mRNA_P-wetherbeei_contig5677.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5677.2.1
Unique NamemRNA_P-wetherbeei_contig5677.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5677.2.1 vs. uniprot
Match: A0A836C9Q2_9STRA (Eukaryotic cytochrome b561-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.680e-27
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 VHAWTGSILLIVFAAQYVVGIFAFALCKTRILPLTLAGIARWHVLLGKLCFLGCIGVCVNGWADIQMMNVDYGQFPYKAATMLGSASAIAYWGLSASM 294
            VHAWTG+I L+++  QYVVG+ AF + K  + P  L  +  WH  LGKL F   IG C+NGWADIQMM +  GQ  Y +AT+L SASA+AYWGLSA M
Sbjct:  132 VHAWTGAIALLLYFLQYVVGLLAFVVFKRGLAPHALRVVTYWHAALGKLTFFAGIGCCINGWADIQMMMMS-GQPTYGSATLLASASAVAYWGLSACM 228
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BLAST of mRNA_P-wetherbeei_contig5677.2.1 vs. uniprot
Match: A0A0D2N4N5_9CHLO (Cytochrome b561 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N4N5_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 7.040e-26
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 VHAWTGSILLIVFAAQYVVGIFAFALCKTRILPLTLAGIARWHVLLGKLCFLGCIGVCVNGWADIQMMNVDYGQFPYKAATMLGSASAIAYWGLSASM 294
            VHAWT +I+ ++F  QY+VG+  FAL   +    T A +A+WH++LG+L F G I  CV GWAD+QMMNVD+GQ  Y +AT+LG+ +A+  W L+A++
Sbjct:   64 VHAWTSAIIFVLFVLQYLVGLAVFALPLVKSAE-TKASVAKWHIVLGQLTFFGGIAACVTGWADMQMMNVDFGQRNYGSATILGATTAVLLWALAAAV 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5677.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C9Q2_9STRA4.680e-2756.12Eukaryotic cytochrome b561-domain-containing prote... [more]
A0A0D2N4N5_9CHLO7.040e-2648.98Cytochrome b561 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5677contigP-wetherbeei_contig5677:2479..3517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6183.Smp_136400.1
PFAMsCytochrom_B561
Model size294
Max annot lvl33208|Metazoa
KEGG koko:K08360
KEGG TC5.B.2.1
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
Exons2
Evalue0.00028
EggNOG OGsKOG1619@1|root,KOG1619@2759|Eukaryota,39VHP@33154|Opisthokonta,3BEJC@33208|Metazoa,3D2GH@33213|Bilateria
EC1.16.5.1
DescriptionCytochrome b561
Cds size294
COG categoryC
BRITEko00000,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.9690447-CDS-P-wetherbeei_contig5677:2478..25651683186842.9690447-CDS-P-wetherbeei_contig5677:2478..2565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5677 2479..2565 -
1683186842.981562-CDS-P-wetherbeei_contig5677:3310..35171683186842.981562-CDS-P-wetherbeei_contig5677:3310..3517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5677 3311..3517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5677.2.1prot_P-wetherbeei_contig5677.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5677 2479..3517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5677.2.1

>prot_P-wetherbeei_contig5677.2.1 ID=prot_P-wetherbeei_contig5677.2.1|Name=mRNA_P-wetherbeei_contig5677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
VHAWTGSILLIVFAAQYVVGIFAFALCKTRILPLTLAGIARWHVLLGKLC
FLGCIGVCVNGWADIQMMNVDYGQFPYKAATMLGSASAIAYWGLSASM
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mRNA from alignment at P-wetherbeei_contig5677:2479..3517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5677.2.1 ID=mRNA_P-wetherbeei_contig5677.2.1|Name=mRNA_P-wetherbeei_contig5677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-wetherbeei_contig5677:2479..3517- (Phaeothamnion wetherbeei SAG_119_79)
GTACATGCATGGACGGGCTCCATCCTGCTCATCGTCTTTGCGGCGCAGTA
CGTGGTGGGCATCTTCGCCTTCGCGCTATGCAAGACGCGCATCTTACCGT
TGACGCTCGCCGGCATTGCCCGCTGGCACGTGCTTCTGGGAAAGCTGTGC
TTCCTCGGCTGCATCGGCGTCTGCGTCAACGGCTGGGCCGACATTCAGAT
GATGAACGTAAGCTGTCTCGCGTTCCGCATCGGATCATTTCTTTGACTGT
TTGGAATTATCGACGATGCGGTAGTATTTGGAAGAGCAAGACAGAGCCGC
CTCAAATTGCAGTCATCATTTTTCATATGATTGACTGTCGCTATCGAGGT
AAAGGATCTTCCCGCGCGTCCGCACTCCTTCATATCTATCCTCCCTAGCT
TTTTTTGTTCTTTTCAGTCTGTCCTGTGCCACCCGGCTTTCCTCTTTCCT
AATACCCGCTCACCCGGTACCAGCGGGAGCGACATGAGCCACAACAGCGG
CAATCACGGCCCCGCATTGCAGCCCCTGCCACCTTGGCCACCGCTTCCAT
TACCTCTGCTGTCGCTGCCGCTTTTGTCCCTGCAGCTGGCGTCGCTGCCG
CCGCCGTCGCTGCCGGTCGCCAGGCAGCCGAGAAGCGCAGCACCGGCAGC
TTGCCTGACCAGCCCAACGCGCACGGCAAAACCGCTTCTCCTCCGGTCTC
CCCAGTAGACTTCCTGCAGTACCCACAATAACATTTGCACGAAACTGACC
CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCAAAACCCCCCCC
CCACACCCCCCCCCCCCCCCCCCCCCCCCCCCGAAACCCTGCGCCACTTT
GGAACTAGTTGTACCTGAACAACTCTTTATTCCCATCGTATTGATTTATC
TTAATGAAAGCAGCCGCCTCAAACCCCCGCCACCGCCGACTGCCAAATGC
AGGTTGACTACGGCCAGTTCCCATACAAGGCGGCAACGATGCTGGGTTCT
GCCAGCGCCATCGCGTATTGGGGACTCAGCGCCTCCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5677:2479..3517-

>mRNA_P-wetherbeei_contig5677.2.1 ID=mRNA_P-wetherbeei_contig5677.2.1|Name=mRNA_P-wetherbeei_contig5677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig5677:2479..3517- (Phaeothamnion wetherbeei SAG_119_79)
GTACATGCATGGACGGGCTCCATCCTGCTCATCGTCTTTGCGGCGCAGTA
CGTGGTGGGCATCTTCGCCTTCGCGCTATGCAAGACGCGCATCTTACCGT
TGACGCTCGCCGGCATTGCCCGCTGGCACGTGCTTCTGGGAAAGCTGTGC
TTCCTCGGCTGCATCGGCGTCTGCGTCAACGGCTGGGCCGACATTCAGAT
GATGAACGTTGACTACGGCCAGTTCCCATACAAGGCGGCAACGATGCTGG
GTTCTGCCAGCGCCATCGCGTATTGGGGACTCAGCGCCTCCATG
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