mRNA_P-wetherbeei_contig56518.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56518.1.1
Unique NamemRNA_P-wetherbeei_contig56518.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: UPI0016641D9C (DUF6044 family protein n=2 Tax=Hymenobacter glacieicola TaxID=1562124 RepID=UPI0016641D9C)

HSP 1 Score: 65.5 bits (158), Expect = 2.150e-9
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   52 IPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHAT-INQTFVPHRVEFNIVALSNSSGIGGFFSEAFKILSKGITH 462
            +P +  +G+ + GQP ++ + +N  + +  + D L+L+GFA +SSL+ T +F++A A +   +  +R  ++ +R       L L  LL EY LV++  I + FV HRVEF+   L+   G+G   S A +    G  H
Sbjct:  147 LPTYTAYGVSVLGQPWVVLALLNLRRGRGHWSDWLMLVGFALWSSLVLTGLFVLAVAALVLIWDAVRYGQVAWRPVLGVGLLALSYLLVEYPLVYSLLIERQFVSHRVEFDYARLA-PGGVGAGLSGAARYFGLGQYH 283          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: A0A521GGD6_9BACT (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A521GGD6_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.350e-8
Identity = 45/134 (33.58%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   25 SIGSFL-FSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKI--PYRLAFASLALFLLALLAEYRLVHATINQTFVPHRVEFNIVALSNSSGIGG 417
            ++GS L F+ IP +  +G+ + GQPLLL +F+N    ++ +   +++  F FYS L+ + ++I+AG  +      LR+++I  PY L    LA+  L  L ++ ++ A +   FV HR E+   AL + S IGG
Sbjct:  144 ALGSALVFALIPTYSNYGLSVMGQPLLLLTFLNLLNGRAGWDSWVMICLFPFYSFLVRSGLYILAGLALLGLVDALRNRRIVWPYWLGLTLLAV--LYALVDFPMIWAYLTNAFVSHRTEYEPAALVSGSLIGG 275          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: UPI00112415F1 (DUF6044 family protein n=1 Tax=Hymenobacter sp. DG01 TaxID=2584940 RepID=UPI00112415F1)

HSP 1 Score: 63.2 bits (152), Expect = 1.360e-8
Identity = 42/138 (30.43%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   52 IPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHATINQT-FVPHRVEFNIVALSNSSGIGGFFSEAFKILSKGITH 462
            +P +  +G+ + GQP +  + +N  +    + D L+L+ FAF+SSL+   +F++A A +  A      +++ +R     L L L   + EY LV++ + Q  FVPHR+EF+   L+   G+G   + A + L  G  H
Sbjct:  147 LPTYTAYGVSVLGQPWVALALLNLRRGPGHWSDWLLLVAFAFWSSLVLAGVFVLAAAGLLLALDAGHRRRVAWRPVLGLLVLGLSYAVVEYPLVYSLLVQRQFVPHRLEFDYARLA-PGGVGAGLAGAGRYLLLGQYH 283          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: UPI001FD294E4 (DUF6044 family protein n=2 Tax=unclassified Hymenobacter TaxID=2615202 RepID=UPI001FD294E4)

HSP 1 Score: 62.8 bits (151), Expect = 1.840e-8
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   52 IPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHAT-INQTFVPHRVEFNIVALSNSSGIGGFFSEAFKILSKGITH 462
            +P +  +G  + GQP ++ + +N       + D LVL+GFA +SSL+ T +F++A A +   +   R +++ +R       L L  LL EY LV++  I + FV HRVEF+   L+   G+G     A +    G  H
Sbjct:  133 LPTYTAYGASVLGQPWVVLALLNLRLGPGRWSDWLVLVGFALWSSLVLTGVFVLAAAGMVLVWDASRHRRVAWRPVLGVGLLALGYLLVEYPLVYSLLIERQFVSHRVEFDYAQLA-PGGVGAGLIGAVRYFGLGQYH 269          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: A0A7W9T282_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter luteus TaxID=1411122 RepID=A0A7W9T282_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-8
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 1
Query:   52 IPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHAT-INQTFVPHRVEFNIVALSNSSGIGGFFSEAFKILSKGITH 462
            +P +  +G+ + GQP +  + +N  +    + D LVL+ FAF+SSL+   +F++A A +     T R ++I +R     L L +   + EY LV++  + + FVPHR+EF+   L+   G+G   + A + L  G  H
Sbjct:  147 LPAYTAYGVSVLGQPWVALALLNLRRGPGRWSDWLVLVVFAFWSSLVLAGMFVLAAAGLLLLRDTWRHRRIAWRPVLGLLVLGISYGVVEYPLVYSLLVKRQFVPHRLEFDYARLA-PGGVGVGLASAGRYLLLGQYH 283          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: A0A343JFY3_9CLOT (Uncharacterized protein n=1 Tax=Clostridium isatidis TaxID=182773 RepID=A0A343JFY3_9CLOT)

HSP 1 Score: 61.2 bits (147), Expect = 6.310e-8
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   43 FSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHAT-INQTFVPHRVEFNI 384
            F+ +PF+P  G+ IAGQPL L  F+N  + K  ++D ++++  A YSSL+    F + G  +   +  +R KK+  +   + + + +  L  EYRLV +  +  ++V HR E+N+
Sbjct:  140 FALLPFWPSGGLSIAGQPLALYIFLNIRENKDKFIDWILIVIIAMYSSLVLAFSFFLLGIGLIWLYDLIRLKKLNIKFLLSIIFMGVCFLAIEYRLVGSMFLGDSYVSHRTEWNL 254          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: UPI000E70670E (DUF6044 family protein n=1 Tax=Clostridium isatidis TaxID=182773 RepID=UPI000E70670E)

HSP 1 Score: 61.2 bits (147), Expect = 6.680e-8
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   43 FSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHAT-INQTFVPHRVEFNI 384
            F+ +PF+P  G+ IAGQPL L  F+N  + K  ++D ++++  A YSSL+    F + G  +   +  +R KK+  +   + + + +  L  EYRLV +  +  ++V HR E+N+
Sbjct:  378 FALLPFWPSGGLSIAGQPLALYIFLNIRENKDKFIDWILIVIIAMYSSLVLAFSFFLLGIGLIWLYDLIRLKKLNIKFLLSIIFMGVCFLAIEYRLVGSMFLGDSYVSHRTEWNL 492          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: A0A2N2D518_9FIRM (Uncharacterized protein n=1 Tax=Firmicutes bacterium HGW-Firmicutes-15 TaxID=2013776 RepID=A0A2N2D518_9FIRM)

HSP 1 Score: 59.3 bits (142), Expect = 2.900e-7
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   43 FSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALFLLALLAEYRLVHATI-NQTFVPHRVEFNIVALSN-----SSGIGGFF 423
            F+ +PF+PF G+ +AGQPL+L +F+N   K    +D ++L    FYSSL+F+  F +    +   +  +   K+  R   A   + L+ LL EYRL++ T  +  F+  R EF +  +       +S I  FF
Sbjct:  136 FALLPFWPFGGLSVAGQPLVLYAFMNIRSKMDNKMDWIILALVPFYSSLVFSFAFFLFMMGLWWIYDVIFMGKVNTRFLVAIFFMGLVFLLVEYRLIYNTFFDSGFISIRSEFPLSRIPGKRAALNSSIANFF 268          
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Match: UPI00164DECFD (DUF6044 family protein n=1 Tax=Pontibacter sp. KCTC 32443 TaxID=2764721 RepID=UPI00164DECFD)

HSP 1 Score: 57.8 bits (138), Expect = 1.000e-6
Identity = 37/116 (31.90%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   43 FSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVDILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLT--LRDKKIPYRLAFASLALFLLALLAEYRLVHATI-NQTFVPHRVEFN 381
            F  +PF+  + + +AGQPLLL +++N  K+K +  D L+++ F F+SSL     FI+    +G  FL    + KKIP+        L +  L+ E+ L++    N+ F  HR  ++
Sbjct:  161 FGLLPFYSIYNLSVAGQPLLLYTYLNLLKRKYSLPDFLIILLFPFFSSLPLVGFFILVA--LGMWFLIELYKQKKIPFPFLGGIGLLAVCYLITEHNLIYTMFFNKDFASHREAYD 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56518.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0016641D9C2.150e-931.88DUF6044 family protein n=2 Tax=Hymenobacter glacie... [more]
A0A521GGD6_9BACT1.350e-833.58Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
UPI00112415F11.360e-830.43DUF6044 family protein n=1 Tax=Hymenobacter sp. DG... [more]
UPI001FD294E41.840e-831.88DUF6044 family protein n=2 Tax=unclassified Hymeno... [more]
A0A7W9T282_9BACT1.850e-831.16Uncharacterized protein n=1 Tax=Hymenobacter luteu... [more]
A0A343JFY3_9CLOT6.310e-832.17Uncharacterized protein n=1 Tax=Clostridium isatid... [more]
UPI000E70670E6.680e-832.17DUF6044 family protein n=1 Tax=Clostridium isatidi... [more]
A0A2N2D518_9FIRM2.900e-732.33Uncharacterized protein n=1 Tax=Firmicutes bacteri... [more]
UPI00164DECFD1.000e-631.90DUF6044 family protein n=1 Tax=Pontibacter sp. KCT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56518contigP-wetherbeei_contig56518:17..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog504472.Slin_4867
Model size492
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.01e-13
EggNOG OGs28H8D@1|root,2Z7KA@2|Bacteria,4NJN3@976|Bacteroidetes,47JRJ@768503|Cytophagia
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.0857446-CDS-P-wetherbeei_contig56518:16..5081683186840.0857446-CDS-P-wetherbeei_contig56518:16..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56518 17..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56518.1.1prot_P-wetherbeei_contig56518.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56518 17..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56518.1.1

>prot_P-wetherbeei_contig56518.1.1 ID=prot_P-wetherbeei_contig56518.1.1|Name=mRNA_P-wetherbeei_contig56518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
SSFTLTQISIGSFLFSCIPFFPFFGIGIAGQPLLLNSFINFYKKKSTYVD
ILVLIGFAFYSSLIFTNIFIVAGAFIGCAFLTLRDKKIPYRLAFASLALF
LLALLAEYRLVHATINQTFVPHRVEFNIVALSNSSGIGGFFSEAFKILSK
GITHVQITYFVFII
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mRNA from alignment at P-wetherbeei_contig56518:17..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56518.1.1 ID=mRNA_P-wetherbeei_contig56518.1.1|Name=mRNA_P-wetherbeei_contig56518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig56518:17..508+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCTTTACGTTAACACAAATTTCCATTGGATCATTTCTGTTTAGCTG CATTCCATTTTTTCCATTCTTTGGAATTGGGATTGCAGGACAACCTCTGT TATTGAACTCATTTATTAATTTTTATAAGAAGAAGTCAACCTACGTTGAT ATACTAGTGTTGATTGGTTTTGCTTTTTACTCTTCGCTGATTTTTACAAA CATTTTTATTGTTGCCGGTGCGTTTATCGGCTGCGCGTTTTTAACACTGA GGGATAAAAAGATTCCTTACCGACTGGCTTTCGCAAGCCTTGCTTTATTT CTCCTAGCGCTGCTTGCAGAATACCGATTGGTACACGCTACAATTAATCA AACATTTGTACCGCATCGGGTAGAATTTAATATAGTCGCGCTAAGTAATT CGTCAGGAATCGGAGGGTTTTTCTCGGAAGCTTTTAAAATACTTTCGAAA GGCATTACCCATGTTCAGATAACGTATTTTGTATTTATCATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56518:17..508+

>mRNA_P-wetherbeei_contig56518.1.1 ID=mRNA_P-wetherbeei_contig56518.1.1|Name=mRNA_P-wetherbeei_contig56518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig56518:17..508+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCTTTACGTTAACACAAATTTCCATTGGATCATTTCTGTTTAGCTG
CATTCCATTTTTTCCATTCTTTGGAATTGGGATTGCAGGACAACCTCTGT
TATTGAACTCATTTATTAATTTTTATAAGAAGAAGTCAACCTACGTTGAT
ATACTAGTGTTGATTGGTTTTGCTTTTTACTCTTCGCTGATTTTTACAAA
CATTTTTATTGTTGCCGGTGCGTTTATCGGCTGCGCGTTTTTAACACTGA
GGGATAAAAAGATTCCTTACCGACTGGCTTTCGCAAGCCTTGCTTTATTT
CTCCTAGCGCTGCTTGCAGAATACCGATTGGTACACGCTACAATTAATCA
AACATTTGTACCGCATCGGGTAGAATTTAATATAGTCGCGCTAAGTAATT
CGTCAGGAATCGGAGGGTTTTTCTCGGAAGCTTTTAAAATACTTTCGAAA
GGCATTACCCATGTTCAGATAACGTATTTTGTATTTATCATA
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