mRNA_P-wetherbeei_contig56580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56580.1.1
Unique NamemRNA_P-wetherbeei_contig56580.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A520ZM51_9RHOB (Glutamate synthase (Fragment) n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A520ZM51_9RHOB)

HSP 1 Score: 138 bits (347), Expect = 1.650e-39
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            MN+ A+AK DDL DR+P YALVGEVDLVVVRFD EVSV YGRCLHRGAL++DG+V G NLICG+H WDYRLD+GVSEY+N E
Sbjct:    1 MNKTAVAKLDDLPDRKPKYALVGEVDLVVVRFDDEVSVFYGRCLHRGALMADGFVSGKNLICGVHYWDYRLDSGVSEYANDE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: UPI001865E03E (glutamate synthase-related protein n=1 Tax=Fluviibacterium sp. MJW13 TaxID=2720031 RepID=UPI001865E03E)

HSP 1 Score: 145 bits (365), Expect = 2.940e-39
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            M +I IA++DDL DR+P YALVGEVDLVVVRFD EVSV YGRCLHRGAL+SDG+VRG NLICG+HDWDYRLDTGVSEY+N E
Sbjct:    1 MKKIQIARFDDLPDRDPQYALVGEVDLVVVRFDDEVSVFYGRCLHRGALMSDGFVRGRNLICGVHDWDYRLDTGVSEYANEE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A523MSV0_9BACT (Glutamate synthase (Fragment) n=1 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A523MSV0_9BACT)

HSP 1 Score: 133 bits (335), Expect = 1.320e-38
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            M ++A+AKWD LKDR+PAYALV  VDLV+VR+D +VSV YGRC HRGALLSDG+V G+NLICG+H WD+R DTG+SEY++ E
Sbjct:    1 MQKVAVAKWDALKDRQPAYALVANVDLVIVRYDDQVSVFYGRCPHRGALLSDGFVSGNNLICGVHKWDFRYDTGISEYNDEE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A7S9QD46_9RHOB (Rieske 2Fe-2S domain-containing protein n=1 Tax=Pontivivens ytuae TaxID=2789856 RepID=A0A7S9QD46_9RHOB)

HSP 1 Score: 142 bits (357), Expect = 3.990e-38
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            M + A+A W +L+DR+PAYALVGEVDLVVVR+D EVSV YGRCLHRGAL++DG+VRG NLICG+HDWDYRLDTGVSEY+N E
Sbjct:    1 MRKEAVAAWSELEDRKPAYALVGEVDLVVVRWDDEVSVFYGRCLHRGALMADGFVRGRNLICGVHDWDYRLDTGVSEYANEE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A7Y2XG03_9GAMM (Rieske 2Fe-2S domain-containing protein (Fragment) n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2XG03_9GAMM)

HSP 1 Score: 139 bits (350), Expect = 5.980e-38
Identity = 61/82 (74.39%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            M ++A+A+W++L+DR+PA+ALVG+VDLVV RFD  VSVLYGRC HRGAL+SDGYV G NLICG+HDWDYRLDTGVSEY+N E
Sbjct:    1 MKKLAVAQWNELEDRKPAHALVGDVDLVVTRFDDRVSVLYGRCAHRGALMSDGYVDGPNLICGVHDWDYRLDTGVSEYNNAE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: UPI00147B909F (glutamate synthase-related protein n=4 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI00147B909F)

HSP 1 Score: 140 bits (353), Expect = 1.510e-37
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            MN++++AK DDL DR+P YALVGEVDLVVVRFD EVSV YGRCLHRGAL++DG+VRG+NLICG+H WDYR+D+GVSEY+N E
Sbjct:    1 MNKVSVAKLDDLPDRKPKYALVGEVDLVVVRFDEEVSVFYGRCLHRGALMADGFVRGNNLICGVHYWDYRVDSGVSEYANDE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A7Y1Z360_9HYPH (Rieske 2Fe-2S domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y1Z360_9HYPH)

HSP 1 Score: 140 bits (352), Expect = 2.140e-37
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            M  + +A  ++L+DR+PAY+LVGEVDLVVVRFDAEVSV YGRCLHRGAL++DG+VRG NLICG+HDWDYRLD+GVSEYSN+E
Sbjct:    1 MKPVKVANLNELEDRKPAYSLVGEVDLVVVRFDAEVSVFYGRCLHRGALMADGFVRGDNLICGVHDWDYRLDSGVSEYSNNE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A7Y3E3E3_9BACT (Rieske (2Fe-2S) protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3E3E3_9BACT)

HSP 1 Score: 130 bits (328), Expect = 2.550e-37
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   16 IAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            +A+W DL+DREPAYALV +VDLVV+RFD  VSVLYGRCLHRGALLSDG+V G NLICG+H WDYR+D+G+S Y+N E
Sbjct:   21 VARWSDLRDREPAYALVEDVDLVVIRFDKRVSVLYGRCLHRGALLSDGHVEGDNLICGVHLWDYRVDSGISAYANDE 97          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A6L8CSB5_9GAMM (Rieske 2Fe-2S domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8CSB5_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 2.950e-37
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            MNR+AIA WDD++DR+PA+ALV  VDLV++R+D  VSVLYGRC HRGAL+SDGYV G NLICG+H WDYR DTGVSEY+N E
Sbjct:    1 MNRLAIAHWDDIEDRQPAHALVSNVDLVIIRYDGNVSVLYGRCAHRGALMSDGYVLGQNLICGVHSWDYRFDTGVSEYNNSE 82          
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Match: A0A7Y2CDD1_9PROT (Rieske 2Fe-2S domain-containing protein n=1 Tax=Marinicaulis sp. TaxID=2174442 RepID=A0A7Y2CDD1_9PROT)

HSP 1 Score: 139 bits (351), Expect = 3.100e-37
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    4 NRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALLSDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE 246
            N  AIAKW +L+DR+PAYALVGEVDLVV+R D +VSV+YGRCLHRGALL+DG+V G NLICGLHDWDYRL+TGVSEY+N E
Sbjct:    4 NWTAIAKWSELEDRKPAYALVGEVDLVVIRHDKDVSVMYGRCLHRGALLADGHVDGDNLICGLHDWDYRLETGVSEYNNAE 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520ZM51_9RHOB1.650e-3976.83Glutamate synthase (Fragment) n=2 Tax=Rhodobactera... [more]
UPI001865E03E2.940e-3980.49glutamate synthase-related protein n=1 Tax=Fluviib... [more]
A0A523MSV0_9BACT1.320e-3869.51Glutamate synthase (Fragment) n=1 Tax=Nitrospina s... [more]
A0A7S9QD46_9RHOB3.990e-3876.83Rieske 2Fe-2S domain-containing protein n=1 Tax=Po... [more]
A0A7Y2XG03_9GAMM5.980e-3874.39Rieske 2Fe-2S domain-containing protein (Fragment)... [more]
UPI00147B909F1.510e-3775.61glutamate synthase-related protein n=4 Tax=Ruegeri... [more]
A0A7Y1Z360_9HYPH2.140e-3775.61Rieske 2Fe-2S domain-containing protein n=1 Tax=Hy... [more]
A0A7Y3E3E3_9BACT2.550e-3774.03Rieske (2Fe-2S) protein (Fragment) n=1 Tax=Gemmati... [more]
A0A6L8CSB5_9GAMM2.950e-3773.17Rieske 2Fe-2S domain-containing protein n=1 Tax=Ga... [more]
A0A7Y2CDD1_9PROT3.100e-3777.78Rieske 2Fe-2S domain-containing protein n=1 Tax=Ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56580contigP-wetherbeei_contig56580:272..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1449350.OCH239_12885
PFAMsGlu_synthase,Rieske,zf-CDGSH
Model size246
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-36
EggNOG OGsCOG0069@1|root,COG4638@1|root,COG0069@2|Bacteria,COG4638@2|Bacteria,1MU7B@1224|Proteobacteria,2TRWC@28211|Alphaproteobacteria
DescriptionBelongs to the glutamate synthase family
Cds size246
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.908673-CDS-P-wetherbeei_contig56580:271..5171683186840.908673-CDS-P-wetherbeei_contig56580:271..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56580 272..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56580.1.1prot_P-wetherbeei_contig56580.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56580 272..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56580.1.1

>prot_P-wetherbeei_contig56580.1.1 ID=prot_P-wetherbeei_contig56580.1.1|Name=mRNA_P-wetherbeei_contig56580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MNRIAIAKWDDLKDREPAYALVGEVDLVVVRFDAEVSVLYGRCLHRGALL
SDGYVRGSNLICGLHDWDYRLDTGVSEYSNHE
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mRNA from alignment at P-wetherbeei_contig56580:272..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56580.1.1 ID=mRNA_P-wetherbeei_contig56580.1.1|Name=mRNA_P-wetherbeei_contig56580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig56580:272..517+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCATCGCCATTGCCAAATGGGACGACCTGAAGGACCGCGAGCC TGCCTATGCGCTGGTCGGTGAGGTCGATCTGGTCGTTGTCCGGTTCGATG CGGAGGTCAGTGTGCTGTATGGCCGATGCCTGCATCGGGGTGCTTTGCTT TCCGATGGGTACGTACGAGGCTCCAACTTGATCTGTGGTCTGCATGACTG GGATTACAGGCTGGACACCGGCGTTTCCGAATACAGCAATCACGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56580:272..517+

>mRNA_P-wetherbeei_contig56580.1.1 ID=mRNA_P-wetherbeei_contig56580.1.1|Name=mRNA_P-wetherbeei_contig56580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig56580:272..517+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCATCGCCATTGCCAAATGGGACGACCTGAAGGACCGCGAGCC
TGCCTATGCGCTGGTCGGTGAGGTCGATCTGGTCGTTGTCCGGTTCGATG
CGGAGGTCAGTGTGCTGTATGGCCGATGCCTGCATCGGGGTGCTTTGCTT
TCCGATGGGTACGTACGAGGCTCCAACTTGATCTGTGGTCTGCATGACTG
GGATTACAGGCTGGACACCGGCGTTTCCGAATACAGCAATCACGAA
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