mRNA_P-wetherbeei_contig5667.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A1F3A1D8_9PROT (DNA-binding response regulator n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A1D8_9PROT) HSP 1 Score: 394 bits (1011), Expect = 5.060e-134 Identity = 202/226 (89.38%), Postives = 212/226 (93.81%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKVG 678
MR LLVEDNTELVSLL+KGLS+GGIEAD+VGTA DA H LATM+YS VVLDLGLPD+DGI LLRDLRRRG+STPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPG+LLGRRLTFGNVALDTEGR+ FV HAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKML D GATVK+HTVRGVGYLLTE+K G
Sbjct: 1 MRALLVEDNTELVSLLRKGLSRGGIEADSVGTASDAGHALATMRYSVVVLDLGLPDDDGIGLLRDLRRRGDSTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGNLLGRRLTFGNVALDTEGRRTFVDGMPHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLTDAGATVKVHTVRGVGYLLTEEKAG 226
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A1H8UDT5_9PROT (DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8UDT5_9PROT) HSP 1 Score: 375 bits (962), Expect = 1.370e-126 Identity = 189/226 (83.63%), Postives = 210/226 (92.92%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKVG 678
MRVLLVED+TELV+LLKKGL+QGG ADAV TA DAAH LATM+Y+A+VLD GLPDEDG++LLRD+RRRG+STPVLVLTARDGV+DRV GLR GADDY+AKPFAMEELIAR+QALLRR +LLGRRLTFGNVALDTEGRQ+ + V AFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVY+HRLRKMLAD+GATVKIHTVRGVGYL++E+K G
Sbjct: 1 MRVLLVEDSTELVALLKKGLAQGGFSADAVCTAADAAHALATMRYAAMVLDRGLPDEDGLSLLRDMRRRGDSTPVLVLTARDGVTDRVAGLRDGADDYMAKPFAMEELIARLQALLRRSDNLLGRRLTFGNVALDTEGRQVIIGGTVRAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYIHRLRKMLADSGATVKIHTVRGVGYLMSEEKTG 226
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A1Q3KNS1_9PROT (DNA-binding response regulator n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KNS1_9PROT) HSP 1 Score: 367 bits (943), Expect = 1.040e-123 Identity = 186/226 (82.30%), Postives = 204/226 (90.27%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKVG 678
MRVLLVEDN ELV+LL KGL++ G AD+V TAGDAAH LA M+Y+AVVLDLGLPDEDG++LLR LR RG+STPVLVLTARDGVSDRV GLRAGADDYL KPFAMEEL+AR+QALLRRPG++LGRRLTFGNV+LDTEGRQ+ V V +FPARETAVLEILLRR GNVAPKRLFED LFGLSGDVGSNAVEVYVHRLRKMLAD GATV++HTVRGVGYLL EDK G
Sbjct: 1 MRVLLVEDNAELVALLVKGLARNGFSADSVDTAGDAAHALAAMRYAAVVLDLGLPDEDGLSLLRGLRSRGDSTPVLVLTARDGVSDRVNGLRAGADDYLVKPFAMEELVARLQALLRRPGNMLGRRLTFGNVSLDTEGRQVLVDGVVRSFPARETAVLEILLRRGGNVAPKRLFEDQLFGLSGDVGSNAVEVYVHRLRKMLADCGATVRVHTVRGVGYLLAEDKAG 226
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A1T4PPT4_9HYPH (DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4PPT4_9HYPH) HSP 1 Score: 361 bits (926), Expect = 3.780e-121 Identity = 181/224 (80.80%), Postives = 204/224 (91.07%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDK 672
MRVL+VEDN +LVSLL KGL+ GG AD+V T DA HVLATM+Y+A+VLDLGLPDEDG+ LLR++RRR ++TPVLVLTARDGV+DRVTGLR GADDYLAKPFAMEEL+AR+QALLRRPG+LLGR LTFGNV+LDTEGRQ+FV AFPARETAVLE+LLRR GNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLAD GA+VKIHTVRGVGYL++E+K
Sbjct: 1 MRVLIVEDNPDLVSLLIKGLAHGGFAADSVATVEDARHVLATMKYAAIVLDLGLPDEDGLVLLREMRRRSDATPVLVLTARDGVTDRVTGLREGADDYLAKPFAMEELVARLQALLRRPGNLLGRMLTFGNVSLDTEGRQVFVDGKPRAFPARETAVLELLLRRGGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADAGASVKIHTVRGVGYLMSEEK 224
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A521L3S6_9HYPH (Response regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L3S6_9HYPH) HSP 1 Score: 355 bits (910), Expect = 1.040e-118 Identity = 179/226 (79.20%), Postives = 199/226 (88.05%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKVG 678
MRVLLVEDN ELVSLL KGL++ G AD+VG+A DAAH +A M+YSA+VLDLGLPDEDG+TLLR +R R ++TPVLVLTARDG+SDRV GLRAGADDYL KPFAMEEL+AR+QALLRRPG+LLGR+L GNV+LDTEGRQ+ V + AFPARE AVLEIL+RRSGNVAPKRLFED LFGLSGDVGSNAVEVYVHRLRKML D GA VKIHTVRGVGYLL EDK G
Sbjct: 1 MRVLLVEDNAELVSLLVKGLARSGFAADSVGSAADAAHAMAAMRYSAIVLDLGLPDEDGLTLLRSIRGRADATPVLVLTARDGISDRVNGLRAGADDYLVKPFAMEELVARLQALLRRPGNLLGRQLNVGNVSLDTEGRQVLVDGTIRAFPAREAAVLEILMRRSGNVAPKRLFEDQLFGLSGDVGSNAVEVYVHRLRKMLGDCGARVKIHTVRGVGYLLAEDKGG 226
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A259MTK0_9PROT (DNA-binding response regulator n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MTK0_9PROT) HSP 1 Score: 353 bits (905), Expect = 6.150e-118 Identity = 176/225 (78.22%), Postives = 200/225 (88.89%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKV 675
MR+L+VEDN ELV+LL KGL++ G ADAVG AGDA H LA M+Y+A+VLDLGLPD+DG++LLR +R RG+STPVLVLTARDGVSDRV GLRAGADDYL KPFAMEEL+AR+QALLRRPG+LLGR+LTFGNV+L+TEGRQ+F+ V F ARETA+LEILLRR G+V PKRLFED LFGLSGDVGSNAVEVYVHRLRKMLAD GATVKIHTVRGVGYLL E+K
Sbjct: 1 MRILVVEDNAELVALLAKGLARSGFSADAVGNAGDAEHSLAAMRYAAIVLDLGLPDQDGLSLLRSIRGRGDSTPVLVLTARDGVSDRVNGLRAGADDYLVKPFAMEELVARLQALLRRPGNLLGRQLTFGNVSLETEGRQVFIDGTVRVFSARETAILEILLRRGGHVVPKRLFEDQLFGLSGDVGSNAVEVYVHRLRKMLADGGATVKIHTVRGVGYLLAEEKA 225
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A521MF01_9HYPH (Histidine kinase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MF01_9HYPH) HSP 1 Score: 343 bits (881), Expect = 4.420e-111 Identity = 185/220 (84.09%), Postives = 197/220 (89.55%), Query Frame = 3
Query: 687 FRSIISRVVALQVVAIGVTSILMPLALYWLLETAANSLHRETLRSQAVTIGSFLRPQADGRVTLDIPDDVRPLYAESHGLYAYAVLDASGRILFSSRADGAALFPTGTSAEGDRSASQRKPISGLFGLTVVRTVGERLYWIQIGQDLAHRDVIIDDIVAGFFSRVAWITFPILLVLLLISILIFRRVLEPVREASTTVAAIGPARTDVRLPEQSMSTEIV 1346
FRSIISRVVALQV+AIGVTS+LMPLALYWLLE AAN+LHRETLR+QAVT+GSFLRP+A G V LDIPDD RPLYA HGLYAYAVLDASGR LFSSRADGAALFP+G S+ GD A + S LFG+TVVRT+GERLYWIQ+GQDLAHRDVIIDDIV FFSRVAWITFPILLVLLLISILIFRRVLEPVREAS TVAAIGPA TDVRLPEQSM TEIV
Sbjct: 3 FRSIISRVVALQVIAIGVTSVLMPLALYWLLEQAANNLHRETLRNQAVTVGSFLRPEAGGGVVLDIPDDARPLYAGRHGLYAYAVLDASGRALFSSRADGAALFPSGGSSAGDWIARRASTGSDLFGVTVVRTIGERLYWIQVGQDLAHRDVIIDDIVTDFFSRVAWITFPILLVLLLISILIFRRVLEPVREASMTVAAIGPASTDVRLPEQSMPTEIV 222
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A512NP46_9HYPH (DNA-binding response regulator n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512NP46_9HYPH) HSP 1 Score: 332 bits (852), Expect = 6.260e-110 Identity = 168/226 (74.34%), Postives = 195/226 (86.28%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKVG 678
MR+LLVEDN +LVSL+ KGL + G AD+VG A DA H LA ++Y+AVVLDLGLPDEDG++ LR +R RG+STPVLVLTARDGVSDRVTGLRAGADDYL KPFAMEEL+AR++ALLRR +LLG+ LT GNVALDTEGRQ+ V V F +RETAVLEILLRR GNVAPKRLFEDHLFGL+ +VGSNAVEVY+HRLR+MLAD+GATV++HTVRGVGY+L E K G
Sbjct: 1 MRILLVEDNDDLVSLIVKGLERSGFNADSVGNAADADHALAAIRYAAVVLDLGLPDEDGLSWLRTVRGRGDSTPVLVLTARDGVSDRVTGLRAGADDYLVKPFAMEELVARLRALLRRSDNLLGQCLTLGNVALDTEGRQVTVDGTVRPFSSRETAVLEILLRRCGNVAPKRLFEDHLFGLTDEVGSNAVEVYIHRLRRMLADSGATVQVHTVRGVGYMLAEAKAG 226
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A537MYL3_9PROT (Response regulator transcription factor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MYL3_9PROT) HSP 1 Score: 328 bits (842), Expect = 1.170e-108 Identity = 172/225 (76.44%), Postives = 187/225 (83.11%), Query Frame = 1
Query: 1 MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLDLGLPDEDGITLLRDLRRRGESTPVLVLTARDGVSDRVTGLRAGADDYLAKPFAMEELIARIQALLRRPGSLLGRRLTFGNVALDTEGRQIFVADAVHAFPARETAVLEILLRRSGNVAPKRLFEDHLFGLSGDVGSNAVEVYVHRLRKMLADTGATVKIHTVRGVGYLLTEDKV 675
MRVLLVEDN ELVSLLKKGL+Q G AD++GT GDA HVLATM+Y+AVVLDLGLPDEDG+ LLRD+RRR ++TPVLVLTARDGVSDRVTGLR GADDYL LRRPG+LLGR LTFGNV+LDTEGRQ+FV AFPARETAVLEILLRR GNVAPKRLFED LFGLSGDVGSNAVEVYVHRLRKML D GA V+IHTVRGVGYL+ E+K
Sbjct: 1 MRVLLVEDNPELVSLLKKGLAQSGFSADSMGTVGDALHVLATMKYAAVVLDLGLPDEDGLVLLRDMRRRHDTTPVLVLTARDGVSDRVTGLREGADDYL----------------LRRPGNLLGRLLTFGNVSLDTEGRQVFVDGIARAFPARETAVLEILLRRGGNVAPKRLFEDQLFGLSGDVGSNAVEVYVHRLRKMLGDAGAGVRIHTVRGVGYLMAEEKA 209
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Match: A0A1F3A3F0_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3A3F0_9PROT) HSP 1 Score: 314 bits (804), Expect = 1.700e-99 Identity = 168/223 (75.34%), Postives = 187/223 (83.86%), Query Frame = 3
Query: 678 VTYFRSIISRVVALQVVAIGVTSILMPLALYWLLETAANSLHRETLRSQAVTIGSFLRPQADGRVTLDIPDDVRPLYAESHGLYAYAVLDASGRILFSSRADGAALFPTGTSAEGDRSASQRKPISGLFGLTVVRTVGERLYWIQIGQDLAHRDVIIDDIVAGFFSRVAWITFPILLVLLLISILIFRRVLEPVREASTTVAAIGPARTDVRLPEQSMSTEIV 1346
+T FRSIISRVVAL VVAIGVTS+L+PLALYWLL AA++LHRE LR QAVT+ SFLR +ADG V +DIPDD RPLYA+ HGLYAYAV+DASGR+LFSSR DGAALF G SA D +R S L G+TV RT+G+RLYWIQ+ QDLAH DVI+DDIVA F SRVAWI FPILLVLL+I ILIFRRVLEPVREASTT AAIGPARTDVRLPEQ+M TEIV
Sbjct: 1 MTRFRSIISRVVALHVVAIGVTSVLIPLALYWLLNQAASNLHREMLRGQAVTVSSFLRSRADGSVVIDIPDDERPLYADDHGLYAYAVIDASGRVLFSSRTDGAALFQHGESAPRDWIVRRRSTGSDLIGVTVTRTIGKRLYWIQVAQDLAHDDVIVDDIVAAFISRVAWIVFPILLVLLMIDILIFRRVLEPVREASTTAAAIGPARTDVRLPEQAMPTEIV 223 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5667.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5667.1.1 >prot_P-wetherbeei_contig5667.1.1 ID=prot_P-wetherbeei_contig5667.1.1|Name=mRNA_P-wetherbeei_contig5667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp MRVLLVEDNTELVSLLKKGLSQGGIEADAVGTAGDAAHVLATMQYSAVVLback to top mRNA from alignment at P-wetherbeei_contig5667:1..1346- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5667.1.1 ID=mRNA_P-wetherbeei_contig5667.1.1|Name=mRNA_P-wetherbeei_contig5667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1346bp|location=Sequence derived from alignment at P-wetherbeei_contig5667:1..1346- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5667:1..1346- >mRNA_P-wetherbeei_contig5667.1.1 ID=mRNA_P-wetherbeei_contig5667.1.1|Name=mRNA_P-wetherbeei_contig5667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig5667:1..1346- (Phaeothamnion wetherbeei SAG_119_79)back to top |