mRNA_P-wetherbeei_contig5669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5669.1.1
Unique NamemRNA_P-wetherbeei_contig5669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5669contigP-wetherbeei_contig5669:2..1755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1741
Hectar predicted targeting categoryother localisation
Exons2
Cds size897
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.9837735-UTR-P-wetherbeei_contig5669:1..31683186841.9837735-UTR-P-wetherbeei_contig5669:1..3Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5669 2..3 +
1683186842.0150707-UTR-P-wetherbeei_contig5669:913..17551683186842.0150707-UTR-P-wetherbeei_contig5669:913..1755Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5669 914..1755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.995001-CDS-P-wetherbeei_contig5669:3..8631683186841.995001-CDS-P-wetherbeei_contig5669:3..863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5669 4..863 +
1683186842.0050788-CDS-P-wetherbeei_contig5669:876..9131683186842.0050788-CDS-P-wetherbeei_contig5669:876..913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5669 877..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5669.1.1prot_P-wetherbeei_contig5669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5669 4..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5669.1.1

>prot_P-wetherbeei_contig5669.1.1 ID=prot_P-wetherbeei_contig5669.1.1|Name=mRNA_P-wetherbeei_contig5669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
MKQVYAGGPWSEGGPIVDPLSLTAGCYRIVAGSQTNIGDGTPLFNLTLNG
GDEPIVLYPDDREDFTVGGEGVFCDQNSDFADCLANRDTAKPAMTCRNYI
TVLRGECGYAQNDAAYGYILSQCDGTPIFPISVALVFQPAMNQSAAAAFE
MQLQTALGTLLDVYPDAFMNISVTHRDGFDVVQLNLEAYLPDEYNAVMAL
LTTDSSLAAVVNGVDALKGTTLEAASGVDGADQPIPSDVQAVIDELAAGK
DQDGSDKDGADDDDGSSLVCSDGAVPAADGTCADGSTRTAAAVAATAV*
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mRNA from alignment at P-wetherbeei_contig5669:2..1755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5669.1.1 ID=mRNA_P-wetherbeei_contig5669.1.1|Name=mRNA_P-wetherbeei_contig5669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1754bp|location=Sequence derived from alignment at P-wetherbeei_contig5669:2..1755+ (Phaeothamnion wetherbeei SAG_119_79)
TCATGAAGCAGGTCTACGCCGGCGGCCCCTGGAGCGAGGGCGGGCCCATC
GTGGACCCCCTTTCGCTGACCGCCGGGTGCTACCGAATTGTCGCCGGCTC
CCAGACCAACATCGGCGACGGCACGCCGCTCTTCAACCTGACCCTGAACG
GCGGCGACGAACCCATCGTCCTCTACCCGGACGATCGCGAGGACTTCACC
GTCGGCGGGGAGGGCGTCTTTTGCGACCAGAACAGCGACTTCGCAGACTG
CCTTGCCAACCGCGACACGGCGAAGCCCGCGATGACGTGCCGCAACTACA
TCACCGTGCTCCGCGGCGAGTGCGGCTACGCGCAGAACGACGCCGCCTAC
GGCTACATCCTCAGCCAGTGCGACGGCACGCCGATCTTCCCAATCTCCGT
CGCCCTCGTCTTCCAGCCGGCCATGAACCAGTCCGCGGCCGCCGCCTTCG
AGATGCAGCTGCAGACGGCGCTCGGAACGCTGCTGGACGTCTACCCAGAT
GCCTTCATGAACATTTCTGTGACGCATCGTGACGGTTTCGACGTGGTGCA
GCTCAATCTGGAGGCGTACCTCCCCGACGAATACAACGCCGTCATGGCGC
TGCTGACGACGGACAGTTCGCTGGCGGCGGTGGTGAACGGCGTCGACGCG
CTGAAAGGAACGACGCTGGAGGCCGCGTCGGGCGTCGACGGCGCGGACCA
GCCGATCCCGTCGGATGTGCAGGCGGTAATTGACGAGCTGGCGGCCGGAA
AGGACCAGGACGGGTCCGACAAAGACGGCGCGGACGACGACGACGGTTCA
TCGCTGGTCTGCAGTGACGGCGCGGTGCCCGCAGCTGACGGCACGTGCGC
CGATGGCAGCACGCCGACGGTTGAGGCGGACGGCAGCAGCAGTGGCGGCG
ACGGCAGTCTGAGCGGCGGCGCCAAGGCCGGCATCGCCATCGCCTGCATC
TTCGCCGCCTGCGCCGTCGCTGCGGCCGCCGGCGTGGCAGTGAGGCGGCG
GAAGGCCGCGGCGGCGACCCGAGCCGCCAACAAGGTGGAGGCGCCCATGC
CGCTCGCGTAAGGCGTCGGTCCATCATGCGTTGGAGCGCTTGCGTTGTCG
TCACCAGCCAATATCTGTAACAGCGGCAGTGGCGGCGGCGGATTCTGCGG
TGAACTAATCAGGCATCCCGACTCAGGTTTTCTTCTCTTCAGGTACGCCA
CGTTGGCGGATTGAGCGCGGCCGGGGAACGCAAGCGCCGCCCCCGGGCGC
AACGGCCGCCGCCGCCCACCGCGTTTCTCGAAGCGTTGGACGGACGGCGC
TGCCGCCGCTGCACCCGCCGTCGCCACCGCCTCTCCCAGATGAAGCGTCG
GTGGCACCGCTGCAGTGGTGGCGGCGAGCGTGGTGCACGGCTTTGAGTCG
TTCGGTCCGCGTTCTGTTTTCATGTCATTTTTTGCACATCCCCTTTGGGA
GTTGTCTGTTACGTCACACACAACCACACACAAGCACTACTATCTATTGT
TGAAAGGAGCTATGCCGATCGGAAAACGGATGGCAGGCGAGCGCTAGCCA
CGGCGCCGTGGCTGCCGCCACCGCACCAGTTGGATACTTGCGGCGGCAGG
AGCGTTGGAGGCTGCCGGCGGCGGCGGCGCAGGCCCGCATCATGGCGCGC
AGGTGGCGGTAGGAAGAGGATGAAGAAAATTGGAATACTCGAACAGTTGA
TGAGAATCATTGCCAGTTCTAATCAGGAAGTTAAAATAAACTTTTGGGAA
GCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5669:2..1755+

>mRNA_P-wetherbeei_contig5669.1.1 ID=mRNA_P-wetherbeei_contig5669.1.1|Name=mRNA_P-wetherbeei_contig5669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig5669:2..1755+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCAGGTCTACGCCGGCGGCCCCTGGAGCGAGGGCGGGCCCATCGT
GGACCCCCTTTCGCTGACCGCCGGGTGCTACCGAATTGTCGCCGGCTCCC
AGACCAACATCGGCGACGGCACGCCGCTCTTCAACCTGACCCTGAACGGC
GGCGACGAACCCATCGTCCTCTACCCGGACGATCGCGAGGACTTCACCGT
CGGCGGGGAGGGCGTCTTTTGCGACCAGAACAGCGACTTCGCAGACTGCC
TTGCCAACCGCGACACGGCGAAGCCCGCGATGACGTGCCGCAACTACATC
ACCGTGCTCCGCGGCGAGTGCGGCTACGCGCAGAACGACGCCGCCTACGG
CTACATCCTCAGCCAGTGCGACGGCACGCCGATCTTCCCAATCTCCGTCG
CCCTCGTCTTCCAGCCGGCCATGAACCAGTCCGCGGCCGCCGCCTTCGAG
ATGCAGCTGCAGACGGCGCTCGGAACGCTGCTGGACGTCTACCCAGATGC
CTTCATGAACATTTCTGTGACGCATCGTGACGGTTTCGACGTGGTGCAGC
TCAATCTGGAGGCGTACCTCCCCGACGAATACAACGCCGTCATGGCGCTG
CTGACGACGGACAGTTCGCTGGCGGCGGTGGTGAACGGCGTCGACGCGCT
GAAAGGAACGACGCTGGAGGCCGCGTCGGGCGTCGACGGCGCGGACCAGC
CGATCCCGTCGGATGTGCAGGCGGTAATTGACGAGCTGGCGGCCGGAAAG
GACCAGGACGGGTCCGACAAAGACGGCGCGGACGACGACGACGGTTCATC
GCTGGTCTGCAGTGACGGCGCGGTGCCCGCAGCTGACGGCACGTGCGCCG
ATGGCAGCACGCGGACGGCAGCAGCAGTGGCGGCGACGGCAGTCTGA
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