTGGTCGGCTCCA
GCCGGGAACGAAACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5679:653..2317-

>mRNA_P-wetherbeei_contig5679.1.1 ID=mRNA_P-wetherbeei_contig5679.1.1|Name=mRNA_P-wetherbeei_contig5679.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1665bp|location=Sequence derived from alignment at P-wetherbeei_contig5679:653..2317- (Phaeothamnion wetherbeei SAG_119_79)
AACGACTACAACGACGAGCTCGCCGACCTTTACCGGCGGTTTGGGATGCC
CAGCCGTCCCGTGCTGCTGACGGGCCACGACGATTGGGCCTTCCGAGAGT
CCCTGGAGGCGCACGAGCAGCGCCAGAAGGCGGAGCGGGCAGCGGAACGT
GCGGCACGCAGTCGCCGCAACGGCCGTGGAGGCGGCAGCAGCGGCGGCAG
CAGTAACTTCGGCGCGGGCGCGGCCATGGGCCTTGGAAGCAGCGGCGACG
GCGGCGACGCTGTTGCTGGCGGCAGCGGTGACGGTGGTGGCGGCGGCAGC
GGCTATCAGCCGTTGCCGCCTTTCGTAACTGTTCACCCGGCGGCGTGGAG
CATGAGCGCTCGGCCGCATGCGGCGGAGATCGACTGGTCTGTGGATCCTG
CTGTGGGTGTGGAGGGCGTTGCACGGGACGGTTGTAGCTGCGGATGCAAA
GGCGTCGGGGGCGGTGCTGTTTGCGGCTGTGGCAACACCGCTGCTGCTGC
CGCCGCTGGACCGCCGGGGCAGGGAATCAGCGCCTCGAGGAAGGGGAAAG
ATTCCAGTGGAAGGTCGGACGGTGGCAGGGGCGGGGTCGGCAGCGGCAGC
AACAACACTGCTGGCCAGAGCCGAAACAAGGGCAAGGACCCAAAGGGCGG
AGAGGCCAGCAGTACCGGCGGCCTCGGCGGCAGCAGCGGCAGGAGCAGCG
GAAGCGGCAACGATGTCACATTGGGCGCCGCTCCCGCGACGGCCGTCGCA
GCCGCCACCGCCGGCTCCGCCCACGCCCCTCCACCGTCGTGGGCGGCTGT
GCACCCGGCGTCCGTGGTGGTCCCGCCGCCGTCGCCGCCGTCCAACGAAG
ACGACTACGTGTGCCAGGAGATCGCCGCCTGCTGGCACAAGGCACGAGAG
CTCGCCCTGAAGAATATATACTGGCTGCGGAGCCTCCAGCTCGCCGGCGG
ACGGGAGCGGGCGCTGGCGAGACTGTGGGACGCGACGGAGGACGCGTCCG
CCGCCGCCGTGGAGATGCTGGCGGCCAGCGGCCTTGGCGGCGATGCATGC
CGCCCCGACGGCGCGTACTACCTTGAGGAGGACTGGCCGTACCCAGAGCA
GGAGGAGTACGGCGGCGGGAAAGCTGGCGGCGACGGCGGCAGCGGCGGCA
GCGGCAACTGCGACGCCAGTGACTGGAGCAGCGACAGTGCTGCTGCCGCT
GCCGGCGGCGGCGACGGCGGCGGCGGTAGGGCTAGCGGCCGAAGCGGCGA
GGAAGAGAACGTGAAGACGGTGGGAGGCGGAAAAGTGAGACGCACCGGCG
GCGAGGACGGCGGAGAAGAGAGTCCAGACGCATTGCCGCGGCCCCGACGG
AGCGCTGCGGCGGCGGGCGAGTCGCGGCGCAAAGGCGCGGCACAGCCACG
GACTTCTGCGGGAGCATTGGCCGCGGCGGCAGCGCCGCCGGCGGCCATCG
CTGTGGTGCGACCCTGGCAGACCGTCGCCAAGCGCTCTGACCCTGCTATG
CACTTCTTCCGGGCGCTGCCGCTTGCCGACGCCGACTTCCTTTGGGGGCT
CCGCCCCGGCAGCCGCGTCGAGGCGCGCGATGCTTACGGCAGCTGGGCTT
TGGCCGATGTGATATCCTGCCGTTGTGACCTCCCCACCTGGTCGGCTCCA
GCCGGGAACGAAACT
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