mRNA_P-wetherbeei_contig56705.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56705.1.1
Unique NamemRNA_P-wetherbeei_contig56705.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A1Z9BI81_9BACT (DUF2470 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Z9BI81_9BACT)

HSP 1 Score: 159 bits (402), Expect = 9.620e-46
Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIVAT-GATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAAAS 447
            ARASYLE HP A++Y+D+ DF+F+QL V S+RY+GG+GRMSWV    +Q +E+DP+ P +AGII HMNEDH   M++  R  +    T  ATMTAVDRYGF++ ALT +GP  IRL F+  + S  E RK+MV LV++ RAA+S
Sbjct:  123 ARASYLESHPSASRYIDYSDFNFWQLRVESIRYIGGYGRMSWVSADEWQASESDPMRPFAAGIIKHMNEDHGDAMVDYCRVLSRATDTKSATMTAVDRYGFEMSALTGEGPRPIRLAFSGPIGSADEARKEMVALVKRCRAASS 266          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A0K1ERP3_CHOCO (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ERP3_CHOCO)

HSP 1 Score: 149 bits (377), Expect = 5.960e-42
Identity = 80/151 (52.98%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    1 PTNLQVARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAAASE 450
            P   + ARA +L   PEAA Y  F DF  ++L   S+RYVGGFGR+SWVD   Y+ A  DPIAPS+AGI+SHMNEDH   +L   +    IV AT ATM AVDR+GF++ A T +GP   RLGF   + S  +VR  MVELVR+ARA  +E
Sbjct:  118 PAEAEAARAEFLAARPEAALYAGFGDFAMYRLEPGSIRYVGGFGRVSWVDAIEYKQAAPDPIAPSAAGILSHMNEDHADAVLAYAQALAGIVDATSATMVAVDRHGFELRAATPEGPRSARLGFPREVTSMDQVRVVMVELVREARARLAE 268          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A524NGU3_9DELT (DUF2470 domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NGU3_9DELT)

HSP 1 Score: 148 bits (373), Expect = 1.790e-41
Identity = 74/142 (52.11%), Postives = 101/142 (71.13%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAA 441
            A+A+YL  HP A  Y+D+ DF F+++ V SVRY+GG+GRMSWV+L  ++D E DPIAP + GII HMN DH   M+      T+   AT ATMT+VDRYGF++ A+T +GP  IRL F+  + +  E R++MVELV++ARAA
Sbjct:  124 AKAAYLAAHPGAEYYIDYSDFAFWRIDVESVRYIGGYGRMSWVELTDWRDGEPDPIAPHARGIIDHMNADHAAAMIGYCHAFTKATDATEATMTSVDRYGFEMSAVTGRGPRPIRLTFSAPIATPEEARREMVELVKRARAA 265          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: S4XYX4_SORCE (DUF2470 domain-containing protein n=5 Tax=Sorangium cellulosum TaxID=56 RepID=S4XYX4_SORCE)

HSP 1 Score: 147 bits (371), Expect = 3.860e-41
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQAR 435
            AR ++L  HP A+ YVDF DF F++L   S+RYVGGFGRMSWVD A Y  AE DP+AP +A I+ HMN DH   +L   +    I  ATGATMT+VDRYGF++D +T  GP   RL F   + +  EVRK MV LVR+AR
Sbjct:  127 ARTTFLAAHPRASYYVDFTDFSFYRLDPVSIRYVGGFGRMSWVDAADYAAAEPDPLAPDAARILEHMNTDHADAVLAYAKALAGIKDATGATMTSVDRYGFELDVITPAGPKAARLAFDAPVSTSDEVRKAMVALVREAR 266          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A2E5XQH5_9EURY (DUF2470 domain-containing protein n=3 Tax=Archaea TaxID=2157 RepID=A0A2E5XQH5_9EURY)

HSP 1 Score: 146 bits (369), Expect = 8.760e-41
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 RASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIVATG-ATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQAR 435
            R ++LERHP A+ YVDF+DF F++L VS  RY+GGFGRMSWVD + ++ AE DP+  S+  IISHMNEDHE  M+ + +  ++   T  ATMT +DRYGF++ A+T +GP  IR+GF +      E RK++V LVR+AR
Sbjct:  134 REAFLERHPNASFYVDFEDFSFYRLRVSEARYIGGFGRMSWVDGSDWEAAEPDPLFESAEDIISHMNEDHEDAMVIICKEMSKAKDTASATMTGIDRYGFEMSAMTAEGPRPIRIGFENEATDSEEARKEIVSLVRRAR 272          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A150R3G5_SORCE (DUF2470 domain-containing protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150R3G5_SORCE)

HSP 1 Score: 145 bits (367), Expect = 1.540e-40
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAAAS 447
            AR  +L  HP A+ YVDF DF F++L   S+RYVGGFGRMSWVD A Y  AE DP+AP +A I+ HMN DH   +L   +    I  ATGA MT+VDRYGF++D +T  GP   RLGF   + +  EVRK MV LVR+AR  ++
Sbjct:  127 ARTRFLAAHPRASYYVDFTDFSFYRLDPLSIRYVGGFGRMSWVDAADYAAAEPDPLAPDAARILEHMNTDHADAILAYAKALAGIRDATGAKMTSVDRYGFELDVITPAGPKAARLGFDAPVSTTDEVRKAMVALVREARGRSA 270          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A9EWW3_SORC5 (DUF2470 domain-containing protein n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9EWW3_SORC5)

HSP 1 Score: 145 bits (365), Expect = 3.230e-40
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQAR 435
            AR S+L  HP A+ YVDF DF F++L   S+RYVGGFGRMSWV+  AY  AE DP+A  +AGI+ HMN DH   +L   +    I  ATGATMT+VDRYGF++D +T  GP   RL F   + +  EVRK MV LVR+AR
Sbjct:  129 ARTSFLAAHPRASYYVDFTDFSFYRLDPVSIRYVGGFGRMSWVEADAYAAAEPDPLAADAAGILEHMNTDHADAVLAYAKVLAGIKDATGATMTSVDRYGFELDVITPAGPKATRLPFDAQVSTTDEVRKAMVALVREAR 268          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A2E7GYQ1_9EURY (DUF2470 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7GYQ1_9EURY)

HSP 1 Score: 145 bits (365), Expect = 3.760e-40
Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIV-ATGATMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQAR 435
            AR  +LE+H  A+ YVDFKDFHF++L VSSVRY+GGFGRMSWVD  ++ +AE+DP++P S  II HMNEDH   M+   ++ ++   A+ A MT +DRYGF++ A+T  GP  IRL F +   +  E R ++V LV+ AR
Sbjct:  134 ARIEFLEKHESASFYVDFKDFHFYRLQVSSVRYIGGFGRMSWVDEQSWFEAESDPLSPFSNDIIEHMNEDHRDAMMICCQNLSKAKDASDAVMTGIDRYGFEMSAITSDGPRPIRLAFRNEATNSEEARSEIVSLVKDAR 273          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A2D5QCM1_9EURY (DUF2470 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D5QCM1_9EURY)

HSP 1 Score: 144 bits (364), Expect = 4.680e-40
Identity = 69/136 (50.74%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   31 YLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIVATGA-TMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQAR 435
            ++ RHP++  Y DF DFH+F+L VSSVRY+GGFGRMSWV    + DAE DP+ P S  II+HMNEDHE  M+ + +  ++ V T A TMT +DRYGF++ A+TE GP  IR+ F++ +      RK++V+LV+ AR
Sbjct:  135 FVSRHPDSRFYADFGDFHYFRLEVSSVRYIGGFGRMSWVQGKDWTDAEPDPLLPFSGDIINHMNEDHEDAMIIICQKMSKAVDTSAVTMTGIDRYGFEMSAMTEDGPRPIRIAFSNEVMDSDGARKEIVKLVKSAR 270          
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Match: A0A3S5J399_9PROT (DUF2470 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A3S5J399_9PROT)

HSP 1 Score: 143 bits (361), Expect = 1.250e-39
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 1
Query:   19 ARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVDLAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIVATGA-TMTAVDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAAASE 450
            A+A+YL+ HP AA Y+D+ DF F+QL V S+RY+GG+GRMSWV    +  +EAD +A  + GII HMNEDH++ M+E  +  ++   T A TMT VDRYGF++ A T  GP  IRL F   + +  E RK+MV LVR+AR   ++
Sbjct:  124 AKAAYLKTHPSAAHYIDYSDFSFWQLEVDSLRYIGGYGRMSWVQGEEWASSEADVVAEFAEGIIQHMNEDHQNAMVEYCQAFSKATDTSAATMTGVDRYGFEMSAETAAGPRPIRLAFASPISTSEEARKEMVRLVREARQTLTQ 268          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56705.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9BI81_9BACT9.620e-4654.86DUF2470 domain-containing protein n=2 Tax=Bacteria... [more]
A0A0K1ERP3_CHOCO5.960e-4252.98Pyridoxamine 5'-phosphate oxidase n=1 Tax=Chondrom... [more]
A0A524NGU3_9DELT1.790e-4152.11DUF2470 domain-containing protein n=1 Tax=Myxococc... [more]
S4XYX4_SORCE3.860e-4154.29DUF2470 domain-containing protein n=5 Tax=Sorangiu... [more]
A0A2E5XQH5_9EURY8.760e-4151.80DUF2470 domain-containing protein n=3 Tax=Archaea ... [more]
A0A150R3G5_SORCE1.540e-4052.78DUF2470 domain-containing protein n=1 Tax=Sorangiu... [more]
A9EWW3_SORC53.230e-4054.29DUF2470 domain-containing protein n=1 Tax=Sorangiu... [more]
A0A2E7GYQ1_9EURY3.760e-4050.71DUF2470 domain-containing protein n=1 Tax=Euryarch... [more]
A0A2D5QCM1_9EURY4.680e-4050.74DUF2470 domain-containing protein n=1 Tax=Euryarch... [more]
A0A3S5J399_9PROT1.250e-3948.97DUF2470 domain-containing protein n=2 Tax=Bacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56705contigP-wetherbeei_contig56705:61..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1254432.SCE1572_25325
PFAMsDUF2470,Pyrid_oxidase_2
Model size453
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K07226
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.32e-42
EggNOG OGsCOG0748@1|root,COG0748@2|Bacteria,1RFVC@1224|Proteobacteria,42UK2@68525|delta/epsilon subdivisions,2WR4V@28221|Deltaproteobacteria,2Z1V6@29|Myxococcales
DescriptionPyridoxamine 5'-phosphate oxidase
Cds size453
COG categoryP
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.4655614-CDS-P-wetherbeei_contig56705:60..5131683186842.4655614-CDS-P-wetherbeei_contig56705:60..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56705 61..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56705.1.1prot_P-wetherbeei_contig56705.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56705 61..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56705.1.1

>prot_P-wetherbeei_contig56705.1.1 ID=prot_P-wetherbeei_contig56705.1.1|Name=mRNA_P-wetherbeei_contig56705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
PTNLQVARASYLERHPEAAQYVDFKDFHFFQLSVSSVRYVGGFGRMSWVD
LAAYQDAEADPIAPSSAGIISHMNEDHEHNMLEMIRHKTEIVATGATMTA
VDRYGFDIDALTEQGPAQIRLGFTHTLQSGGEVRKDMVELVRQARAAASE
*
back to top

mRNA from alignment at P-wetherbeei_contig56705:61..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56705.1.1 ID=mRNA_P-wetherbeei_contig56705.1.1|Name=mRNA_P-wetherbeei_contig56705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig56705:61..513- (Phaeothamnion wetherbeei SAG_119_79)
CCGACGAATCTCCAAGTAGCTCGAGCCAGTTATCTCGAGCGCCACCCCGA GGCGGCTCAATACGTGGATTTCAAGGACTTTCATTTCTTTCAGCTCAGCG TATCCAGCGTGCGATACGTGGGCGGGTTCGGACGTATGTCGTGGGTCGAC CTGGCAGCTTACCAAGATGCCGAGGCCGATCCTATCGCCCCCAGCTCAGC TGGCATCATCTCCCACATGAACGAGGATCACGAGCACAATATGCTGGAGA TGATCCGGCATAAAACCGAGATCGTGGCAACTGGCGCCACGATGACAGCG GTCGACCGCTATGGATTTGATATCGACGCCCTGACCGAGCAAGGTCCGGC TCAGATCCGCCTCGGATTCACTCACACCTTGCAGAGTGGCGGCGAAGTCC GCAAAGACATGGTGGAGCTCGTGCGCCAGGCCCGCGCCGCAGCTTCAGAA TAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56705:61..513-

>mRNA_P-wetherbeei_contig56705.1.1 ID=mRNA_P-wetherbeei_contig56705.1.1|Name=mRNA_P-wetherbeei_contig56705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig56705:61..513- (Phaeothamnion wetherbeei SAG_119_79)
CCGACGAATCTCCAAGTAGCTCGAGCCAGTTATCTCGAGCGCCACCCCGA
GGCGGCTCAATACGTGGATTTCAAGGACTTTCATTTCTTTCAGCTCAGCG
TATCCAGCGTGCGATACGTGGGCGGGTTCGGACGTATGTCGTGGGTCGAC
CTGGCAGCTTACCAAGATGCCGAGGCCGATCCTATCGCCCCCAGCTCAGC
TGGCATCATCTCCCACATGAACGAGGATCACGAGCACAATATGCTGGAGA
TGATCCGGCATAAAACCGAGATCGTGGCAACTGGCGCCACGATGACAGCG
GTCGACCGCTATGGATTTGATATCGACGCCCTGACCGAGCAAGGTCCGGC
TCAGATCCGCCTCGGATTCACTCACACCTTGCAGAGTGGCGGCGAAGTCC
GCAAAGACATGGTGGAGCTCGTGCGCCAGGCCCGCGCCGCAGCTTCAGAA
TAA
back to top