mRNA_P-wetherbeei_contig56574.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56574.1.1
Unique NamemRNA_P-wetherbeei_contig56574.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A847ZRN9_9HYPH (Glutamine synthetase (Fragment) n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZRN9_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 8.850e-41
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    4 LTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            +T E LKK VK+G IDTV+AAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYK+ASWEK
Sbjct:    6 MTFEALKKLVKSGEIDTVIAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKSASWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A537P3T8_9PROT (Glutamine synthetase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P3T8_9PROT)

HSP 1 Score: 137 bits (345), Expect = 3.970e-40
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTL +LKKEV AG+IDTVVAAFPDMQGRL+GKRF A +FVDGAYEETHGCNYLLA D+DMEPVPGYKAASW+K
Sbjct:    1 MLTLAQLKKEVAAGSIDTVVAAFPDMQGRLIGKRFHAQYFVDGAYEETHGCNYLLADDIDMEPVPGYKAASWQK 74          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A6G6X408_9HYPH (Glutamine synthetase n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6X408_9HYPH)

HSP 1 Score: 138 bits (348), Expect = 2.020e-37
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTL +LKKEV AGTIDTVVAAFPDMQGRL+GKRF A FFVDGAYEETHGCNYLLA D+DMEPVPGYK ASW+K
Sbjct:    1 MLTLAQLKKEVAAGTIDTVVAAFPDMQGRLIGKRFHAQFFVDGAYEETHGCNYLLADDIDMEPVPGYKVASWQK 74          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A3N5H5A3_9HYPH (Glutamine synthetase (Fragment) n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5H5A3_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 8.170e-37
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTLE+LKKEV AGTIDTVVAA  DMQGRLMGKRF A +FVDGAYEETHGCNYLLAVDV MEPVPGYKA+SWEK
Sbjct:    5 MLTLEQLKKEVAAGTIDTVVAALVDMQGRLMGKRFHAQYFVDGAYEETHGCNYLLAVDVAMEPVPGYKASSWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A2W2AYZ5_9HYPH (Glutamine synthetase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2AYZ5_9HYPH)

HSP 1 Score: 130 bits (327), Expect = 2.350e-34
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTLE+LK EVKAGTIDTVVAA  D+QGRL+GKRF A +F DG YEETHGCNYLL VD++MEPVPGYKA SWEK
Sbjct:    5 MLTLEQLKAEVKAGTIDTVVAAMVDLQGRLIGKRFHAKYFADGGYEETHGCNYLLGVDIEMEPVPGYKATSWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: UPI0019AD7800 (Glutamine synthetase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019AD7800)

HSP 1 Score: 129 bits (325), Expect = 4.620e-34
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTL +LKKEV AGTIDTVVAA  DMQGRL+GKRF A FFVDG YEETHGCNYLL VD+ MEPVPGYKA SWEK
Sbjct:    5 MLTLGDLKKEVVAGTIDTVVAAMVDMQGRLIGKRFHAQFFVDGGYEETHGCNYLLGVDIAMEPVPGYKATSWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: UPI0018C63685 (glutamine synthetase family protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C63685)

HSP 1 Score: 129 bits (324), Expect = 6.450e-34
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            MLTLE+LK EVKAGTIDTVV A  DMQGRL+GKRF A +F DG YEETHGCNYLL VD++MEPVPGYKA SWEK
Sbjct:    5 MLTLEQLKAEVKAGTIDTVVCALVDMQGRLIGKRFHAAYFADGGYEETHGCNYLLGVDIEMEPVPGYKATSWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A0Q7DSQ1_9HYPH (Glutamine synthetase n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0Q7DSQ1_9HYPH)

HSP 1 Score: 123 bits (309), Expect = 9.030e-32
Identity = 54/72 (75.00%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    7 TLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            TL++LK +VKAGTIDTV+ AFPDMQGRL+GKRF+A FF+DGA +ETHGC+YLLA D+DMEPVPGY+AA+W K
Sbjct:    7 TLDQLKADVKAGTIDTVLVAFPDMQGRLIGKRFQAEFFLDGAIDETHGCDYLLANDIDMEPVPGYEAANWAK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A535IMU8_9CHLR (Glutamine synthetase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IMU8_9CHLR)

HSP 1 Score: 122 bits (307), Expect = 2.740e-31
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            ML+L +LK+E+ AGTIDTVVAA  DMQGRL+GKRF A FF D  +EETHGCNYLL VD++MEPVPGYKA SWEK
Sbjct:    5 MLSLGDLKREIAAGTIDTVVAAMVDMQGRLIGKRFHAQFFADSGHEETHGCNYLLGVDIEMEPVPGYKATSWEK 78          
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Match: A0A7V6Y9F3_9PROT (Glutamine synthetase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V6Y9F3_9PROT)

HSP 1 Score: 120 bits (300), Expect = 1.750e-30
Identity = 52/72 (72.22%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    7 TLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHGCNYLLAVDVDMEPVPGYKAASWEK 222
            +L+ LK +VK GTIDTV+ AFPDMQGRL+GKRF+A +F++GA EETHGC+YLLA D+DMEPVPGY+AA+WEK
Sbjct:    6 SLDALKADVKNGTIDTVIVAFPDMQGRLIGKRFQAEYFLEGALEETHGCDYLLANDIDMEPVPGYEAANWEK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56574.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZRN9_9HYPH8.850e-4189.04Glutamine synthetase (Fragment) n=1 Tax=Phyllobact... [more]
A0A537P3T8_9PROT3.970e-4085.14Glutamine synthetase (Fragment) n=1 Tax=Alphaprote... [more]
A0A6G6X408_9HYPH2.020e-3786.49Glutamine synthetase n=4 Tax=Hyphomicrobiales TaxI... [more]
A0A3N5H5A3_9HYPH8.170e-3787.84Glutamine synthetase (Fragment) n=2 Tax=Hyphomicro... [more]
A0A2W2AYZ5_9HYPH2.350e-3479.73Glutamine synthetase n=1 Tax=Aestuariivirga litora... [more]
UPI0019AD78004.620e-3482.43Glutamine synthetase n=1 Tax=Hyphomicrobiales bact... [more]
UPI0018C636856.450e-3479.73glutamine synthetase family protein n=1 Tax=Aestua... [more]
A0A0Q7DSQ1_9HYPH9.030e-3275.00Glutamine synthetase n=6 Tax=Hyphomicrobiales TaxI... [more]
A0A535IMU8_9CHLR2.740e-3174.32Glutamine synthetase n=1 Tax=Chloroflexi bacterium... [more]
A0A7V6Y9F3_9PROT1.750e-3072.22Glutamine synthetase n=1 Tax=Alphaproteobacteria b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56574contigP-wetherbeei_contig56574:1..222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122132.AQYH01000008_gene2593
Preferred nameglnA2
PFAMsGln-synt_C
Model size222
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.02e-30
EggNOG OGsCOG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TU6U@28211|Alphaproteobacteria,4B7QK@82115|Rhizobiaceae
EC6.3.1.2
Descriptionglutamine synthetase
Cds size222
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.7017543-CDS-P-wetherbeei_contig56574:0..2221683186840.7017543-CDS-P-wetherbeei_contig56574:0..222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56574 1..222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56574.1.1prot_P-wetherbeei_contig56574.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56574 1..222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56574.1.1

>prot_P-wetherbeei_contig56574.1.1 ID=prot_P-wetherbeei_contig56574.1.1|Name=mRNA_P-wetherbeei_contig56574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MLTLEELKKEVKAGTIDTVVAAFPDMQGRLMGKRFEANFFVDGAYEETHG
CNYLLAVDVDMEPVPGYKAASWEK
back to top

mRNA from alignment at P-wetherbeei_contig56574:1..222-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56574.1.1 ID=mRNA_P-wetherbeei_contig56574.1.1|Name=mRNA_P-wetherbeei_contig56574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig56574:1..222- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGCTCGAAGAACTGAAAAAGGAAGTCAAAGCCGGCACGATCGA TACGGTCGTGGCCGCTTTCCCCGACATGCAGGGCCGCCTCATGGGCAAGC GCTTCGAGGCCAACTTCTTCGTCGATGGCGCCTACGAGGAAACCCACGGC TGCAACTATCTGCTGGCAGTTGACGTCGATATGGAACCCGTGCCGGGCTA CAAGGCAGCGAGCTGGGAAAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56574:1..222-

>mRNA_P-wetherbeei_contig56574.1.1 ID=mRNA_P-wetherbeei_contig56574.1.1|Name=mRNA_P-wetherbeei_contig56574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig56574:1..222- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGCTCGAAGAACTGAAAAAGGAAGTCAAAGCCGGCACGATCGA
TACGGTCGTGGCCGCTTTCCCCGACATGCAGGGCCGCCTCATGGGCAAGC
GCTTCGAGGCCAACTTCTTCGTCGATGGCGCCTACGAGGAAACCCACGGC
TGCAACTATCTGCTGGCAGTTGACGTCGATATGGAACCCGTGCCGGGCTA
CAAGGCAGCGAGCTGGGAAAAG
back to top