mRNA_P-wetherbeei_contig56696.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig56696.1.1
Unique Name	mRNA_P-wetherbeei_contig56696.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A2P2CES1_9ZZZZ (DNA helicase n=1 Tax=metagenome TaxID=256318 RepID=A0A2P2CES1_9ZZZZ)

HSP 1 Score: 305 bits (781), Expect = 1.380e-94
Identity = 152/171 (88.89%), Postives = 165/171 (96.49%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GLR LG EHDLPELV+AGLF+EQYLT+LD+LGATDY+DLIRRAVIEAEAHRDELRAR+ HVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTT+G PAPVVVL+RTRRFGPR+LLAAGRVA RL+L+GSI+AGAREAFL+PE
Sbjct:  176 LDPAGLRGLGIEHDLPELVAAGLFLEQYLTVLDSLGATDYADLIRRAVIEAEAHRDELRARYHHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTAGAPAPVVVLRRTRRFGPRILLAAGRVASRLSLTGSIEAGAREAFLAPE 346

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A4Q2SBT7_9ACTN (DNA helicase n=7 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2SBT7_9ACTN)

HSP 1 Score: 304 bits (779), Expect = 2.380e-94
Identity = 152/171 (88.89%), Postives = 162/171 (94.74%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GLR+LG EHDLPELV+AGLF+EQYLT+LDNLGATDYSDLIRRAVIEAE HRDELRARW+HVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTT+G  APVVVLQRTRRFGPR+LLAAGRVA RL+L+GSI   AREAFL+PE
Sbjct:  167 LDPAGLRALGIEHDLPELVAAGLFLEQYLTVLDNLGATDYSDLIRRAVIEAETHRDELRARWSHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTAGSSAPVVVLQRTRRFGPRILLAAGRVASRLSLTGSIAPDAREAFLAPE 337

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A0Q6UMD8_9ACTN (DNA helicase n=1 Tax=Nocardioides sp. Root122 TaxID=1736431 RepID=A0A0Q6UMD8_9ACTN)

HSP 1 Score: 303 bits (776), Expect = 7.230e-94
Identity = 151/171 (88.30%), Postives = 163/171 (95.32%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GLR LG EHDLPELV+AGLF+EQYLT+LD+LGATDY+DLIRRAVIEAEAHRDELRAR+ HVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFP  +G PAPVVVL+RTRRFGPR+LLAAGRVA RLTL+GSI+AGAREAFL+PE
Sbjct:  176 LDPAGLRGLGIEHDLPELVAAGLFLEQYLTVLDSLGATDYADLIRRAVIEAEAHRDELRARYDHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPAATGAPAPVVVLRRTRRFGPRILLAAGRVASRLTLTGSIEAGAREAFLAPE 346

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A4Z1CPD8_9ACTN (DNA helicase n=9 Tax=Nocardioides TaxID=1839 RepID=A0A4Z1CPD8_9ACTN)

HSP 1 Score: 301 bits (772), Expect = 2.420e-93
Identity = 150/171 (87.72%), Postives = 161/171 (94.15%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GLR+LG EHDLPELV+AGLF+EQYLT+LDNLGATDYSDLIRRAVIEAE HRDELRARW+HVFVDEYQDTDPGQVALLRALAGDGR+LTVVGDPHQSIYGFRGADVRGILDFPASFPT +G PAPVVVLQRTRRFGPR+LL AGRVA RL+L+GSI   AREAFL+PE
Sbjct:  167 LDPAGLRALGIEHDLPELVAAGLFLEQYLTVLDNLGATDYSDLIRRAVIEAETHRDELRARWSHVFVDEYQDTDPGQVALLRALAGDGRDLTVVGDPHQSIYGFRGADVRGILDFPASFPTAAGSPAPVVVLQRTRRFGPRILLGAGRVASRLSLTGSIAPEAREAFLAPE 337

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A4Q2RV64_9ACTN (DNA helicase n=16 Tax=root TaxID=1 RepID=A0A4Q2RV64_9ACTN)

HSP 1 Score: 298 bits (762), Expect = 7.130e-92
Identity = 148/171 (86.55%), Postives = 162/171 (94.74%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GLR+LG EHDLPE+++AGLF+EQYLT+LDNLGATDYSDLIRRAVIEAEAHR ELRAR+ HVFVDEYQDTDPGQVALLRALAGDGR+LTVVGDPHQSIYGFRGADVRGILDFPA+FPT+SG PAPVVVL+RTRRFGPR+LL AGRVA RLTL+GSI + AREAFLSPE
Sbjct:  173 LDPAGLRALGIEHDLPEMIAAGLFLEQYLTVLDNLGATDYSDLIRRAVIEAEAHRGELRARYAHVFVDEYQDTDPGQVALLRALAGDGRDLTVVGDPHQSIYGFRGADVRGILDFPAAFPTSSGAPAPVVVLRRTRRFGPRILLGAGRVASRLTLTGSIGSEAREAFLSPE 343

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: UPI001FEAEC54 (ATP-dependent helicase n=1 Tax=Nocardioides piscis TaxID=2714938 RepID=UPI001FEAEC54)

HSP 1 Score: 277 bits (709), Expect = 5.960e-88
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GL +LG  + LPELV+AG F+EQYLTILDNLGATDY DLIRRAVI AEAHR ELRAR++HVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFP  FPT+ G+ APV+VL+RTRRFGPRLLL AGR+A RL LSGSI A AREAFLSP+
Sbjct:  181 LDPTGLEALGAANGLPELVAAGRFLEQYLTILDNLGATDYPDLIRRAVITAEAHRHELRARFSHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPGQFPTSGGDRAPVLVLRRTRRFGPRLLLCAGRIAGRLPLSGSIGADAREAFLSPQ 351

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: UPI00055EF48C (UvrD-helicase domain-containing protein n=1 Tax=Nocardioides sp. CF8 TaxID=110319 RepID=UPI00055EF48C)

HSP 1 Score: 277 bits (709), Expect = 1.700e-86
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GL +LG  + LPE V+AG F+EQYLTILDNLGATDY DLIRRAVI AEAHRDELRAR++HVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFP  FPT +GE APV+VL+RTRRFGPRLLLAAGR+A RL L+GSI   AREAFL+PE
Sbjct:  181 LDPDGLAALGAANGLPEFVAAGHFLEQYLTILDNLGATDYPDLIRRAVITAEAHRDELRARFSHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPGQFPTAAGERAPVLVLRRTRRFGPRLLLAAGRIAARLPLTGSIGPEAREAFLTPE 351

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: UPI00163D94F3 (ATP-dependent helicase n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI00163D94F3)

HSP 1 Score: 275 bits (704), Expect = 1.420e-83
Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LD   LR+LGEEH LPELV++GLF++QYLTILDNLGATD++DLIRRAVIE EAHRDELRAR++HVFVDEYQDTDPGQVALLRALAGDGR+L  VGDPHQSIYGFRGADVRGILDFPA FPT +GE APVVVL+RTRRFGPRLL A+ RVA RL L+GSIDA ARE FL PE
Sbjct:  179 LDGPALRALGEEHRLPELVASGLFLDQYLTILDNLGATDHADLIRRAVIEVEAHRDELRARFSHVFVDEYQDTDPGQVALLRALAGDGRDLVAVGDPHQSIYGFRGADVRGILDFPAQFPTRTGERAPVVVLRRTRRFGPRLLRASRRVAERLPLAGSIDARAREEFLHPE 349

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: A0A2R7Z078_9ACTN (DNA helicase n=1 Tax=Nocardioides currus TaxID=2133958 RepID=A0A2R7Z078_9ACTN)

HSP 1 Score: 275 bits (702), Expect = 2.760e-83
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LDP GL +LG  H LPE V+AG F+EQYLTILDNLGATD+ DLIRRAVI AEAHRDELRAR++HVFVDEYQDTDPGQV+LLRALAGDGRNLTVVGDPHQSIYGFRGADV GILDFP  FPTT+GE APV VL+RTRRFGPRLL+AAGR+A RL L+GSI A AR+AFL+PE
Sbjct:  181 LDPTGLEALGRTHGLPEFVAAGQFLEQYLTILDNLGATDHPDLIRRAVIIAEAHRDELRARFSHVFVDEYQDTDPGQVSLLRALAGDGRNLTVVGDPHQSIYGFRGADVHGILDFPDQFPTTAGERAPVQVLRRTRRFGPRLLVAAGRIAGRLPLTGSIGAEARDAFLTPE 351

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BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Match: UPI000D750701 (ATP-dependent helicase n=1 Tax=Nocardioides solisilvae TaxID=1542435 RepID=UPI000D750701)

HSP 1 Score: 273 bits (698), Expect = 1.010e-82
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 1

Query:    1 LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIEAEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQSIYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVAHRLTLSGSIDAGAREAFLSPE 513
            LD   LR+LG EH  PELV+AGLF++QYLTILDNLGATD++DL+RRAV+EAEAHRDELRAR++HVFVDEYQDTDPGQVALLRALAGDGR+LTVVGDPHQSIYGFRGA+VRGILDFPA FPT  G  APVVVL+ TRRFGPRLL AAGRVA RL L+GSIDA ARE FL PE
Sbjct:  179 LDGPALRALGLEHGAPELVAAGLFLDQYLTILDNLGATDHADLVRRAVLEAEAHRDELRARFSHVFVDEYQDTDPGQVALLRALAGDGRDLTVVGDPHQSIYGFRGAEVRGILDFPAQFPTREGARAPVVVLRTTRRFGPRLLTAAGRVAARLPLAGSIDARAREEFLHPE 349

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig56696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2P2CES1_9ZZZZ	1.380e-94	88.89	DNA helicase n=1 Tax=metagenome TaxID=256318 RepID...	[more]
A0A4Q2SBT7_9ACTN	2.380e-94	88.89	DNA helicase n=7 Tax=Nocardioides TaxID=1839 RepID...	[more]
A0A0Q6UMD8_9ACTN	7.230e-94	88.30	DNA helicase n=1 Tax=Nocardioides sp. Root122 TaxI...	[more]
A0A4Z1CPD8_9ACTN	2.420e-93	87.72	DNA helicase n=9 Tax=Nocardioides TaxID=1839 RepID...	[more]
A0A4Q2RV64_9ACTN	7.130e-92	86.55	DNA helicase n=16 Tax=root TaxID=1 RepID=A0A4Q2RV6...	[more]
UPI001FEAEC54	5.960e-88	82.46	ATP-dependent helicase n=1 Tax=Nocardioides piscis...	[more]
UPI00055EF48C	1.700e-86	82.46	UvrD-helicase domain-containing protein n=1 Tax=No...	[more]
UPI00163D94F3	1.420e-83	81.87	ATP-dependent helicase n=2 Tax=unclassified Nocard...	[more]
A0A2R7Z078_9ACTN	2.760e-83	81.29	DNA helicase n=1 Tax=Nocardioides currus TaxID=213...	[more]
UPI000D750701	1.010e-82	81.29	ATP-dependent helicase n=1 Tax=Nocardioides solisi...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig56696	contig	P-wetherbeei_contig56696:2..514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	196162.Noca_1508
Preferred name	uvrD3
PFAMs	PDDEXK_1,UvrD-helicase,UvrD_C
Model size	513
Max annot lvl	201174\|Actinobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.68e-72
EggNOG OGs	COG0210@1\|root,COG2887@1\|root,COG0210@2\|Bacteria,COG2887@2\|Bacteria,2GJD0@201174\|Actinobacteria,4DPY8@85009\|Propionibacteriales
Description	Belongs to the helicase family. UvrD subfamily
Cds size	513
COG category	L

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186842.1316984-CDS-P-wetherbeei_contig56696:1..514	1683186842.1316984-CDS-P-wetherbeei_contig56696:1..514	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig56696 2..514 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig56696.1.1	prot_P-wetherbeei_contig56696.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig56696 2..514 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig56696:2..514-
coding sequence from alignment at P-wetherbeei_contig56696:2..514-

protein sequence of mRNA_P-wetherbeei_contig56696.1.1

>prot_P-wetherbeei_contig56696.1.1 ID=prot_P-wetherbeei_contig56696.1.1|Name=mRNA_P-wetherbeei_contig56696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
LDPGGLRSLGEEHDLPELVSAGLFMEQYLTILDNLGATDYSDLIRRAVIE
AEAHRDELRARWTHVFVDEYQDTDPGQVALLRALAGDGRNLTVVGDPHQS
IYGFRGADVRGILDFPASFPTTSGEPAPVVVLQRTRRFGPRLLLAAGRVA
HRLTLSGSIDAGAREAFLSPE

mRNA from alignment at P-wetherbeei_contig56696:2..514-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig56696.1.1 ID=mRNA_P-wetherbeei_contig56696.1.1|Name=mRNA_P-wetherbeei_contig56696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56696:2..514- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACCCCGGCGGCCTCCGCAGCCTCGGCGAGGAGCACGACCTCCCCGA
GCTGGTGTCGGCCGGGCTGTTCATGGAGCAGTACCTCACGATCCTGGACA
ACCTCGGCGCCACCGACTACTCCGACCTCATCCGCCGTGCCGTGATCGAG
GCCGAGGCCCACCGTGACGAGCTGCGGGCGCGCTGGACGCACGTGTTCGT
CGATGAGTACCAGGACACCGACCCCGGTCAGGTGGCCCTGCTGCGCGCGC
TGGCCGGCGACGGTCGCAACCTCACCGTGGTCGGCGACCCGCACCAGTCC
ATCTACGGCTTCCGCGGCGCCGACGTGCGCGGCATCCTCGACTTCCCGGC
CAGCTTCCCGACCACGAGCGGCGAGCCCGCGCCCGTCGTGGTGCTGCAAC
GCACTCGGCGGTTCGGGCCGCGCCTGCTGCTGGCGGCCGGCCGCGTCGCG
CACCGCCTGACCCTCAGCGGCAGCATCGACGCCGGCGCGCGCGAGGCCTT
CCTCTCCCCGGAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig56696:2..514-

>mRNA_P-wetherbeei_contig56696.1.1 ID=mRNA_P-wetherbeei_contig56696.1.1|Name=mRNA_P-wetherbeei_contig56696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56696:2..514- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACCCCGGCGGCCTCCGCAGCCTCGGCGAGGAGCACGACCTCCCCGA
GCTGGTGTCGGCCGGGCTGTTCATGGAGCAGTACCTCACGATCCTGGACA
ACCTCGGCGCCACCGACTACTCCGACCTCATCCGCCGTGCCGTGATCGAG
GCCGAGGCCCACCGTGACGAGCTGCGGGCGCGCTGGACGCACGTGTTCGT
CGATGAGTACCAGGACACCGACCCCGGTCAGGTGGCCCTGCTGCGCGCGC
TGGCCGGCGACGGTCGCAACCTCACCGTGGTCGGCGACCCGCACCAGTCC
ATCTACGGCTTCCGCGGCGCCGACGTGCGCGGCATCCTCGACTTCCCGGC
CAGCTTCCCGACCACGAGCGGCGAGCCCGCGCCCGTCGTGGTGCTGCAAC
GCACTCGGCGGTTCGGGCCGCGCCTGCTGCTGGCGGCCGGCCGCGTCGCG
CACCGCCTGACCCTCAGCGGCAGCATCGACGCCGGCGCGCGCGAGGCCTT
CCTCTCCCCGGAG