mRNA_P-wetherbeei_contig5662.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5662.2.1
Unique NamemRNA_P-wetherbeei_contig5662.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A835Z9L2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.070e-23
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  193 DLEAGTSPECAICYNAVDPSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPP 363
            DLE GT PECAICYN VDPSL  +M+TPCDH FH  CL +W+ IKMECPTCR+TLPP
Sbjct:  238 DLETGTGPECAICYNVVDPSLRTHMVTPCDHCFHTECLQQWINIKMECPTCRSTLPP 294
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.280e-21
Identity = 47/71 (66.20%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:  160 TGTGGG--AEAQRDLEAGTSPECAICYNAVDPSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            T T GG  +E  RDLEAG   EC ICY AVD  L DYM+TPCDHVFH+ CL RWM IK  CPTCR  LPPA
Sbjct:  700 TETAGGQPSEESRDLEAGNCLECTICYAAVDAELGDYMLTPCDHVFHQGCLTRWMDIKTTCPTCRQELPPA 770
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A7S2HH52_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HH52_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.400e-17
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  184 AQRDLEAGTSPECAICYNAVDPSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLP 360
            +Q  +E G+S EC ICY+ +D +  DYMITPCDH+FH  CL RWM+ KMECP CR  LP
Sbjct:  257 SQDTVENGSSLECVICYSTIDQATRDYMITPCDHIFHPTCLERWMEQKMECPVCRHVLP 315
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: L8GD19_ACACA (Zinc finger family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GD19_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  193 DLEAGTSPECAICYNAVDPSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLP 360
            D E G S EC IC + V P+  DYM+TPC+H+FH+ CL +WM+ KMECPTCR  LP
Sbjct:  400 DAEQGESKECVICMSVVLPNQRDYMVTPCNHLFHQNCLEQWMEFKMECPTCRRPLP 455
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A1D1YLS5_9ARAE (Transmembrane E3 ubiquitin-protein ligase 1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YLS5_9ARAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.360e-15
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  211 SPECAICYNAVD--PSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            S +C IC  A+D  P   DYM+TPCDH FH  CL RWM IKMECPTCR  LPPA
Sbjct:  530 STDCVICMTAIDVTPPSNDYMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 583
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A453BFP2_AEGTS (RING-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BFP2_AEGTS)

HSP 1 Score: 76.3 bits (186), Expect = 3.210e-15
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  217 ECAICYNAVDPS--LEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            +C IC   +D S    +YM+ PC+H+FH  CL RWM IKMECPTCR +LPPA
Sbjct:   25 DCVICMTTIDLSQRTSEYMVAPCEHIFHSGCLQRWMDIKMECPTCRRSLPPA 76
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: D3AZF4_POLPP (RING-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AZF4_POLPP)

HSP 1 Score: 82.0 bits (201), Expect = 5.780e-15
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  220 CAICYNAVDPSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            C IC N V+ +  DYMITPC+H+FH  CL+RWM  KMECPTCR T+PPA
Sbjct:  489 CVICMNDVEANDSDYMITPCEHLFHSRCLLRWMDYKMECPTCRRTIPPA 537
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A199W324_ANACO (Transmembrane E3 ubiquitin-protein ligase 1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199W324_ANACO)

HSP 1 Score: 81.6 bits (200), Expect = 7.980e-15
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  217 ECAICYNAVDPSLE--DYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            +C IC  A+D S    DYM+TPCDH+FH  CL RWM IKMECPTCR +LPPA
Sbjct:  506 DCVICMTAIDLSQRSNDYMVTPCDHLFHSGCLQRWMDIKMECPTCRRSLPPA 557
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BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: UPI0018AE1498 (transmembrane E3 ubiquitin-protein ligase FLY1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE1498)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-14
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  190 RDLEAGTSP--ECAICYNAVD--PSLEDYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            R LE  T+   +C IC  A+D      DYM+TPCDH FH  CL RWM IKMECPTCR +LPPA
Sbjct:  495 RRLETDTTQAADCVICMTAIDVMQRSNDYMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 557
[Close]
BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Match: A0A6I9QGT5_ELAGV (transmembrane E3 ubiquitin-protein ligase FLY1 isoform X1 n=12 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QGT5_ELAGV)

HSP 1 Score: 80.9 bits (198), Expect = 1.500e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  193 DLEAGTSPECAICYNAVDPSLE--DYMITPCDHVFHEACLVRWMQIKMECPTCRATLPPA 366
            + +A  + +C IC  A+D +    DYM+TPCDH FH  CL RWM IKMECPTCR +LPPA
Sbjct:  505 ESDATRTTDCVICMTAIDLTQRSNDYMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 564
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5662.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9L2_9STRA1.070e-2373.68RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5JDM9_9PHAE1.280e-2166.20RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2HH52_9STRA2.400e-1759.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
L8GD19_ACACA2.030e-1558.93Zinc finger family protein n=1 Tax=Acanthamoeba ca... [more]
A0A1D1YLS5_9ARAE2.360e-1564.81Transmembrane E3 ubiquitin-protein ligase 1 n=1 Ta... [more]
A0A453BFP2_AEGTS3.210e-1557.69RING-type domain-containing protein n=1 Tax=Aegilo... [more]
D3AZF4_POLPP5.780e-1565.31RING-type domain-containing protein n=1 Tax=Polysp... [more]
A0A199W324_ANACO7.980e-1565.38Transmembrane E3 ubiquitin-protein ligase 1 n=1 Ta... [more]
UPI0018AE14981.480e-1458.73transmembrane E3 ubiquitin-protein ligase FLY1-lik... [more]
A0A6I9QGT5_ELAGV1.500e-1456.67transmembrane E3 ubiquitin-protein ligase FLY1 iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5662contigP-wetherbeei_contig5662:2740..3576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3827.XP_004487269.1
PFAMszf-RING_2
Model size539
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009845,GO:0009987,GO:0010154,GO:0010191,GO:0010393,GO:0010498,GO:0012505,GO:0016043,GO:0016567,GO:0016740,GO:0017144,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0036211,GO:0042545,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044464,GO:0045229,GO:0045488,GO:0048316,GO:0048363,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0080001,GO:0090351,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue1.63e-16
EggNOG OGsCOG5540@1|root,KOG0828@2759|Eukaryota,37I5S@33090|Viridiplantae,3GBCE@35493|Streptophyta,4JD2B@91835|fabids
DescriptionTransmembrane E3 ubiquitin-protein ligase 1-like
Cds size222
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.2528312-UTR-P-wetherbeei_contig5662:2739..29091683186841.2528312-UTR-P-wetherbeei_contig5662:2739..2909Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5662 2740..2909 -
1683186841.284793-UTR-P-wetherbeei_contig5662:3429..35761683186841.284793-UTR-P-wetherbeei_contig5662:3429..3576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5662 3430..3576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.2686853-CDS-P-wetherbeei_contig5662:2909..30591683186841.2686853-CDS-P-wetherbeei_contig5662:2909..3059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5662 2910..3059 -
1683186841.2770028-CDS-P-wetherbeei_contig5662:3357..34291683186841.2770028-CDS-P-wetherbeei_contig5662:3357..3429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5662 3358..3429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5662.2.1prot_P-wetherbeei_contig5662.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5662 2910..3429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5662.2.1

>prot_P-wetherbeei_contig5662.2.1 ID=prot_P-wetherbeei_contig5662.2.1|Name=mRNA_P-wetherbeei_contig5662.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MAAVTGTGGGAEAQRDLEAGTSPECAICYNAVDPSLEDYMITPCDHVFHE
ACLVRWMQIKMECPTCRATLPPA*
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mRNA from alignment at P-wetherbeei_contig5662:2740..3576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5662.2.1 ID=mRNA_P-wetherbeei_contig5662.2.1|Name=mRNA_P-wetherbeei_contig5662.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig5662:2740..3576- (Phaeothamnion wetherbeei SAG_119_79)
GCTGGGGTACGAAGCCCGCCGCAAGCGCGCAGGGATCGCGTCGGCGGCGG
CGGCGGCGGCAGCCGCGGCGGCGGCGCGGGGCGGAGCGCGGAGCGGCCTA
CTATAGCGGCAGCTACTGTTGCTGCTGCTGCTGCGGCGGCGGCGGCGATG
GCGGCCGTCACGGGAACAGGCGGCGGAGCTGAGGCCCAGCGAGATCTGGA
GGCGGGAACGAGCCCCGAGGTGAGAAGGGAAAGAGATGCAGAGCGGGCAG
ATCGAGGAGAGCGCCATCGTCTGGAGGAGGGCGGGTTTCTTTTAATCGGT
TCTCCGATCCCCCACCCACCTTTCGGAGAGTCGCGGTGGGTGGATGGTGA
CGTTTTCGTTTCTTGTCTCGTTTCCTCCTCCGTTGTTGGTCTCTCGTGAC
CGCTGTTGGTCTTTCGTGACCGTTGTTGGTCTTTCGTGACATGACTGAAA
CGCGCAGCTTACTCCTTCCGCCATCGACCTGTGTTGCTTTCTTTGCGGTG
ACTGCGGCGGGCGGCAGTGTGCCATCTGCTACAACGCGGTGGACCCGTCA
CTGGAGGACTACATGATCACGCCGTGCGACCACGTCTTCCACGAGGCCTG
CCTGGTGCGCTGGATGCAGATCAAGATGGAGTGCCCGACGTGCCGGGCCA
CCCTGCCGCCCGCATGACTTGTTTCTTGCCAGTCTGATGAGGAGCTTGAA
TTGGCAAGGGAACAAAACTCAGTAAATGTGCATACCCGACGCGTCGCATT
CGTGACCTTTTTGTGGTGTCTCTTCTTTCTTCATCCCTTCGCACAAGCTT
TCCCTCTCGCCTGCATGGTCGCGCTATGAAAGTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5662:2740..3576-

>mRNA_P-wetherbeei_contig5662.2.1 ID=mRNA_P-wetherbeei_contig5662.2.1|Name=mRNA_P-wetherbeei_contig5662.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig5662:2740..3576- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCGTCACGGGAACAGGCGGCGGAGCTGAGGCCCAGCGAGATCT
GGAGGCGGGAACGAGCCCCGAGTGTGCCATCTGCTACAACGCGGTGGACC
CGTCACTGGAGGACTACATGATCACGCCGTGCGACCACGTCTTCCACGAG
GCCTGCCTGGTGCGCTGGATGCAGATCAAGATGGAGTGCCCGACGTGCCG
GGCCACCCTGCCGCCCGCATGA
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