mRNA_P-wetherbeei_contig56680.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56680.1.1
Unique NamemRNA_P-wetherbeei_contig56680.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56680.1.1 vs. uniprot
Match: A0A6P1J4U9_9BURK (Tetratricopeptide repeat protein n=1 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1J4U9_9BURK)

HSP 1 Score: 73.6 bits (179), Expect = 1.350e-13
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   67 RHAQAWVERGSALKRLNRTAEAVGSFEKALALEPGLVSAHTSLAATALSD 216
            RHA AWVERG ALK L+RTA+AVGS+EKALAL P L+SAHT LAAT LSD
Sbjct:  210 RHAPAWVERGGALKMLDRTADAVGSYEKALALAPELLSAHTGLAATVLSD 259
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BLAST of mRNA_P-wetherbeei_contig56680.1.1 vs. uniprot
Match: A0A8J5XHK7_DIALT (CS domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHK7_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-7
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    7 ELGRYEDALARAERAVHAHPRHAQAWVERGSALKRLNRTAEAVGSFEKALALEPG 171
            +LGRYE ALA A+ A+   P HA+A   RG AL+ L+R AEA+G+F +A+ LEPG
Sbjct:  507 KLGRYEQALADADGALALAPTHAKAAFRRGLALQALDRYAEAIGAFSRAVELEPG 561
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56680.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P1J4U9_9BURK1.350e-1378.00Tetratricopeptide repeat protein n=1 Tax=Hydrogeno... [more]
A0A8J5XHK7_DIALT2.350e-754.55CS domain-containing protein n=1 Tax=Diacronema lu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56680contigP-wetherbeei_contig56680:291..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1090318.ATTI01000001_gene1619
PFAMsSulfotransfer_3,TPR_16
Model size216
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.18e-06
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,2TSGE@28211|Alphaproteobacteria,2K26Q@204457|Sphingomonadales
DescriptionSulfotransferase family
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.8999326-CDS-P-wetherbeei_contig56680:290..5061683186841.8999326-CDS-P-wetherbeei_contig56680:290..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56680 291..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56680.1.1prot_P-wetherbeei_contig56680.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56680 291..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56680.1.1

>prot_P-wetherbeei_contig56680.1.1 ID=prot_P-wetherbeei_contig56680.1.1|Name=mRNA_P-wetherbeei_contig56680.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
LNELGRYEDALARAERAVHAHPRHAQAWVERGSALKRLNRTAEAVGSFEK
ALALEPGLVSAHTSLAATALSD
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mRNA from alignment at P-wetherbeei_contig56680:291..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56680.1.1 ID=mRNA_P-wetherbeei_contig56680.1.1|Name=mRNA_P-wetherbeei_contig56680.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig56680:291..506- (Phaeothamnion wetherbeei SAG_119_79)
TTGAACGAACTTGGACGCTACGAGGATGCTCTGGCGCGTGCCGAGCGCGC
GGTCCATGCCCATCCCCGACACGCCCAGGCCTGGGTGGAACGGGGCAGTG
CACTCAAGCGGCTGAACCGCACGGCTGAAGCCGTGGGCAGCTTCGAAAAG
GCCCTGGCGCTCGAGCCCGGCCTGGTGTCGGCGCACACCAGCCTCGCGGC
CACCGCGCTCAGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56680:291..506-

>mRNA_P-wetherbeei_contig56680.1.1 ID=mRNA_P-wetherbeei_contig56680.1.1|Name=mRNA_P-wetherbeei_contig56680.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig56680:291..506- (Phaeothamnion wetherbeei SAG_119_79)
TTGAACGAACTTGGACGCTACGAGGATGCTCTGGCGCGTGCCGAGCGCGC
GGTCCATGCCCATCCCCGACACGCCCAGGCCTGGGTGGAACGGGGCAGTG
CACTCAAGCGGCTGAACCGCACGGCTGAAGCCGTGGGCAGCTTCGAAAAG
GCCCTGGCGCTCGAGCCCGGCCTGGTGTCGGCGCACACCAGCCTCGCGGC
CACCGCGCTCAGCGAC
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