mRNA_P-wetherbeei_contig5674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5674.1.1
Unique NamemRNA_P-wetherbeei_contig5674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.370e-70
Identity = 145/401 (36.16%), Postives = 218/401 (54.36%), Query Frame = 1
Query:   73 LQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSC-IARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            +++ +A +W+ AC++E  SL +++ +  V  P+ RK + S+WVF  K    G I +YK R+V KG LQ  GVDF+     APVA     R ++++AA     LHQMDV+TA+LN LL+EE+YM+ P+GF       +     C + R+LYGL+QS   WN TI EF  +IG     +  CV+V+R   +++ +VLYV+ L+L  N    L   +  +  RF + DLGE+ + L M V RDD +G V + Q  ++  + A++GM+   P + P D    ++    E          T     YRS +G++MY     R D+A  V  L+++AA P   H  A KRVLRY   TPT G+ +                  +   EL+GYSDA+ AG +++ RST
Sbjct:    1 MESSDASKWKEACESEFESLCKNKTWELVPLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFE--ETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGF----VDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCE---GGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRF----------------AGSGDGELIGYSDADWAGDIETRRST 376          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A8H8JJR7_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JJR7_9AGAM)

HSP 1 Score: 233 bits (595), Expect = 2.200e-66
Identity = 145/407 (35.63%), Postives = 220/407 (54.05%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            P +++EA+  P+A  W AA   E+ S+ +H+V++ V RP DR  +K RWVF  KR   GEI++YK R+V KG  Q PGVD+    +S+PVA  +  R ++++ AA    L Q+DV+TA+L+  L EE+YME P+GF +    GR      + +++YGL+Q+A  +   +     ++G     +   VF RR G  + II+ +V+ +LL G S   L++++ ++     + DLGE    + + + R+ +AGT+++ Q  YI D+ AR+GM        P            E P     D  T D   Y+ +IGSLMYA    R D+AY    LA++AA P   H  AA R+LRY   +  LG++Y+R                  +LEL GY DA+ AG   S RST
Sbjct:  171 PQSFQEAMNRPDANLWLAAMLLEMKSIEQHKVWTRVNRPTDRNIVKCRWVFDYKRGPDGEILRYKARLVAKGFSQRPGVDYT--EISSPVAAADSLRTLLSIVAALELELLQIDVKTAFLHGELDEEIYMEQPEGFVE----GRGQVWE-LRKAIYGLKQAARAFYLRLKSILEQMGFKRCETDHAVFYRRDGEELAIILAHVDDMLLAGTSLSFLEMIKADLAKHLEIVDLGEAKMFVGIEIERNRSAGTLKISQRRYINDILARFGMTGCKTCATPM----------AESPNLPKLDESTIDRTRYQQLIGSLMYAMISTRADIAYATGLLAQHAANPGKEHWDAAHRILRYLNSSIDLGIIYHRSD----------------NLELQGYVDADYAGDKSSSRST 544          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A401GI08_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GI08_9APHY)

HSP 1 Score: 228 bits (581), Expect = 6.400e-65
Identity = 134/383 (34.99%), Postives = 208/383 (54.31%), Query Frame = 1
Query:   13 LSLGALPSGEPAAPNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSC-IARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCD----YRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLY 1146
            +++ A  + +   P    +A ++ E  +W+ A   E+  L     +  V  PKDRK + ++WV   K N  GEI+KYK R+V KG  Q PG+D+    +  PV  +   + ++ LAA   W + QMDV+ AYLN  LKEE+YM+ P+G+S         +  C + ++LYGL+QS   WN  ++   ++ G    +S PC ++R +G  I I+ ++V+ LL+  N    +  L+ E+   F V DLGE   ++ + + RD +  T+++ Q  YI+ +  + G+  AN   +P D +T   V   E P  D       D CD    Y S++GSLMYAA   R D+A+ V+ L+ + A P  AH  AAKRVLRY  GT  LG++Y
Sbjct:  192 IAMSAHGNADADEPKTLSDAKRSLEWPKWEQAVQTELNQLQGMETWELVEPPKDRKPIGNKWVLVKKTNKEGEIIKYKARLVAKGYSQIPGMDYTETFV--PVVCLETIQAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMQQPEGYSD------GTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDAGFKRLFSDPCAYIRIKGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANMVGMPLDPNT---VLEKEEPETD-------DECDRDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYLSGTQELGIIY 556          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: M5BWJ0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10758 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BWJ0_THACB)

HSP 1 Score: 227 bits (579), Expect = 1.270e-63
Identity = 145/409 (35.45%), Postives = 219/409 (53.55%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSC--IARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            P  + EA+  P+A  W  +   E+AS+ +H V+    RP+ R  ++  WVF+ KR   GEIV+YK R+V KG  Q PGVDF+   +S+PVA  + FR V++        L Q+D++TA+L+ +L+EE+YME P+GF       +D  GS   + ++LYGL+Q+A  +   + E  V +      +   VF RR G ++ II+ +V+ +LL G     L+ ++ E+   F + DLGE    + + + RD  AGT+++ Q  YI+D+  R+GME   P   P            E P     D PT +   Y+  IGSLMYA    R D+AY    LA++AA P   H  A +RVLRY  G+  LG+++ R   +                ELVG+ DA+ AG  ++ RST
Sbjct:  235 PKTFEEAMSRPDAHLWLESMIEELASIEKHGVWKRANRPEHRLVIECMWVFSFKRGPDGEIVRYKARLVAKGYSQRPGVDFE--EISSPVAASDAFRVVLSKVTELDLELLQLDIKTAFLHGVLEEEIYMEQPEGF-------KDSDGSVWRLKKALYGLKQAARAFYLRLREVLVNLRFTRCETDHAVFWRREGENLAIILAHVDDMLLAGKPRAYLEDIKAEMAKSFDIVDLGEPQMFVGVEIERDRKAGTLKISQRRYIEDILKRFGMENCKPCVTPM----------AEVPNLPKLDAPTVNRTLYQRGIGSLMYAMISTRGDIAYATGLLAQHAANPGEEHWKALQRVLRYLRGSTNLGIIFDRSRPS----------------ELVGFVDADYAGDPNTSRST 608          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 226 bits (576), Expect = 3.840e-63
Identity = 134/406 (33.00%), Postives = 215/406 (52.96%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRS 1269
            P   ++ L +P+  +W+ A + E+ SL  + V++ V  PK RK + S+WVF  K +  G   ++K R+V +G  Q  G D+D     +PV      R +IA A   G +LHQMDV+TA+LN  LKEE+YM+ P+GF  +G   ++     + RS+YGL+QS   WN  + E   ++G V     PC++    G  + II +YV+ +LL G S+  +  ++  +   F +KD+GE+ H L +++ +    G + + QA Y +++  ++GME + P   P D +T +             D    D   ++S +GSL+Y +   R D+AY V ++AR+ A PT  H  A KR++RY  GT  LGLLY +                    E +G+SDA+ AG  +  +S
Sbjct:  237 PKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYD--ETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKG---KEHLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAATGE-MFIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVK--------HSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPK----------------ECIGFSDADWAGDQNDRKS 612          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A0L9TAH8_PHAAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TAH8_PHAAN)

HSP 1 Score: 220 bits (561), Expect = 5.750e-63
Identity = 130/407 (31.94%), Postives = 221/407 (54.30%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            P N++EA+   E + W+ A D EI ++ ++  +     PK  K +  +WV+ AK+++ GE+ +YK R+V KG  Q  G+D+D   + APVA +   R +I+LAA   W++HQMDV++A+LN +L+EE+Y+E P G+  +G   + L    + ++LYGL+Q+   WN  I ++F     +       ++++ +G  ILI+ LYV+ L+ TGN+    +  + ++   F + D+G +A+ L + V + +    + + Q  Y +D+  ++ M+ AN    P +    +S            +G   D   Y+S++GSL Y  C  R D+ Y V  ++RY  APT  H  +AKR+LRY  GT + GL Y                  +   +LVGYSD++ +G +D  +ST
Sbjct:   31 PMNFQEAI---EKKSWRKAMDEEIEAIKKNDTWELASLPKGHKAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYD--EVFAPVARLETIRLIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLK---LKKALYGLKQAPRAWNVQIDKYFKAANFIKCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTMEFEMTDMGLMAYYLGIEVKQGNKG--IFITQESYAKDVLKKFKMDDANLVGTPMECGIKLSKD---------EEGEKVDPTLYKSLVGSLRYLTC-TRPDILYAVGVVSRYMEAPTTTHFKSAKRILRYIQGTTSYGLYY----------------SISNDYKLVGYSDSDWSGDMDDRKST 401          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A2V9YD16_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9YD16_9BACT)

HSP 1 Score: 221 bits (562), Expect = 9.170e-63
Identity = 146/409 (35.70%), Postives = 219/409 (53.55%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGW-RLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILI-IVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            P NY+EA++  +A++W+ A   E  S+ ++  ++ V RPKD K +KSRWV   K N       +K R   KG  Q  G D+D     APVA     R + AL A R   ++HQMDV TA+L ++L E +Y+E P+GF      G++ F   + ++LYGL+QS   W   I+E   +     + + PC+++    +   I I LYV+ L++ G++E ++  ++  +  RF +KDLG     L + +    + G+V+L Q  YIQ +  R+GM  +NP   P D  T+V +T I    A        D  +Y  I+G L +AAC+ R D+A  V  L+++   P++ HM AAKRVLRY  GT  LG+ Y   P                 L+L GYSDAN AG +D+ RST
Sbjct:   32 PRNYQEAMEAIDAKQWELAMQKEYNSIMKNDTWTLVPRPKDAKVVKSRWVLLMKDNGL-----HKARFCAKGFTQRWGEDYD--ETFAPVAKYASIRTLFALLAGRKKAKVHQMDVNTAFLYSILDEIVYVEQPEGFV---VPGKEDFVCLLGKALYGLKQSPRAWFHLIAEVLYDFDFKQSTADPCIWIHENENGERIYIALYVDDLIIAGDNEDDILTIKRRLSERFEMKDLGIAKKFLGIEIEYG-SDGSVKLHQNQYIQRLIDRHGMGESNPVATPLD--TSVKLTSITAEEAPA------DPQEYARIVGGLTFAACVTRPDIACTVGQLSQFLNNPSSTHMQAAKRVLRYLQGTSALGITYRPPP-----------------LKLQGYSDANWAGDMDTRRST 404          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A6A3HK30_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HK30_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.510e-62
Identity = 151/421 (35.87%), Postives = 223/421 (52.97%), Query Frame = 1
Query:   25 ALPSGEPAAPNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRSTIKLLL 1287
            AL + E + PN++ +A+++PE+ +W+ AC AEI +   +  +  V RP   + +  +WVF  KR+  G I++YK R+V  G  QT GVD+   S  +PVA++N  R  +A+   RG+ + Q DVETA+LN  L+EE+YM  P+G + R     D     + RSLYGL+Q+A  W+ TI   F+ +G     S PC+FVR   +  + IVLYV+ LL+   +E E   +   +G RFR+K LG+   +L M +  +   G V + QA YI  M AR+G   A+P R P      +  +  E P+ D           YR ++GSL+Y A   R D+   V  L+++   P   H  AA RVLRY  GT + G+ Y R                   L L+ +SDAN    L + RST  +LL
Sbjct:  604 ALAASE-SIPNSFGDAMRSPESDKWKEACRAEIRAHVRNHTWDLVYRPPGVRVIGHKWVFALKRDEHGNIIRYKARLVALGCFQTYGVDYT--STYSPVASLNTVRIFLAVCCQRGYVVKQYDVETAFLNGDLEEEVYMVPPEGINVR-----DGMVCRLRRSLYGLKQAAAVWHKTIRSVFIALGFKQCKSCPCLFVRVGQNGPVYIVLYVDDLLIGCEAEEEASSIAEALGARFRLKSLGDARFILGMELHYNTQKGEVFVGQAQYISRMIARFGQADAHPVRNPNVIGQDLRASN-EHPKLDAKK-------PYRELVGSLLYVANATRPDICVAVGILSQHLEDPREMHWRAAVRVLRYLKGTLSTGIKYCR----------------GTQLRLLAFSDANWGSDLSTRRSTSGVLL 992          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10RM4_ORYSJ)

HSP 1 Score: 228 bits (582), Expect = 2.280e-62
Identity = 138/411 (33.58%), Postives = 230/411 (55.96%), Query Frame = 1
Query:   40 EPAAPNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            E   P++YREA   P    W+ A   E+ ++ +++ +   + P   + +  +WV+  K+NTAGEI+K+K R+V KG +Q  GVDF+   + APVA ++  R V+A+AA R W++H +DV++A+LN  L+EE+Y+  P+GF++ G   ++     + ++LYGLRQ+   WN  +     E+G         V+ R RGS  +I+ +YV+ L++TG +  EL++ + ++ G F + DLG + + L + V +D++A T++  Q  Y + + +++GM   N   +P D  + +S            +G   D+ +YR IIGSL Y     R D++Y V   +R+   PT  H  A K++LRY  GT   GL+Y               A    +L++ GY+D++LAG LD  RST
Sbjct:  893 ESEEPSSYREAAGQPA---WEEAMQREMEAIEKNKTWELAMLPAGHRAIGLKWVYKLKKNTAGEIIKHKARLVAKGYVQKQGVDFE--EVFAPVARLDTVRVVLAVAADRRWQVHHLDVKSAFLNGELEEEVYVAQPEGFARSG---KEHLVLKLHKALYGLRQAPRAWNIRLDRSLRELGFDRCTQEQAVYTRGRGSDGIIVGVYVDDLIVTGENPSELKVFKEQMMGEFEMSDLGLLTYYLGIEVDQDESATTLK--QTAYAKKLLSQFGMMECNSVSIPIDPRSQLSKD---------PEGHPVDATEYRRIIGSLRYLLH-TRPDLSYAVGVASRFMERPTVMHFKAVKQILRYIKGTMDYGLVY---------------AAGTGALKITGYTDSDLAGDLDDRRST 1268          
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Match: A0A8H8NI06_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NI06_9AGAM)

HSP 1 Score: 228 bits (580), Expect = 4.220e-62
Identity = 142/407 (34.89%), Postives = 227/407 (55.77%), Query Frame = 1
Query:   52 PNNYREALQTPEAREWQAACDAEIASLSEHRVFSWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDTLSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAPDGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYSSPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLGEVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADASTAVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSLARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMAAASLELVGYSDANLAGCLDSGRST 1272
            P  ++EA++ P+A  W  A   E+ S+ +H+V++ V RP  +  +K RWVF  KR++ GEI+++K R+V KG  Q PGVD+  + +S+PVA  +  R ++++ AA    L Q+DV+TA+L+A L+EE++ME P GFS+   G   ++   + +++YGL+Q+A  +   +      IG     +   VF  R G  + II+ +V+ +LL G S   L+ ++++I     + DLGE    + + + RD +AGT+++ Q  YI D+ AR+GM        P           +  P+ D    P+ D   Y+ ++GSLMYA    R D+A+    LA+YAA P   H  A KRVLRY  GT  LG++Y+R                 + L+L+GY DA+ AG  ++ RST
Sbjct:  912 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKGFSQRPGVDY--VEISSPVAAADSLRTLLSIVAALDLELLQIDVKTAFLHAKLEEEIFMEQPPGFSE---GAMSVWK--LNKAIYGLKQAARAFYLCLKAILENIGFHRCDTDHSVFWLREGDELAIILGHVDDMLLAGTSTAFLEKIKSKIAESLEIVDLGEAKMFVGIEIERDRSAGTLKISQRRYINDILARFGMSDCKTCDTP-------MAESLYLPKLDS---PSIDRTLYQQLVGSLMYAMISTRADIAFPTGLLAQYAANPGKEHWDAGKRVLRYLKGTSNLGIVYHRS----------------SDLKLLGYVDADYAGDKNTSRST 1285          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA2.370e-7036.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8JJR7_9AGAM2.200e-6635.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GI08_9APHY6.400e-6534.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
M5BWJ0_THACB1.270e-6335.45Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
A0A498M2F0_LABRO3.840e-6333.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0L9TAH8_PHAAN5.750e-6331.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2V9YD16_9BACT9.170e-6335.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HK30_9STRA1.510e-6235.87Integrase catalytic domain-containing protein n=1 ... [more]
Q10RM4_ORYSJ2.280e-6233.58Retrotransposon protein, putative, unclassified n=... [more]
A0A8H8NI06_9AGAM4.220e-6234.89Copia-like polyprotein/retrotransposon n=2 Tax=Cer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5674contigP-wetherbeei_contig5674:891..2180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1290
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.44e-69
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size1290
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.7095373-CDS-P-wetherbeei_contig5674:890..21801683186842.7095373-CDS-P-wetherbeei_contig5674:890..2180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5674 891..2180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5674.1.1prot_P-wetherbeei_contig5674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5674 891..2180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5674.1.1

>prot_P-wetherbeei_contig5674.1.1 ID=prot_P-wetherbeei_contig5674.1.1|Name=mRNA_P-wetherbeei_contig5674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=430bp
KVQGLSLGALPSGEPAAPNNYREALQTPEAREWQAACDAEIASLSEHRVF
SWVVRPKDRKTLKSRWVFTAKRNTAGEIVKYKGRVVVKGSLQTPGVDFDT
LSLSAPVANINKFRCVIALAAARGWRLHQMDVETAYLNALLKEELYMEAP
DGFSKRGAGGRDLFGSCIARSLYGLRQSAFNWNATISEFFVEIGVVAAYS
SPCVFVRRRGSSILIIVLYVNHLLLTGNSEPELQLLRTEIGGRFRVKDLG
EVAHLLSMRVSRDDAAGTVRLDQAHYIQDMAARYGMEAANPTRLPADAST
AVSVTGIEPPRADGTDGPTPDSCDYRSIIGSLMYAACINRLDVAYQVRSL
ARYAAAPTAAHMMAAKRVLRYHIGTPTLGLLYYRQPAAATATATPVTAMA
AASLELVGYSDANLAGCLDSGRSTIKLLL*
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mRNA from alignment at P-wetherbeei_contig5674:891..2180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5674.1.1 ID=mRNA_P-wetherbeei_contig5674.1.1|Name=mRNA_P-wetherbeei_contig5674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig5674:891..2180+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTGCAAGGCCTTTCGCTGGGAGCGCTGCCGAGTGGTGAGCCTGCGGC GCCCAATAATTACCGCGAGGCGCTGCAGACGCCGGAAGCGCGGGAGTGGC AGGCGGCGTGCGACGCAGAGATTGCGTCGCTGTCGGAGCATCGCGTCTTC AGCTGGGTGGTGCGGCCGAAAGACCGCAAGACACTCAAAAGCCGCTGGGT GTTCACGGCCAAGCGCAACACGGCCGGCGAAATTGTGAAGTACAAGGGCC GGGTTGTGGTTAAGGGCTCTCTGCAGACGCCCGGCGTGGACTTCGATACG CTCTCGCTGTCGGCGCCGGTGGCCAACATCAACAAATTCCGCTGCGTCAT TGCTCTGGCGGCGGCACGCGGCTGGCGTCTTCACCAGATGGACGTCGAGA CGGCCTACCTCAACGCGCTGCTGAAGGAAGAGCTTTACATGGAGGCGCCG GACGGCTTTTCGAAGCGCGGCGCTGGCGGCCGGGATTTGTTTGGCAGCTG CATTGCTCGGTCGCTCTACGGGCTGCGGCAGTCGGCCTTCAACTGGAACG CCACCATCTCGGAGTTTTTCGTCGAGATCGGCGTTGTGGCCGCATATTCC AGCCCTTGCGTCTTCGTGCGGCGCCGTGGGAGCAGCATCCTGATCATCGT GCTGTACGTGAACCACTTGCTGCTGACGGGCAACAGCGAGCCCGAGCTGC AGCTGCTGAGGACGGAGATCGGCGGCCGCTTCCGGGTGAAGGACCTCGGC GAGGTGGCGCATCTTCTCAGCATGCGCGTCTCTCGTGATGACGCTGCCGG AACGGTGCGCCTCGACCAAGCGCACTATATCCAAGACATGGCCGCTCGCT ATGGCATGGAGGCGGCCAACCCGACACGACTGCCCGCGGACGCCAGCACA GCCGTGTCGGTCACCGGTATCGAGCCGCCGCGGGCAGATGGCACCGACGG GCCGACGCCGGACAGCTGCGATTACCGGAGCATCATTGGATCGCTGATGT ACGCGGCGTGCATCAACCGCCTCGATGTGGCATACCAGGTGCGAAGCCTG GCGCGCTATGCGGCAGCGCCGACGGCGGCGCATATGATGGCAGCGAAGCG CGTGCTGCGGTACCATATCGGGACGCCAACGCTGGGGCTGCTCTACTACC GGCAGCCAGCAGCGGCGACGGCAACAGCGACACCGGTGACGGCTATGGCG GCAGCATCACTGGAGCTGGTGGGCTACAGCGACGCAAATCTGGCAGGATG CTTGGACAGCGGCCGCTCCACGATCAAACTTCTCCTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5674:891..2180+

>mRNA_P-wetherbeei_contig5674.1.1 ID=mRNA_P-wetherbeei_contig5674.1.1|Name=mRNA_P-wetherbeei_contig5674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig5674:891..2180+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTGCAAGGCCTTTCGCTGGGAGCGCTGCCGAGTGGTGAGCCTGCGGC
GCCCAATAATTACCGCGAGGCGCTGCAGACGCCGGAAGCGCGGGAGTGGC
AGGCGGCGTGCGACGCAGAGATTGCGTCGCTGTCGGAGCATCGCGTCTTC
AGCTGGGTGGTGCGGCCGAAAGACCGCAAGACACTCAAAAGCCGCTGGGT
GTTCACGGCCAAGCGCAACACGGCCGGCGAAATTGTGAAGTACAAGGGCC
GGGTTGTGGTTAAGGGCTCTCTGCAGACGCCCGGCGTGGACTTCGATACG
CTCTCGCTGTCGGCGCCGGTGGCCAACATCAACAAATTCCGCTGCGTCAT
TGCTCTGGCGGCGGCACGCGGCTGGCGTCTTCACCAGATGGACGTCGAGA
CGGCCTACCTCAACGCGCTGCTGAAGGAAGAGCTTTACATGGAGGCGCCG
GACGGCTTTTCGAAGCGCGGCGCTGGCGGCCGGGATTTGTTTGGCAGCTG
CATTGCTCGGTCGCTCTACGGGCTGCGGCAGTCGGCCTTCAACTGGAACG
CCACCATCTCGGAGTTTTTCGTCGAGATCGGCGTTGTGGCCGCATATTCC
AGCCCTTGCGTCTTCGTGCGGCGCCGTGGGAGCAGCATCCTGATCATCGT
GCTGTACGTGAACCACTTGCTGCTGACGGGCAACAGCGAGCCCGAGCTGC
AGCTGCTGAGGACGGAGATCGGCGGCCGCTTCCGGGTGAAGGACCTCGGC
GAGGTGGCGCATCTTCTCAGCATGCGCGTCTCTCGTGATGACGCTGCCGG
AACGGTGCGCCTCGACCAAGCGCACTATATCCAAGACATGGCCGCTCGCT
ATGGCATGGAGGCGGCCAACCCGACACGACTGCCCGCGGACGCCAGCACA
GCCGTGTCGGTCACCGGTATCGAGCCGCCGCGGGCAGATGGCACCGACGG
GCCGACGCCGGACAGCTGCGATTACCGGAGCATCATTGGATCGCTGATGT
ACGCGGCGTGCATCAACCGCCTCGATGTGGCATACCAGGTGCGAAGCCTG
GCGCGCTATGCGGCAGCGCCGACGGCGGCGCATATGATGGCAGCGAAGCG
CGTGCTGCGGTACCATATCGGGACGCCAACGCTGGGGCTGCTCTACTACC
GGCAGCCAGCAGCGGCGACGGCAACAGCGACACCGGTGACGGCTATGGCG
GCAGCATCACTGGAGCTGGTGGGCTACAGCGACGCAAATCTGGCAGGATG
CTTGGACAGCGGCCGCTCCACGATCAAACTTCTCCTCTAA
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