mRNA_P-wetherbeei_contig56582.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56582.1.1
Unique NamemRNA_P-wetherbeei_contig56582.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56582.1.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.680e-10
Identity = 48/142 (33.80%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:   13 YILCCAVDMRPFSMLQGVGAQLFVGGLTPPVYGTA---------------NLTQDGPEDPRSGMDGAAGDVAGGAGGAYEFVGSGPFCSFQVDMTSILNTSYCTASVSFVNKRH-EHRRTSLATRTFPGTHTAADVSPWITA 390
            Y++ C +++RP  M    G +LFVG L+P    T                 + Q   +D RS  +   G   GGA           F   Q+D+T++    Y T +VS+V K   +  R SLATR FPG+HTA D+ PWI A
Sbjct:   21 YMIWCCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGA-----------FLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEA 151
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BLAST of mRNA_P-wetherbeei_contig56582.1.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.260e-10
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 1 
Query:   13 YILCCAVDMRPFSMLQGVGAQLFVGGLTPPVYGTA---------------NLTQDGPEDPRSGMDGAAGDVAGGAGGAYEFVGSGPFCSFQVDMTSILNTSYCTASVSFVNKRH-EHRRTSLATRTFPGTHTAADVSPWITA 390
            Y++ C ++ RP  M    G +LFVG L+P    T                 + Q   +D RS  +   G   GGA           F   Q+D+T++    Y T +VS+V K   +  R SLATR FPG+HTA D+ PWI A
Sbjct:   21 YVIWCCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGA-----------FLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEA 151
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BLAST of mRNA_P-wetherbeei_contig56582.1.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.210e-9
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:   13 YILCCAVDMRPFSMLQGVGAQLFVGGLTPPVYGTA------NLTQDGPED--PRSGMDGAAGDVAGGAGGAYEFVG---SGPFCSFQVDMTSILNTSYCTASVSFVNK--RHEHRRTSLATRTFPGTHTAADVSPWITA 390
            Y++ C +++RP  M    G +LFVG L+P    T       N   D   D   ++ MD     +        EF+G    G F    +D+T++ N  Y T +VS+V K    +  R +LATR FPG+HTA D+ PWI A
Sbjct:   17 YVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLR--LL-----REEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEA 148
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BLAST of mRNA_P-wetherbeei_contig56582.1.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.800e-8
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 1 
Query:    4 NRNYILCCAVDMRPFSMLQGVGAQLFVGGLTPPVYGTANLTQDGPEDPRSGM-----DGAAGDVAGGAGGAYEFVGSGPFCSFQVDMTSILNTSYCTASVSFVNKRHEH-RRTSLATRTFPGTHTAADVSPWI 384
            NR +++ CA++MRP +M    G +L +G L P  Y  + ++        S +     D     +        +    GPF   Q+D+T++ N  Y T SVS++ +      R  LATR FPG+HTAAD+ PWI
Sbjct:  189 NRRFVVWCAINMRPQNMRYDDGYKLHMGMLCPK-YVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWI 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56582.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZU3_9PHAE1.680e-1033.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE4.260e-1033.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE9.210e-934.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.800e-833.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56582contigP-wetherbeei_contig56582:62..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.9363658-CDS-P-wetherbeei_contig56582:61..4511683186840.9363658-CDS-P-wetherbeei_contig56582:61..451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56582 62..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56582.1.1prot_P-wetherbeei_contig56582.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56582 62..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56582.1.1

>prot_P-wetherbeei_contig56582.1.1 ID=prot_P-wetherbeei_contig56582.1.1|Name=mRNA_P-wetherbeei_contig56582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MNRNYILCCAVDMRPFSMLQGVGAQLFVGGLTPPVYGTANLTQDGPEDPR
SGMDGAAGDVAGGAGGAYEFVGSGPFCSFQVDMTSILNTSYCTASVSFVN
KRHEHRRTSLATRTFPGTHTAADVSPWITA
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mRNA from alignment at P-wetherbeei_contig56582:62..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56582.1.1 ID=mRNA_P-wetherbeei_contig56582.1.1|Name=mRNA_P-wetherbeei_contig56582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig56582:62..451- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCAACTACATTTTGTGCTGCGCGGTGGACATGCGGCCTTTCAG
CATGCTGCAGGGCGTCGGTGCGCAGCTCTTCGTGGGCGGGCTCACCCCAC
CAGTATATGGCACAGCAAATCTCACACAAGACGGTCCTGAAGATCCTCGA
TCAGGAATGGACGGAGCTGCGGGCGACGTTGCAGGCGGAGCTGGTGGAGC
GTACGAGTTCGTGGGCAGTGGACCGTTCTGCAGCTTCCAGGTGGACATGA
CCTCCATACTCAATACGAGCTACTGCACTGCGTCTGTCAGCTTCGTCAAC
AAGCGCCATGAGCACCGCCGGACCAGTCTTGCCACGAGGACATTCCCGGG
AACGCACACAGCGGCCGACGTCTCGCCGTGGATAACCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56582:62..451-

>mRNA_P-wetherbeei_contig56582.1.1 ID=mRNA_P-wetherbeei_contig56582.1.1|Name=mRNA_P-wetherbeei_contig56582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig56582:62..451- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCAACTACATTTTGTGCTGCGCGGTGGACATGCGGCCTTTCAG
CATGCTGCAGGGCGTCGGTGCGCAGCTCTTCGTGGGCGGGCTCACCCCAC
CAGTATATGGCACAGCAAATCTCACACAAGACGGTCCTGAAGATCCTCGA
TCAGGAATGGACGGAGCTGCGGGCGACGTTGCAGGCGGAGCTGGTGGAGC
GTACGAGTTCGTGGGCAGTGGACCGTTCTGCAGCTTCCAGGTGGACATGA
CCTCCATACTCAATACGAGCTACTGCACTGCGTCTGTCAGCTTCGTCAAC
AAGCGCCATGAGCACCGCCGGACCAGTCTTGCCACGAGGACATTCCCGGG
AACGCACACAGCGGCCGACGTCTCGCCGTGGATAACCGCG
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