mRNA_P-wetherbeei_contig5664.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI) HSP 1 Score: 290 bits (742), Expect = 1.900e-81 Identity = 222/546 (40.66%), Postives = 270/546 (49.45%), Query Frame = 1
Query: 16 RWAGTQELLALLNGIPLESTRAPEQAAELLRDLVEAQAKMGGLVEEALQPDVRGDVCATLLTAAATG---HPSFAKLCVDAGLPSNLVHCLRIIRVIEFESAMEEQRLAAIXXXXXXXXXXXXXXXXXXXAAGNRSRSPTGGRDGDAPASPGDGGSGRGGATAAGAMVERHAPPRHPNATASAEAALAGVRKLTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAAVVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQATGSVPIAMPPSGLSDATGTPSPRAMR--LLATNPPAFGIIRTLLLQRMPVLLAICKNSRGGXXXXXXXXXXXXXXXXVVHSVGGGGDADAPELEMMEMATLVAQKAVVMRLARWDRPH 1638
RWAGT+ELL+LL+G E E R + E QAKM LVE+AL P+ GD+C LL AA TG HP+F KLCVDAGLPSNLVHCLRI+RV+EFESAM R TGG G A G G+G GG A R +P R T AT R+ +LL T+C+ A VGEQ+KPHL GLLSLAVSAYPP G +VQ A VV ALM C++SS+VWLLH + M DVVGELRHL G D P P G RSPG GGG ++ ELVG AAE +G+WL+A+ A V + SS FV A V DFE AGGY+ + MV +S HLP MLEQV LVSA + G + + TP R R L+A+N AFGII++LL + P + A+C GG V + GG L+ + +VA++AV MRL RW R H
Sbjct: 207 RWAGTEELLSLLDGGSPGGGGEVEDKVERYRSIAEVQAKMSDLVEQALVPESHGDLCGQLLDAA-TGVGHHPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAM---------------------------------RDGTGGGGGTTAA--GSFGAGDGGDDEASGDEARPSPSLPEGDD----------RPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNKAMLDVVGELRHLSGLDGTAPKSPTP---GRKVVRGGYTPRSVSPMSKGKRSPGPAK---------------GGGRTDTNEPPSTELVGAAAEESGLWLSALRAAVSTVRSSSHFVPAFVQDFESAGGYETVGYMVRKSSIDHLPAMLEQVCLLVSATSAGGM----------ERLETPGGRVERSDLMASNSAAFGIIQSLLAECTPPVEAVCLQGIGGRVSSGTCE---------VSCLSGGHGLADQGLDTEDAVVMVAERAVAMRLDRWGREH 669
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.180e-78 Identity = 221/546 (40.48%), Postives = 271/546 (49.63%), Query Frame = 1
Query: 16 RWAGTQELLALLNGIPLESTRAPEQAAELLRDLVEAQAKMGGLVEEALQPDVRGDVCATLLTAAATG---HPSFAKLCVDAGLPSNLVHCLRIIRVIEFESAMEEQRLAAIXXXXXXXXXXXXXXXXXXXAAGNRSRSPTGGRDGDAPASPGDGGSGRGGATAAGAMVERHAPPRHPNATASAEAALAGVRKLTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAAVVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQATGSVPIAMPPSGLSDATGTPSPRAMR--LLATNPPAFGIIRTLLLQRMPVLLAICKNSRGGXXXXXXXXXXXXXXXXVVHSVGGGGDADAPELEMMEMATLVAQKAVVMRLARWDRPH 1638
RWAGT+ELL+LL+G E E R + E QAKM LVE+AL P+ GD+C LL AA TG HP+F KLCVDAGLPSNLVHCLRI+RV+EFESAM + XXXXXXX A P+G +P+ P D R T AT R+ +LL T+C+ A VGEQ+KPHL GLLSLAVSAYPP G +VQ A VV ALM C++SS+VWLLH + MQDVVGELRHL G D P P G RSPG GGG ++ ELVG AAE +G+WL+A+ A V + SS FV A V DFE AGGY+ + MV +S LP MLEQV LVSA + G + + TP R R L+A+N AFGII++LL + P + A+C GG V + GG L+ + +VA++AV MRL RW R H
Sbjct: 260 RWAGTEELLSLLDGGSPGGGGEVEDKVERYRSIAEVQAKMSDLVEQALVPESHGDLCGQLLDAA-TGVGHHPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMRD----------GTGGXXXXXXXGSFGAGDGGDDEPSGDEARPSPSLPED-----------------------------------DDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARTVVEALMGGCLNSSMVWLLHYNKAMQDVVGELRHLGGLDGTAPKLPTP---GRKVVRGGYTPRSVSPMSKGKRSPGPAK---------------GGGRTDNNEPPSTELVGAAAEESGLWLSALRAAVSTVRSSSHFVPAFVQDFESAGGYETVGYMVRKSSIDRLPAMLEQVCLLVSATSAGGM----------ERLETPGGRVERSDLMASNSAAFGIIQSLLAECTPPVEAVCLQGIGGRVSSGTCE---------VSCLSGGYGLADQGLDTEDAVVMVAERAVAMRLDRWGREH 722
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A7S1YSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSP2_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.860e-24 Identity = 91/302 (30.13%), Postives = 140/302 (46.36%), Query Frame = 1
Query: 595 ATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAA-VVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQATGSVPIAMPPSGLSDA---TGTPSPRAMRL--------LATNPPAFGIIRTLLLQRMPVLLAICKNSRG 1464
ATA+V +LL +C+ D SVGEQ++PHL GLL+L+ ++YPP G+++ AA V+ + + C+S+S+VW LH R+++ + +++ LCG SP + +R L G AAE AG+W+ A+ V ++T S + ++ DF+ AGGY VL + S HLPRMLE VA LV + P + SD T PS + + +ATNP AF I+ L+++ +P L A + G
Sbjct: 4 ATAKVTRLLCLLCS--DPSVGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKMIVHMTDDIKELCGMT-------------------------------AVSSPSSATRC---------------------------LYGEAAEHAGLWVVALRTVVNLVTHSCNYQCLELLKDFDAAGGYHVLCYGILNSSPEHLPRMLELVATLVCCRT--DAPSSNSSLAASDGIHGTSLPSDQITQNNKDIDTEHIATNPDAFEIVEDLMVRSVPFLAAYVEAHSG 243
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A7S4S7R3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7R3_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.540e-22 Identity = 91/302 (30.13%), Postives = 140/302 (46.36%), Query Frame = 1
Query: 595 ATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAA-VVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQATGSVPIAMPPSGLSDA---TGTPSPRAMRL--------LATNPPAFGIIRTLLLQRMPVLLAICKNSRG 1464
ATA+V +LL +C+ D SVGEQ++PHL GLL+L+ ++YPP G+++ AA V+ + + C+S+S+VW LH R+++ + +++ LCG SP + +R L G AAE AG+W+ A+ V ++T S + ++ DF+ AGGY VL + S HLPRMLE VA LV + P + SD T PS + + +ATNP AF I+ L+++ +P L A + G
Sbjct: 92 ATAKVARLLCLLCS--DPSVGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKMIVHMTDDIKELCGMT-------------------------------AVSSPSSATRC---------------------------LYGEAAEHAGLWVVALRTVVNLVTHSCNYQCLELLKDFDAAGGYHVLCYGILNSSPEHLPRMLELVATLVCCRT--DAPSSNSSLAASDGIHGTSLPSDQITQNNKDIDTEHIATNPDAFEIVEDLMVRSVPFLAAYVEAHSG 331
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A1E7FHH9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH9_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.640e-19 Identity = 84/300 (28.00%), Postives = 138/300 (46.00%), Query Frame = 1
Query: 574 VRKLTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVA-AVVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQATGSVPIAMPP-SGLSDATGTPSPRAMRL-LATNPPAFGIIRTLLLQRMPVLLAICKNSRG 1464
++ +++ AT +V QLL T+C D SVGEQ++PHL GLL+L+ ++YP G++V +AA +V+ A C+S+S+VW LH R+++ + +++ LCG T +AS L G AEAAG+W ++ V ++ S R ++ DFE A GY VL + +S H +++E + L + Q+T + +D G + + L LA+NP AF II L+ Q +P+L + + G
Sbjct: 136 IKPISSRATGKVSQLLCTLCT--DQSVGEQLRPHLFGLLALSGASYPRSGVHVAKAASQVIIAFAQYCLSNSLVWFLHDRKMITHMTDDIKELCGQTTT-----------------------------------TNXXXXXXNAS--------------------SLYGTDAEAAGLWAISLSTVVHLVYYSCRHDCHELMNDFEAAKGYQVLKTAILQSKSMHGKKLMELLPLLATCQSTTXXXXXXXDITAATDKGGKENTKIEDLKLASNPAAFDIIEDLMYQVVPMLRMYVEENNG 378
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A7S1CTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTZ4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.810e-18 Identity = 83/298 (27.85%), Postives = 143/298 (47.99%), Query Frame = 1
Query: 583 LTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAA-VVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALVSAQ--ATGSVPIAMPPSG--------LSDATGTPSPRAMRLLATNPPAFGIIRTLLLQRMPVLLA 1443
L+ A A+V +LL +C+ D SVGEQ++PHL GLL+L+ ++YP G+++ AA +V+ A C+S+S+VW LH R+++ + +++ LC +T S + S +S+SG + L G AE G+W+ A+ V +++ S + ++ D++ AGGY VLA + S H+P++LE V ALV + AT S + P S L++ + A +A N AF I+ L+++ + +++A
Sbjct: 11 LSTQAAAKVSKLLCLLCS--DPSVGEQLRPHLFGLLALSGASYPNSGVHIAAAASDVILAFSRSCLSASLVWFLHDRKMIVHMTDDIKELCA---------------------------------MTGSGPSSPSSSNNSSSGNNRC----------------LYGKDAEEKGLWVIAIRTVVHLVSNSCHYQCVELLKDYDSAGGYHVLAYAISNSSMKHVPKLLELVTALVCCKIGATSSAMSSTPSSQEHLQDEGMLANYNDDSTDLAEAKMAMNTNAFEIMDDLMIRSLKLIVA 257
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: A0A7S3Q415_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q415_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.600e-18 Identity = 88/314 (28.03%), Postives = 143/314 (45.54%), Query Frame = 1
Query: 574 VRKLTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCGDDVAVPPGGDPSGAGXXXXXXXXXXXXAGAQHGVTRSPGTGSRSPRHSASGMDALGGGGGLGESGGADGPELVGLAAEAAGVWLTAMEATVCVITRSSRFVAA-VVGDFEVAGGYDVLADMVGRSGEAHLPRMLEQVAALV---------------SAQATGSVPIAMPPSGLSDATGTPSPRAMRLLATNPPAFGIIRTLLLQRMPVLLAICKNSRGG 1467
VR ++ AT +V +LL+ +C GDASVGEQ++PHL GLL+L+ + YP G++V RAA +V+ + C+S+S+VW LH R ++ + +++ LCG A S T S + G AE G+W+ A+ A V ++ +S + ++ DFE AGGY VL + SG +HL ++L+ A++ ++ AT + G SD+ P L+ TNP AF +I L+ Q +P+L+ +++ G
Sbjct: 282 VRSVSKAATEKVQKLLSLLC--GDASVGEQLRPHLFGLLALSGARYPINGVHVARAASKVIVSFSKGCLSTSLVWFLHDRNMIVHMTDDVKELCGMTAAA------------------------------ASSNTASLT---------------------------FCGKEAECHGLWIYALTAIVYMVKQSCLCKCSELLKDFEAAGGYHVLRYAMANSGRSHLKKLLKLTVAIMYCKVESPDDNXXXXXTSLATADYTDTL---GQSDSLNAPVINEEHLV-TNPSAFDVIEDLMDQSIPLLVMHRQDNESG 532
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Match: B5Y3B7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3B7_PHATC) HSP 1 Score: 91.7 bits (226), Expect = 1.420e-15 Identity = 63/214 (29.44%), Postives = 101/214 (47.20%), Query Frame = 1
Query: 217 HPSFAKLCVDAGLPSNLVHCLRIIRVIEFESAMEEQRLAAIXXXXXXXXXXXXXXXXXXXAAGNRSRSPTGGRDGDAPASPGDGGSGRGGATAAGAMVERHAPPRHPNATASAEAALAGVRKLTANATARVVQLLATVCAQGDASVGEQVKPHLSGLLSLAVSAYPPGGLYVQRAALEVVTALMDCCVSSSVVWLLHSRQVMQDVVGELRHLCG 858
H F CV+ LP NLVHCLR++RV+E + A E A + N G A A ++H +P ++ + A ++ + AT +V +LL +C D SVGEQ++PHL GL +L+ ++YPP GL+V AA +V+ A + C++ +VW +H R+++ + ++R LCG
Sbjct: 148 HEKFVLRCVENELPPNLVHCLRLLRVLELQHASGEVENAK------------ESQVTKHDSVENEE----------------------GTADEAMEKEDQHQEEENPVGEIESDTSSAVLQPIGLVATQKVSKLLCQLCR--DPSVGEQLRPHLFGLFALSGASYPPSGLHVALAASDVIVAFSEHCLNRQLVWFIHDRKMILHMTDDVRELCG 325 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5664.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5664.1.1 >prot_P-wetherbeei_contig5664.1.1 ID=prot_P-wetherbeei_contig5664.1.1|Name=mRNA_P-wetherbeei_contig5664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=593bp AAAVQRWAGTQELLALLNGIPLESTRAPEQAAELLRDLVEAQAKMGGLVEback to top mRNA from alignment at P-wetherbeei_contig5664:3..1782+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5664.1.1 ID=mRNA_P-wetherbeei_contig5664.1.1|Name=mRNA_P-wetherbeei_contig5664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1780bp|location=Sequence derived from alignment at P-wetherbeei_contig5664:3..1782+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5664:3..1782+ >mRNA_P-wetherbeei_contig5664.1.1 ID=mRNA_P-wetherbeei_contig5664.1.1|Name=mRNA_P-wetherbeei_contig5664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1779bp|location=Sequence derived from alignment at P-wetherbeei_contig5664:3..1782+ (Phaeothamnion wetherbeei SAG_119_79)back to top |